Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009548

Physical Location & Seq

Genomic Coordinates Reverse (-)

28693326 .. 28700216

Gene Structure 6891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00307410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCGAAGCCAGTGGCTGATTGGCAGAGCAACAAGGAAGCAGTTCAGGCCACAAACGACGACGCTTCCGCCAGCAAACTGTCCTGCGTGAAAAAGGGTTACATGAAAGACGATTATGTCCATTTGTTTGTGAGAAGACCTGTCAGAAGATCACCCATTATTAACCGCGGTTACTTTGCCCGCTGGGCTGCGCTTCGCAAGCTTATGAATCAGTTTCTTGATACTGAAGTCGGCGAAAAGGGTCAGTTGAAGAAGCAGATACTATCACTTGGAGCTGGCTTTGATACCACATATTTCCAGTTGCAGGATGAAGGGAGAGCACCATATTTATATGTGGAGTTGGATTTTAAGGAGGTTACTAGAAAGAAGGCAACAATTATTGAAACCTACAGTCAAATGAGGGACAAAATTAGTGCAACAGCATCAATCTCTCGAGAGAGAGGAGAAGTGCTGAGTGACTGCTATAAGCTACTTCCAGTTGATTTGCGCGACATACATCAATTAAACGAGGTCATAGCTTTGGCTGGTATGGATCCCAGCCTGCCAACTTTTATAATTGCAGAATGCGTTTTGATATACATTGATCCAGAATCCAGTCGTGCCATAGTTGGCTGGGCATCAAAAACATTTTCAACAGCAATTTTTTTCTTATATGAGCAGATTCATCCAGATGATGCTTTTGGGCAGCAGATGATCAGAAACTTGGAGAGTCGAGGTTGTTCACTCTTGGGAATACATGATACGCCAACATTGCAGGCAAAGGAAAGACTTTTTCTTGACCGAGGATGGCAGAGAGCTGTTGCCTGGGACATGCTGAAAGTATATAGTAGTTTTGTTGAAGCTCAAGAAAGACGCAGGATTGAACGATTGGAATTGTTTGATGAATTTGAAGAATGGCACATGATGCAGGCAAGTCAACTCCTCCTTTCTGTCCTTAATCTTTTAAAGTTTCTCTTGACTGTTCCAAAAAATCTTTTTGAGGATTTCGGCTTCCTTAAAGAGCAGCAGAAGCACGAGCCCATCCCCTCCTCATCAGCGTCACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0016740 GO:0016741 GO:0023051 GO:0023057 GO:0032259 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:1900457 GO:1900458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LCM

Protein Analysis

348

Amino Acids

40.04

Weight (kDa)

6.35

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LCM	PF04072	44 - 204	6.4e-19	Leucine carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02100 AT1G02100 AT1G02100
fragaria_vesca	FvH4_7g10160 FvH4_7g10160 FvH4_7g10160 FvH4_7g10160
malus_domestica	MD02G1211800.v1.1 MD07G1108400.v1.1
prunus_persica	Prupe.2G131200_v2.0.a1
pyrus_communis	pycom02g17670 pycom07g09300
rosa_chinensis	RchiOBHm_Chr1g0347871
rosa_laevigata	RLG00000028707
rosa_multiflora	Rmu_ssc0000342.1_g000006
rosa_roxburghii	Rroxscaffold_4G00307410
rosa_rugosa	Rorug01G0190300
rosa_samantha	Rh1AG208400 Rh1BG172900 Rh1CG192700 Rh1DG202800
rosa_wichuraiana	Rw1G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	554
AasI	GACNNNNNNGTC	1 cut(s)	116
AccII	CGCG	2 cut(s)	168, 489
AciI	CCGC	4 cut(s)	69, 166, 168, 181
AclWI	GGATC	3 cut(s)	527, 540, 578
AcsI	RAATTY	1 cut(s)	884
AcuI	CTGAAG	1 cut(s)	246
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	6 cut(s)	250, 383, 633, 839, 863, 890
AjnI	CCWGG	1 cut(s)	803
AluBI	AGCT	6 cut(s)	202, 275, 469, 518, 797, 842
AluI	AGCT	6 cut(s)	202, 275, 469, 518, 797, 842
Alw21I	GWGCWC	1 cut(s)	322
AlwI	GGATC	3 cut(s)	527, 540, 578
AlwNI	CAGNNNCTG	1 cut(s)	17
Ama87I	CYCGRG	1 cut(s)	432
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	3 cut(s)	188, 685, 1003
ApoI	RAATTY	1 cut(s)	884
Asp700I	GAANNNNTTC	1 cut(s)	42
AspLEI	GCGC	2 cut(s)	193, 489
AsuHPI	GGTGA	2 cut(s)	144, 1032
AvaI	CYCGRG	1 cut(s)	432
BaeI	ACNNNNGTAYC	2 cut(s)	213, 246
BamHI	GGATCC	1 cut(s)	532
BanII	GRGCYC	1 cut(s)	1020
BauI	CACGAG	1 cut(s)	1013
BbsI	GAAGAC	1 cut(s)	142
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	3 cut(s)	175, 697, 1015
BccI	CCATC	2 cut(s)	780, 1028
BciT130I	CCWGG	1 cut(s)	805
BclI	TGATCA	1 cut(s)	693
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	1 cut(s)	388
BglI	GCCNNNNNGGC	1 cut(s)	185
BisI	GCNGC	3 cut(s)	189, 686, 1004
BlsI	GCNGC	3 cut(s)	190, 687, 1005
Bme1390I	CCNGG	1 cut(s)	805
BmeT110I	CYCGRG	1 cut(s)	432
BmiI	GGNNCC	1 cut(s)	534
BmrFI	CCNGG	1 cut(s)	805
BmsI	GCATC	4 cut(s)	431, 626, 664, 894
BpiI	GAAGAC	1 cut(s)	142
BpuEI	CTTGAG	1 cut(s)	828
BsaJI	CCNNGG	3 cut(s)	166, 781, 804
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse1I	ACTGG	4 cut(s)	11, 298, 476, 594
Bse3DI	GCAATG	1 cut(s)	749
BseBI	CCWGG	1 cut(s)	805
BseDI	CCNNGG	3 cut(s)	166, 781, 804
BseGI	GGATG	4 cut(s)	313, 664, 791, 1020
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMI	GCAATG	1 cut(s)	749
BseMII	CTCAG	1 cut(s)	443
BseNI	ACTGG	4 cut(s)	11, 298, 476, 594
BseRI	GAGGAG	3 cut(s)	456, 911, 1018
BseXI	GCAGC	3 cut(s)	175, 697, 1015
BseYI	CCCAGC	3 cut(s)	183, 536, 612
Bsh1236I	CGCG	2 cut(s)	168, 489
BshFI	GGCC	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	322
BsiHKCI	CYCGRG	1 cut(s)	432
BslFI	GGGAC	2 cut(s)	416, 821
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmFI	GGGAC	2 cut(s)	416, 821
BsmI	GAATGC	1 cut(s)	569
BsnI	GGCC	1 cut(s)	50
BsoBI	CYCGRG	1 cut(s)	432
Bsp1286I	GDGCHC	2 cut(s)	322, 1020
Bsp143I	GATC	4 cut(s)	149, 532, 583, 693
BspACI	CCGC	4 cut(s)	69, 166, 168, 181
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	444
BspFNI	CGCG	2 cut(s)	168, 489
BspLI	GGNNCC	1 cut(s)	534
BspPI	GGATC	3 cut(s)	527, 540, 578
BsrDI	GCAATG	1 cut(s)	749
BsrI	ACTGG	4 cut(s)	11, 298, 476, 594
BssECI	CCNNGG	3 cut(s)	166, 781, 804
BssMI	GATC	4 cut(s)	149, 532, 583, 693
BssSI	CACGAG	1 cut(s)	1013
Bst2BI	CACGAG	1 cut(s)	1013
Bst2UI	CCWGG	1 cut(s)	805
Bst4CI	ACNGT	3 cut(s)	81, 392, 961
BstAPI	GCANNNNNTGC	1 cut(s)	904
BstC8I	GCNNGC	7 cut(s)	73, 181, 200, 277, 542, 756, 909
BstDEI	CTNAG	1 cut(s)	452
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	4 cut(s)	313, 664, 791, 1020
BstFNI	CGCG	2 cut(s)	168, 489
BstHHI	GCGC	2 cut(s)	193, 489
BstKTI	GATC	4 cut(s)	152, 535, 586, 696
BstMBI	GATC	4 cut(s)	149, 532, 583, 693
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 185, 199, 751, 904, 1009
BstNI	CCWGG	1 cut(s)	805
BstNSI	RCATGY	1 cut(s)	814
BstSCI	CCNGG	1 cut(s)	803
BstSFI	CTRYAG	1 cut(s)	388
BstUI	CGCG	2 cut(s)	168, 489
BstV1I	GCAGC	3 cut(s)	175, 697, 1015
BstV2I	GAAGAC	1 cut(s)	142
BstX2I	RGATCY	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	532
BsuRI	GGCC	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	4 cut(s)	313, 664, 791, 1020
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	7 cut(s)	73, 181, 200, 277, 542, 756, 909
CaiI	CAGNNNCTG	1 cut(s)	17
CfoI	GCGC	2 cut(s)	193, 489
Cfr42I	CCGCGG	1 cut(s)	169
CseI	GACGC	3 cut(s)	71, 861, 1026
CviAII	CATG	5 cut(s)	103, 737, 811, 901, 1044
DdeI	CTNAG	1 cut(s)	452
DpnI	GATC	4 cut(s)	151, 534, 585, 695
DpnII	GATC	4 cut(s)	149, 532, 583, 693
DraI	TTTAAA	1 cut(s)	945
DrdI	GACNNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	116
EciI	GGCGGA	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	1020
Eco57I	CTGAAG	1 cut(s)	246
Eco88I	CYCGRG	1 cut(s)	432
EcoRII	CCWGG	1 cut(s)	803
EcoT38I	GRGCYC	1 cut(s)	1020
FaeI	CATG	5 cut(s)	106, 740, 814, 904, 1047
FalI	AAGNNNNNCTT	2 cut(s)	938, 970
FaqI	GGGAC	2 cut(s)	416, 821
FatI	CATG	5 cut(s)	102, 736, 810, 900, 1043
FauI	CCCGC	1 cut(s)	188
FbaI	TGATCA	1 cut(s)	693
Fnu4HI	GCNGC	3 cut(s)	189, 686, 1004
FokI	GGATG	4 cut(s)	320, 651, 798, 1007
FriOI	GRGCYC	1 cut(s)	1020
Fsp4HI	GCNGC	3 cut(s)	189, 686, 1004
FspBI	CTAG	1 cut(s)	360
GlaI	GCGC	2 cut(s)	192, 488
GluI	GCNGC	3 cut(s)	189, 686, 1004
GsaI	CCCAGC	3 cut(s)	187, 540, 616
HaeIII	GGCC	1 cut(s)	50
HgaI	GACGC	3 cut(s)	71, 861, 1026
HhaI	GCGC	2 cut(s)	193, 489
Hin1II	CATG	5 cut(s)	106, 740, 814, 904, 1047
Hin6I	GCGC	2 cut(s)	191, 487
HinP1I	GCGC	2 cut(s)	191, 487
HincII	GTYRAC	1 cut(s)	917
HindII	GTYRAC	1 cut(s)	917
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	4 cut(s)	208, 590, 661, 709
HphI	GGTGA	2 cut(s)	144, 1032
Hpy166II	GTNNAC	2 cut(s)	722, 917
Hpy188I	TCNGA	2 cut(s)	146, 698
Hpy188III	TCNNGA	8 cut(s)	218, 432, 434, 587, 668, 776, 845, 955
Hpy8I	GTNNAC	2 cut(s)	722, 917
Hpy99I	CGWCG	2 cut(s)	62, 65
HpyAV	CCTTC	2 cut(s)	305, 361
HpyCH4III	ACNGT	3 cut(s)	81, 392, 961
HpyCH4V	TGCA	5 cut(s)	304, 416, 560, 754, 907
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 185, 199, 751, 904, 1009
HpyF3I	CTNAG	1 cut(s)	452
Hsp92II	CATG	5 cut(s)	106, 740, 814, 904, 1047
HspAI	GCGC	2 cut(s)	191, 487
Ksp22I	TGATCA	1 cut(s)	693
KspI	CCGCGG	1 cut(s)	169
Kzo9I	GATC	4 cut(s)	149, 532, 583, 693
LmnI	GCTCC	1 cut(s)	272
Lsp1109I	GCAGC	3 cut(s)	175, 697, 1015
LweI	GCATC	4 cut(s)	431, 626, 664, 894
MaeI	CTAG	1 cut(s)	360
MaeIII	GTNAC	5 cut(s)	98, 170, 355, 455, 1038
MalI	GATC	4 cut(s)	151, 534, 585, 695
MboI	GATC	4 cut(s)	149, 532, 583, 693
MboII	GAAGA	4 cut(s)	147, 159, 262, 902
MflI	RGATCY	1 cut(s)	532
MhlI	GDGCHC	2 cut(s)	322, 1020
MluCI	AATT	7 cut(s)	375, 408, 500, 555, 639, 872, 884
MlyI	GAGTC	1 cut(s)	718
MmeI	TCCRAC	1 cut(s)	321
MroXI	GAANNNNTTC	1 cut(s)	42
MseI	TTAA	6 cut(s)	162, 348, 503, 936, 944, 996
MslI	CAYNNNNRTG	1 cut(s)	669
MspA1I	CMGCKG	2 cut(s)	168, 183
MspR9I	CCNGG	1 cut(s)	805
Mva1269I	GAATGC	1 cut(s)	569
MvaI	CCWGG	1 cut(s)	805
MvnI	CGCG	2 cut(s)	168, 489
MwoI	GCNNNNNNNGC	6 cut(s)	47, 185, 199, 751, 904, 1009
NdeII	GATC	4 cut(s)	149, 532, 583, 693
NlaIII	CATG	5 cut(s)	106, 740, 814, 904, 1047
NlaIV	GGNNCC	1 cut(s)	534
NmuCI	GTSAC	2 cut(s)	455, 1038
NspI	RCATGY	1 cut(s)	814
PaeR7I	CTCGAG	1 cut(s)	432
PctI	GAATGC	1 cut(s)	569
PdmI	GAANNNNTTC	1 cut(s)	42
PfeI	GAWTC	3 cut(s)	208, 590, 661
PkrI	GCNGC	3 cut(s)	190, 687, 1005
PleI	GAGTC	1 cut(s)	717
PpsI	GAGTC	1 cut(s)	717
PsiI	TTATAA	1 cut(s)	554
Psp6I	CCWGG	1 cut(s)	803
PspFI	CCCAGC	3 cut(s)	183, 536, 612
PspGI	CCWGG	1 cut(s)	803
PspN4I	GGNNCC	1 cut(s)	534
PstNI	CAGNNNCTG	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	532
RseI	CAYNNNNRTG	1 cut(s)	669
SacII	CCGCGG	1 cut(s)	169
SaqAI	TTAA	6 cut(s)	162, 348, 503, 936, 944, 996
SatI	GCNGC	3 cut(s)	189, 686, 1004
Sau3AI	GATC	4 cut(s)	149, 532, 583, 693
SchI	GAGTC	1 cut(s)	718
ScrFI	CCNGG	1 cut(s)	805
SduI	GDGCHC	2 cut(s)	322, 1020
SfaNI	GCATC	4 cut(s)	431, 626, 664, 894
SfcI	CTRYAG	1 cut(s)	388
Sfr274I	CTCGAG	1 cut(s)	432
Sfr303I	CCGCGG	1 cut(s)	169
SgrBI	CCGCGG	1 cut(s)	169
SlaI	CTCGAG	1 cut(s)	432
SmiMI	CAYNNNNRTG	1 cut(s)	669
SmlI	CTYRAG	2 cut(s)	432, 843
SmoI	CTYRAG	2 cut(s)	432, 843
Sse9I	AATT	7 cut(s)	375, 408, 500, 555, 639, 872, 884
SsiI	CCGC	4 cut(s)	69, 166, 168, 181
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	803
TaaI	ACNGT	3 cut(s)	81, 392, 961
TaqI	TCGA	2 cut(s)	433, 712
TaqII	GACCGA	1 cut(s)	795
TasI	AATT	7 cut(s)	375, 408, 500, 555, 639, 872, 884
TfiI	GAWTC	3 cut(s)	208, 590, 661
Tru1I	TTAA	6 cut(s)	162, 348, 503, 936, 944, 996
Tru9I	TTAA	6 cut(s)	162, 348, 503, 936, 944, 996
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	2 cut(s)	455, 1038
TseI	GCWGC	3 cut(s)	188, 685, 1003
Tsp45I	GTSAC	2 cut(s)	455, 1038
TspDTI	ATGAA	5 cut(s)	119, 221, 324, 653, 897
TspRI	CASTG	1 cut(s)	18
XapI	RAATTY	1 cut(s)	884
XceI	RCATGY	1 cut(s)	814
XcmI	CCANNNNNNNNNTGG	1 cut(s)	18
XhoI	CTCGAG	1 cut(s)	432
XmnI	GAANNNNTTC	1 cut(s)	42
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.