Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7985412.1

Orthogroup ID

OG0009599

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 454

Gene Structure 454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7985412.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

agcttggatgagaatgaagacgatgacggtgagaaattcctgcagtctgatacagagaaggcccgaagagagaactttgaggccatatttaagttacagcaagaaaatgccaaagaacctcctgaagagcaacagagagaacccccagtcacgtcaggcatgcattctggtggttcctcagggaggcataataccaatgagcaaaggacttccagctcaaggaagcagagagagcaaagagtacgtaatccaagacgacctgccaaacagtggattagaaaagaaagtgacaaggcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0031323 GO:0031326 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0050794 GO:0051059 GO:0051090 GO:0051091 GO:0051092 GO:0051171 GO:0051252 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RWD

Protein Analysis

99

Amino Acids

11.55

Weight (kDa)

6.73

Isoelectric Point (pI)

82.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60300 AT3G60300
fragaria_vesca	FvH4_7g10220 FvH4_7g10220 FvH4_7g10220 FvH4_7g10220
malus_domestica	MD02G1213400.v1.1
prunus_persica	Prupe.2G132200_v2.0.a1 Prupe.2G132200_v2.0.a1
pyrus_communis	pycom02g17440
rosa_chinensis	RchiOBHm_Chr1g0347961
rosa_laevigata	RLG00000028700
rosa_multiflora	Rmu_co7985412.1_g000001 Rmu_sc0007060.1_g000001 Rmu_sc0022322.1_g000001
rosa_roxburghii	Rroxscaffold_4G00307340
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG209100 Rh1BG173800 Rh1CG193300 Rh1DG203800
rosa_wichuraiana	Rw1G017390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	268
AccB7I	CCANNNNNTGG	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	3 cut(s)	183, 219, 270
AjiI	CACGTC	1 cut(s)	153
AluBI	AGCT	2 cut(s)	3, 216
AluI	AGCT	2 cut(s)	3, 216
AoxI	GGCC	2 cut(s)	60, 81
ApoI	RAATTY	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	41
AxyI	CCTNAGG	1 cut(s)	178
BbsI	GAAGAC	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	41
BfuAI	ACCTGC	1 cut(s)	268
BmgBI	CACGTC	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	175
BmrI	ACTGGG	1 cut(s)	140
BmuI	ACTGGG	1 cut(s)	140
BpiI	GAAGAC	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	202
BsaAI	YACGTR	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	3 cut(s)	183, 219, 270
Bse1I	ACTGG	1 cut(s)	146
Bse21I	CCTNAGG	1 cut(s)	178
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	3 cut(s)	183, 219, 270
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	146
BshFI	GGCC	2 cut(s)	62, 83
BslI	CCNNNNNNNGG	3 cut(s)	183, 219, 270
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	2 cut(s)	62, 83
BspANI	GGCC	2 cut(s)	62, 83
BspCNI	CTCAG	1 cut(s)	191
BspLI	GGNNCC	1 cut(s)	175
BspMAI	CTGCAG	1 cut(s)	45
BspMI	ACCTGC	1 cut(s)	268
BspQI	GCTCTTC	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	146
Bst4CI	ACNGT	2 cut(s)	29, 270
Bst6I	CTCTTC	2 cut(s)	61, 120
BstBAI	YACGTR	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	1 cut(s)	178
BstENI	CCTNNNNNAGG	1 cut(s)	181
BstF5I	GGATG	1 cut(s)	13
BstMWI	GCNNNNNNNGC	1 cut(s)	232
BstNSI	RCATGY	1 cut(s)	163
BstSFI	CTRYAG	1 cut(s)	41
BstSNI	TACGTA	1 cut(s)	245
BstV2I	GAAGAC	1 cut(s)	24
Bsu36I	CCTNAGG	1 cut(s)	178
BsuRI	GGCC	2 cut(s)	62, 83
BtrI	CACGTC	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	275
BveI	ACCTGC	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	4 cut(s)	3, 62, 83, 216
CviKI_1	RGCY	4 cut(s)	3, 62, 83, 216
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	1 cut(s)	178
Eam1104I	CTCTTC	2 cut(s)	61, 120
EarI	CTCTTC	2 cut(s)	61, 120
Eco105I	TACGTA	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	144
Eco81I	CCTNAGG	1 cut(s)	178
EcoNI	CCTNNNNNAGG	1 cut(s)	181
EcoT22I	ATGCAT	1 cut(s)	165
FaeI	CATG	1 cut(s)	163
FaiI	YATR	4 cut(s)	86, 161, 189, 298
FatI	CATG	1 cut(s)	159
FokI	GGATG	1 cut(s)	20
HaeIII	GGCC	2 cut(s)	62, 83
Hin1II	CATG	1 cut(s)	163
HphI	GGTGA	1 cut(s)	41
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	52
HpyCH4III	ACNGT	2 cut(s)	29, 270
HpyCH4IV	ACGT	2 cut(s)	152, 244
HpyCH4V	TGCA	2 cut(s)	43, 163
HpyF10VI	GCNNNNNNNGC	1 cut(s)	232
HpyF3I	CTNAG	1 cut(s)	178
HpySE526I	ACGT	2 cut(s)	152, 244
Hsp92II	CATG	1 cut(s)	163
LguI	GCTCTTC	1 cut(s)	120
LpnPI	CCDG	8 cut(s)	53, 135, 141, 153, 159, 165, 226, 273
MaeII	ACGT	2 cut(s)	152, 244
MaeIII	GTNAC	3 cut(s)	93, 148, 287
MboII	GAAGA	3 cut(s)	29, 78, 137
MluCI	AATT	1 cut(s)	35
MnlI	CCTC	4 cut(s)	73, 129, 177, 187
Mph1103I	ATGCAT	1 cut(s)	165
MseI	TTAA	1 cut(s)	90
MslI	CAYNNNNRTG	1 cut(s)	168
Mva1269I	GAATGC	1 cut(s)	163
MwoI	GCNNNNNNNGC	1 cut(s)	232
NlaIII	CATG	1 cut(s)	163
NlaIV	GGNNCC	1 cut(s)	175
NmuCI	GTSAC	2 cut(s)	148, 287
NsiI	ATGCAT	1 cut(s)	165
NspI	RCATGY	1 cut(s)	163
PaeI	GCATGC	1 cut(s)	163
PciSI	GCTCTTC	1 cut(s)	120
PctI	GAATGC	1 cut(s)	163
PflMI	CCANNNNNTGG	1 cut(s)	270
Ppu21I	YACGTR	1 cut(s)	245
PspN4I	GGNNCC	1 cut(s)	175
PspPI	GGNCC	1 cut(s)	61
PstI	CTGCAG	1 cut(s)	45
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
RseI	CAYNNNNRTG	1 cut(s)	168
SapI	GCTCTTC	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	90
Sau96I	GGNCC	1 cut(s)	61
SetI	ASST	5 cut(s)	121, 155, 218, 247, 262
SfcI	CTRYAG	1 cut(s)	41
SmiMI	CAYNNNNRTG	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
SnaBI	TACGTA	1 cut(s)	245
SphI	GCATGC	1 cut(s)	163
Sse9I	AATT	1 cut(s)	35
TaaI	ACNGT	2 cut(s)	29, 270
TaiI	ACGT	2 cut(s)	155, 247
TasI	AATT	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	1 cut(s)	275
TseFI	GTSAC	2 cut(s)	148, 287
Tsp45I	GTSAC	2 cut(s)	148, 287
TspDTI	ATGAA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	275
Van91I	CCANNNNNTGG	1 cut(s)	270
XagI	CCTNNNNNAGG	1 cut(s)	181
XapI	RAATTY	1 cut(s)	35
XceI	RCATGY	1 cut(s)	163
Zsp2I	ATGCAT	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.