Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009599

Physical Location & Seq

Genomic Coordinates Reverse (-)

9682841 .. 9686888

Gene Structure 4048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g10220.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCCGCCAGAGAAGAAGACGTGGCAGCGGAACTCGAAGCCGTGCAAGCAGTCTACGGCGACGACTGCGTCGTCCTCGATTCCTATCCTCCCCGTATCCACCTCCACATCAAACCTCGCACCGCCGACGTCGCTTCCCAACAGTTTGTGGAAGCTGTGATTGAAATTCGAGCAGGTCCTCAGTATCCGGAGAAACCGCCGCAAATTTATCTTGTAGATTCGAAGGGTCTGGATGAGGAAAGGCAGAAGCATCTCACAAATTATATAAGAGAAAAAGCATCCGAGCTTTCGTCTTGTTTGATGCTTGTGGCAGTTTGTGAGGAAGCAGTGGAGAAGCTGTCAGTTATGAATCACCCCGATGGCAATTGTCCACTCTGTTTGTGTCCTTTGGTCTCGGAGGAGGAGCAGAGTCAAGTCTTGCCATTTATGAAGTTGATGTCTTGTTTCCATTGCTTTCACAGTGAGTGCATTATTAGGTGGTGGAGTTGCATCCAAAAAGAAGCAAAGATCAATGTCTCGTCAACTGCAACTACACATTCTCTTAGAGAGACCAGAGATCGCAAAGATACACAGGGAGCTGTGGAAGAGAGTATGGGTAACTGTCCAGTCTGCCGCAAAGGCTTTCATGTAGAGGACTTAGAACATGTGCTTCATTTGGTTGACAATGAATTCTCTCGATTTAGCTTGGATGAAAATGAAGATGATGAGAGTCAGAAATTCCTTCAGTCTGATGCAGAGAAGGCCCGCAGAGAGAACTTTGATGCCATATTGAAGTTACAGCAAGAAAGTGGTGGTTTAATTGAACCTAAGAAAAATATTGCTGTTGTACCTGGTAGGCGTAATATCAATGAGCACAGGAGTTCCAGCTCACGGAAGCAGAGAGAGCAAAGAGGACGTAATCGAAGACAACCTTCCAAACAGTGGATTAGAAAAGAAAGTGACAGCGCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0031323 GO:0031326 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0050794 GO:0051059 GO:0051090 GO:0051091 GO:0051092 GO:0051171 GO:0051252 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RWD

Protein Analysis

318

Amino Acids

36.24

Weight (kDa)

5.74

Isoelectric Point (pI)

67.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RWD	PF05773	6 - 112	3.7e-17	RWD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60300 AT3G60300
fragaria_vesca	FvH4_7g10220 FvH4_7g10220 FvH4_7g10220 FvH4_7g10220
malus_domestica	MD02G1213400.v1.1
prunus_persica	Prupe.2G132200_v2.0.a1 Prupe.2G132200_v2.0.a1
pyrus_communis	pycom02g17440
rosa_chinensis	RchiOBHm_Chr1g0347961
rosa_laevigata	RLG00000028700
rosa_multiflora	Rmu_co7985412.1_g000001 Rmu_sc0007060.1_g000001 Rmu_sc0022322.1_g000001
rosa_roxburghii	Rroxscaffold_4G00307340
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG209100 Rh1BG173800 Rh1CG193300 Rh1DG203800
rosa_wichuraiana	Rw1G017390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	68, 71
AatII	GACGTC	1 cut(s)	132
Acc36I	ACCTGC	1 cut(s)	164
AccB7I	CCANNNNNTGG	1 cut(s)	921
AccI	GTMKAC	1 cut(s)	54
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	7 cut(s)	6, 29, 123, 197, 200, 613, 745
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	4 cut(s)	165, 204, 668, 716
AcuI	CTGAAG	1 cut(s)	707
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	1 cut(s)	828
AfiI	CCNNNNNNNGG	2 cut(s)	870, 921
AflIII	ACRYGT	1 cut(s)	643
AgsI	TTSAA	3 cut(s)	164, 772, 803
AjiI	CACGTC	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	829
AluBI	AGCT	6 cut(s)	155, 286, 337, 578, 684, 867
AluI	AGCT	6 cut(s)	155, 286, 337, 578, 684, 867
Alw21I	GWGCWC	1 cut(s)	855
Alw26I	GTCTC	3 cut(s)	397, 520, 542
Aor13HI	TCCGGA	1 cut(s)	187
AoxI	GGCC	2 cut(s)	3, 741
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	4 cut(s)	165, 204, 668, 716
AspLEI	GCGC	1 cut(s)	947
AspS9I	GGNCC	2 cut(s)	176, 742
AsuHPI	GGTGA	1 cut(s)	344
AsuII	TTCGAA	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	176
BbsI	GAAGAC	2 cut(s)	24, 910
Bbv12I	GWGCWC	1 cut(s)	855
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	1 cut(s)	353
BceAI	ACGGC	2 cut(s)	26, 73
BciT130I	CCWGG	1 cut(s)	831
BciVI	GTATCC	2 cut(s)	107, 195
BcoDI	GTCTC	3 cut(s)	397, 520, 542
BfuAI	ACCTGC	1 cut(s)	164
BfuI	GTATCC	2 cut(s)	107, 195
BglI	GCCNNNNNGGC	1 cut(s)	618
BisI	GCNGC	4 cut(s)	6, 27, 200, 613
BlsI	GCNGC	4 cut(s)	7, 28, 201, 614
Bme1390I	CCNGG	1 cut(s)	831
Bme18I	GGWCC	1 cut(s)	176
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	2 cut(s)	176, 742
BmrFI	CCNGG	1 cut(s)	831
BmsI	GCATC	6 cut(s)	259, 287, 291, 498, 721, 751
BpiI	GAAGAC	2 cut(s)	24, 910
Bpu14I	TTCGAA	1 cut(s)	221
BsaBI	GATNNNNATC	1 cut(s)	84
BsaHI	GRCGYC	1 cut(s)	129
BsaI	GGTCTC	2 cut(s)	397, 542
BsaWI	WCCGGW	1 cut(s)	187
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bsc4I	CCNNNNNNNGG	2 cut(s)	870, 921
Bse1I	ACTGG	1 cut(s)	605
Bse3DI	GCAATG	1 cut(s)	448
Bse8I	GATNNNNATC	1 cut(s)	84
BseAI	TCCGGA	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	831
BseGI	GGATG	4 cut(s)	238, 278, 489, 694
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	2 cut(s)	870, 921
BseMI	GCAATG	1 cut(s)	448
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	1 cut(s)	605
BseRI	GAGGAG	2 cut(s)	413, 416
BseXI	GCAGC	1 cut(s)	38
BshFI	GGCC	2 cut(s)	5, 743
BsiHKAI	GWGCWC	1 cut(s)	855
BsiSI	CCGG	1 cut(s)	188
BslI	CCNNNNNNNGG	2 cut(s)	870, 921
BsmAI	GTCTC	3 cut(s)	397, 520, 542
BsnI	GGCC	2 cut(s)	5, 743
Bso31I	GGTCTC	2 cut(s)	397, 542
Bsp119I	TTCGAA	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	855
Bsp13I	TCCGGA	1 cut(s)	187
Bsp143I	GATC	2 cut(s)	507, 556
BspACI	CCGC	7 cut(s)	6, 29, 123, 197, 200, 613, 745
BspANI	GGCC	2 cut(s)	5, 743
BspCNI	CTCAG	1 cut(s)	193
BspEI	TCCGGA	1 cut(s)	187
BspMI	ACCTGC	1 cut(s)	164
BspT104I	TTCGAA	1 cut(s)	221
BspTNI	GGTCTC	2 cut(s)	397, 542
BsrDI	GCAATG	1 cut(s)	448
BsrI	ACTGG	1 cut(s)	605
BssMI	GATC	2 cut(s)	507, 556
BssNI	GRCGYC	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	831
Bst4CI	ACNGT	4 cut(s)	144, 461, 602, 921
Bst6I	CTCTTC	1 cut(s)	579
BstACI	GRCGYC	1 cut(s)	129
BstBI	TTCGAA	1 cut(s)	221
BstC8I	GCNNGC	2 cut(s)	48, 745
BstDEI	CTNAG	4 cut(s)	180, 542, 637, 807
BstF5I	GGATG	4 cut(s)	238, 278, 489, 694
BstHHI	GCGC	1 cut(s)	947
BstKTI	GATC	2 cut(s)	510, 559
BstMAI	GTCTC	3 cut(s)	397, 520, 542
BstMBI	GATC	2 cut(s)	507, 556
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 66, 131, 618, 740, 883
BstNI	CCWGG	1 cut(s)	831
BstNSI	RCATGY	1 cut(s)	647
BstSCI	CCNGG	1 cut(s)	829
BstV1I	GCAGC	1 cut(s)	38
BstV2I	GAAGAC	2 cut(s)	24, 910
BsuI	GTATCC	2 cut(s)	107, 195
BsuRI	GGCC	2 cut(s)	5, 743
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	4 cut(s)	238, 278, 489, 694
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	3 cut(s)	333, 466, 926
BveI	ACCTGC	1 cut(s)	164
Cac8I	GCNNGC	2 cut(s)	48, 745
CfoI	GCGC	1 cut(s)	947
Cfr13I	GGNCC	2 cut(s)	176, 742
CseI	GACGC	1 cut(s)	58
CsiI	ACCWGGT	1 cut(s)	829
Csp6I	GTAC	1 cut(s)	827
CspCI	CAANNNNNGTGG	2 cut(s)	360, 395
CviAII	CATG	2 cut(s)	626, 644
CviQI	GTAC	1 cut(s)	827
DdeI	CTNAG	4 cut(s)	180, 542, 637, 807
DpnI	GATC	2 cut(s)	509, 558
DpnII	GATC	2 cut(s)	507, 556
DrdI	GACNNNNNNGTC	2 cut(s)	68, 71
DseDI	GACNNNNNNGTC	2 cut(s)	68, 71
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	579
EarI	CTCTTC	1 cut(s)	579
Eco31I	GGTCTC	2 cut(s)	397, 542
Eco47I	GGWCC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	707
EcoO109I	RGGNCCY	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	668
EcoRII	CCWGG	1 cut(s)	829
FaeI	CATG	2 cut(s)	629, 647
FaiI	YATR	8 cut(s)	264, 266, 347, 428, 593, 627, 645, 767
FalI	AAGNNNNNCTT	2 cut(s)	895, 927
FatI	CATG	2 cut(s)	625, 643
FauI	CCCGC	1 cut(s)	752
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	4 cut(s)	6, 27, 200, 613
FokI	GGATG	4 cut(s)	245, 265, 476, 701
Fsp4HI	GCNGC	4 cut(s)	6, 27, 200, 613
GlaI	GCGC	1 cut(s)	946
GluI	GCNGC	4 cut(s)	6, 27, 200, 613
HaeIII	GGCC	2 cut(s)	5, 743
HapII	CCGG	1 cut(s)	188
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	1 cut(s)	947
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	629, 647
Hin6I	GCGC	1 cut(s)	945
HinP1I	GCGC	1 cut(s)	945
HincII	GTYRAC	2 cut(s)	522, 661
HindII	GTYRAC	2 cut(s)	522, 661
HinfI	GANTC	5 cut(s)	80, 218, 349, 409, 709
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	4 cut(s)	55, 371, 522, 661
Hpy188I	TCNGA	4 cut(s)	283, 397, 714, 730
Hpy188III	TCNNGA	3 cut(s)	188, 230, 675
Hpy8I	GTNNAC	4 cut(s)	55, 371, 522, 661
Hpy99I	CGWCG	4 cut(s)	65, 74, 131, 134
HpyAV	CCTTC	4 cut(s)	217, 731, 733, 921
HpyCH4III	ACNGT	4 cut(s)	144, 461, 602, 921
HpyCH4IV	ACGT	3 cut(s)	21, 129, 895
HpyCH4V	TGCA	5 cut(s)	46, 468, 489, 527, 734
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 66, 131, 618, 740, 883
HpyF3I	CTNAG	4 cut(s)	180, 542, 637, 807
HpySE526I	ACGT	3 cut(s)	21, 129, 895
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	2 cut(s)	629, 647
HspAI	GCGC	1 cut(s)	945
Kpn2I	TCCGGA	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	507, 556
LmnI	GCTCC	2 cut(s)	403, 575
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	6 cut(s)	259, 287, 291, 498, 721, 751
MabI	ACCWGGT	1 cut(s)	829
MaeII	ACGT	3 cut(s)	21, 129, 895
MaeIII	GTNAC	3 cut(s)	596, 774, 938
MalI	GATC	2 cut(s)	509, 558
MboI	GATC	2 cut(s)	507, 556
MboII	GAAGA	5 cut(s)	26, 29, 596, 710, 915
MfeI	CAATTG	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	855
MluCI	AATT	7 cut(s)	165, 204, 259, 364, 668, 716, 798
MlyI	GAGTC	2 cut(s)	418, 718
MroI	TCCGGA	1 cut(s)	187
MseI	TTAA	1 cut(s)	797
MslI	CAYNNNNRTG	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	831
MunI	CAATTG	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	831
MwoI	GCNNNNNNNGC	6 cut(s)	47, 66, 131, 618, 740, 883
NdeII	GATC	2 cut(s)	507, 556
NlaIII	CATG	2 cut(s)	629, 647
NmuCI	GTSAC	1 cut(s)	938
NspI	RCATGY	1 cut(s)	647
NspV	TTCGAA	1 cut(s)	221
PciI	ACATGT	1 cut(s)	643
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PfeI	GAWTC	3 cut(s)	80, 218, 349
PflFI	GACNNNGTC	1 cut(s)	68
PflMI	CCANNNNNTGG	1 cut(s)	921
PkrI	GCNGC	4 cut(s)	7, 28, 201, 614
PleI	GAGTC	2 cut(s)	417, 717
PpsI	GAGTC	2 cut(s)	417, 717
PpuMI	RGGWCCY	1 cut(s)	176
PscI	ACATGT	1 cut(s)	643
Psp5II	RGGWCCY	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	829
PspGI	CCWGG	1 cut(s)	829
PspPI	GGNCC	2 cut(s)	176, 742
PspPPI	RGGWCCY	1 cut(s)	176
PsyI	GACNNNGTC	1 cut(s)	68
RsaI	GTAC	1 cut(s)	828
RsaNI	GTAC	1 cut(s)	827
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	797
SatI	GCNGC	4 cut(s)	6, 27, 200, 613
Sau3AI	GATC	2 cut(s)	507, 556
Sau96I	GGNCC	2 cut(s)	176, 742
SchI	GAGTC	2 cut(s)	418, 718
ScrFI	CCNGG	1 cut(s)	831
SduI	GDGCHC	1 cut(s)	855
SexAI	ACCWGGT	1 cut(s)	829
SfaNI	GCATC	6 cut(s)	259, 287, 291, 498, 721, 751
SfuI	TTCGAA	1 cut(s)	221
SinI	GGWCC	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	357
Sse9I	AATT	7 cut(s)	165, 204, 259, 364, 668, 716, 798
SsiI	CCGC	7 cut(s)	6, 29, 123, 197, 200, 613, 745
SspI	AATATT	1 cut(s)	817
StyD4I	CCNGG	1 cut(s)	829
TaaI	ACNGT	4 cut(s)	144, 461, 602, 921
TaiI	ACGT	3 cut(s)	24, 132, 898
TaqI	TCGA	6 cut(s)	36, 78, 169, 221, 676, 901
TasI	AATT	7 cut(s)	165, 204, 259, 364, 668, 716, 798
TauI	GCSGC	3 cut(s)	8, 202, 615
TfiI	GAWTC	3 cut(s)	80, 218, 349
Tru1I	TTAA	1 cut(s)	797
Tru9I	TTAA	1 cut(s)	797
TscAI	CASTG	3 cut(s)	333, 466, 926
TseFI	GTSAC	1 cut(s)	938
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	938
TspDTI	ATGAA	7 cut(s)	362, 443, 614, 641, 681, 705, 711
TspGWI	ACGGA	1 cut(s)	886
TspRI	CASTG	3 cut(s)	333, 466, 926
Tth111I	GACNNNGTC	1 cut(s)	68
Van91I	CCANNNNNTGG	1 cut(s)	921
VpaK11BI	GGWCC	1 cut(s)	176
XapI	RAATTY	4 cut(s)	165, 204, 668, 716
XceI	RCATGY	1 cut(s)	647
XmiI	GTMKAC	1 cut(s)	54
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.