Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007060.1

Orthogroup ID

OG0009599

Physical Location & Seq

Genomic Coordinates Reverse (-)

2662 .. 6808

Gene Structure 4147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007060.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

atggccgcccacgaagaagacgtagcggcagaactcgaagccgtgcaagcagtctacggcgacgattgcgtccttctcgattcctatcctccccatctccacctccacatcaaaccccgcaccgccgacgtcgcttcccaacagtttgtggaagctgttattgaaattcgagcgggttctcagtatccggaggaaccgccgcatatttatgttatagattcaaagggtctggatgaggaaaggcaaaagcatcttacaaattatataagagaaaaagcacgcgagctatcgtcttgtttgatgcttgtggcagtttgtgaggaagcagtggagaagctctcagctatgaatcaccctgatggcgattgtcctctgtgtttgtgtcctttggtctcagaggaggagcagagtaaagtcttgccatttatgaagttgatgtcttgtttccattgctttcacagtgagtgcattattaggtggtggagttgcatccaaacagaagcaaaaaccaacgcctcatcaagtgcgcatctgcgttctattagagagaccagagatcacaaagatacaccacgagctgtggaagagagtatgggaaactgtccagtttgtcgcaaaggctttcatgcgcaggacttagaacatgtgcttcatttggttggcaatgatttctctcaatttagcttggatgagaatgaagacgatgacggtgagaaattcctgcagtctgatacagagaaggcccgaagagagaactttgaggccatatttaagttacagcaagaaaatggtggtttaattgaacctaagaaaaatgttgttatcgtacctggtatgtttcttacaccaccagttgcaccttctaactctgtggcagccaaagaacctcctgaagagcaacagagagaacccccagtcacgtcaggcatgcattctggtggttcctcagggaggcataataccaatgagcaaaggacttccagctcaaggaagcagagagagcaaagagttattacactattgatcagcaatctcattgatcagccgaccgacgacgccggcggtcagcgacttcaccgatcaactgataaatcccaccgccatctcacaagcaactccacaaccacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0031323 GO:0031326 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0050794 GO:0051059 GO:0051090 GO:0051091 GO:0051092 GO:0051171 GO:0051252 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RWD

Protein Analysis

376

Amino Acids

42.18

Weight (kDa)

5.39

Isoelectric Point (pI)

61.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60300 AT3G60300
fragaria_vesca	FvH4_7g10220 FvH4_7g10220 FvH4_7g10220 FvH4_7g10220
malus_domestica	MD02G1213400.v1.1
prunus_persica	Prupe.2G132200_v2.0.a1 Prupe.2G132200_v2.0.a1
pyrus_communis	pycom02g17440
rosa_chinensis	RchiOBHm_Chr1g0347961
rosa_laevigata	RLG00000028700
rosa_multiflora	Rmu_co7985412.1_g000001 Rmu_sc0007060.1_g000001 Rmu_sc0022322.1_g000001
rosa_roxburghii	Rroxscaffold_4G00307340
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG209100 Rh1BG173800 Rh1CG193300 Rh1DG203800
rosa_wichuraiana	Rw1G017390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
AatII	GACGTC	1 cut(s)	132
Acc16I	TGCGCA	2 cut(s)	528, 630
AccBSI	CCGCTC	1 cut(s)	173
AccI	GTMKAC	1 cut(s)	54
AccII	CGCG	1 cut(s)	282
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	9 cut(s)	6, 26, 118, 123, 173, 197, 200, 1062, 1099
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	165, 716
AcuI	CTGAAG	1 cut(s)	912
AcyI	GRCGYC	2 cut(s)	129, 1056
AfaI	GTAC	1 cut(s)	828
AfiI	CCNNNNNNNGG	2 cut(s)	951, 987
AflIII	ACRYGT	1 cut(s)	643
AgsI	TTSAA	3 cut(s)	164, 222, 803
AjiI	CACGTC	1 cut(s)	921
AjnI	CCWGG	1 cut(s)	829
AluBI	AGCT	7 cut(s)	155, 286, 337, 344, 578, 684, 984
AluI	AGCT	7 cut(s)	155, 286, 337, 344, 578, 684, 984
Alw26I	GTCTC	2 cut(s)	397, 542
Aor13HI	TCCGGA	1 cut(s)	187
AoxI	GGCC	3 cut(s)	3, 741, 762
ApeKI	GCWGC	1 cut(s)	875
ApoI	RAATTY	2 cut(s)	165, 716
AspLEI	GCGC	2 cut(s)	529, 631
AspS9I	GGNCC	1 cut(s)	742
AsuHPI	GGTGA	3 cut(s)	344, 722, 1067
AxyI	CCTNAGG	1 cut(s)	946
BauI	CACGAG	1 cut(s)	573
BbsI	GAAGAC	2 cut(s)	24, 705
BbvI	GCAGC	1 cut(s)	887
BccI	CCATC	3 cut(s)	102, 353, 1110
BceAI	ACGGC	2 cut(s)	26, 73
BciT130I	CCWGG	1 cut(s)	831
BciVI	GTATCC	1 cut(s)	195
BclI	TGATCA	2 cut(s)	1023, 1039
BcoDI	GTCTC	2 cut(s)	397, 542
BfmI	CTRYAG	1 cut(s)	722
BfuI	GTATCC	1 cut(s)	195
BisI	GCNGC	4 cut(s)	6, 27, 200, 876
BlsI	GCNGC	4 cut(s)	7, 28, 201, 877
Bme1390I	CCNGG	1 cut(s)	831
BmgBI	CACGTC	1 cut(s)	921
BmgT120I	GGNCC	1 cut(s)	742
BmiI	GGNNCC	2 cut(s)	195, 943
BmrFI	CCNGG	1 cut(s)	831
BmrI	ACTGGG	1 cut(s)	908
BmsI	GCATC	4 cut(s)	259, 291, 498, 538
BmuI	ACTGGG	1 cut(s)	908
BpiI	GAAGAC	2 cut(s)	24, 705
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
BpuEI	CTTGAG	1 cut(s)	970
BsaBI	GATNNNNATC	1 cut(s)	84
BsaHI	GRCGYC	2 cut(s)	129, 1056
BsaI	GGTCTC	2 cut(s)	397, 542
BsaWI	WCCGGW	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	2 cut(s)	951, 987
Bse118I	RCCGGY	1 cut(s)	1058
Bse1I	ACTGG	3 cut(s)	605, 851, 914
Bse21I	CCTNAGG	1 cut(s)	946
Bse3DI	GCAATG	2 cut(s)	448, 670
Bse8I	GATNNNNATC	1 cut(s)	84
BseAI	TCCGGA	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	831
BseGI	GGATG	3 cut(s)	238, 489, 694
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	2 cut(s)	951, 987
BseMI	GCAATG	2 cut(s)	448, 670
BseMII	CTCAG	4 cut(s)	194, 354, 408, 960
BseNI	ACTGG	3 cut(s)	605, 851, 914
BseRI	GAGGAG	2 cut(s)	413, 416
BseXI	GCAGC	1 cut(s)	887
Bsh1236I	CGCG	1 cut(s)	282
Bsh1285I	CGRYCG	1 cut(s)	1050
BshFI	GGCC	3 cut(s)	5, 743, 764
BsiEI	CGRYCG	1 cut(s)	1050
BsiSI	CCGG	2 cut(s)	188, 1059
BslI	CCNNNNNNNGG	2 cut(s)	951, 987
BsmAI	GTCTC	2 cut(s)	397, 542
BsmI	GAATGC	1 cut(s)	931
BsnI	GGCC	3 cut(s)	5, 743, 764
Bso31I	GGTCTC	2 cut(s)	397, 542
Bsp13I	TCCGGA	1 cut(s)	187
Bsp143I	GATC	4 cut(s)	556, 1023, 1039, 1079
BspACI	CCGC	9 cut(s)	6, 26, 118, 123, 173, 197, 200, 1062, 1099
BspANI	GGCC	3 cut(s)	5, 743, 764
BspCNI	CTCAG	4 cut(s)	193, 353, 407, 959
BspEI	TCCGGA	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	2 cut(s)	195, 943
BspMAI	CTGCAG	1 cut(s)	726
BspQI	GCTCTTC	1 cut(s)	888
BspTNI	GGTCTC	2 cut(s)	397, 542
BsrBI	CCGCTC	1 cut(s)	173
BsrDI	GCAATG	2 cut(s)	448, 670
BsrFI	RCCGGY	1 cut(s)	1058
BsrI	ACTGG	3 cut(s)	605, 851, 914
BssAI	RCCGGY	1 cut(s)	1058
BssMI	GATC	4 cut(s)	556, 1023, 1039, 1079
BssNI	GRCGYC	2 cut(s)	129, 1056
BssSI	CACGAG	1 cut(s)	573
Bst2BI	CACGAG	1 cut(s)	573
Bst2UI	CCWGG	1 cut(s)	831
Bst4CI	ACNGT	4 cut(s)	144, 461, 602, 710
Bst6I	CTCTTC	3 cut(s)	579, 742, 888
BstACI	GRCGYC	2 cut(s)	129, 1056
BstC8I	GCNNGC	5 cut(s)	48, 280, 284, 929, 1060
BstDEI	CTNAG	6 cut(s)	180, 340, 394, 637, 807, 946
BstENI	CCTNNNNNAGG	1 cut(s)	949
BstF5I	GGATG	3 cut(s)	238, 489, 694
BstFNI	CGCG	1 cut(s)	282
BstHHI	GCGC	2 cut(s)	529, 631
BstKTI	GATC	4 cut(s)	559, 1026, 1042, 1082
BstMAI	GTCTC	2 cut(s)	397, 542
BstMBI	GATC	4 cut(s)	556, 1023, 1039, 1079
BstMCI	CGRYCG	1 cut(s)	1050
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 66, 131, 1000
BstNI	CCWGG	1 cut(s)	831
BstNSI	RCATGY	2 cut(s)	647, 931
BstSCI	CCNGG	1 cut(s)	829
BstSFI	CTRYAG	1 cut(s)	722
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	1 cut(s)	887
BstV2I	GAAGAC	2 cut(s)	24, 705
Bsu36I	CCTNAGG	1 cut(s)	946
BsuI	GTATCC	1 cut(s)	195
BsuRI	GGCC	3 cut(s)	5, 743, 764
BtrI	CACGTC	1 cut(s)	921
BtsCI	GGATG	3 cut(s)	238, 489, 694
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	2 cut(s)	333, 466
Cac8I	GCNNGC	5 cut(s)	48, 280, 284, 929, 1060
CfoI	GCGC	2 cut(s)	529, 631
Cfr10I	RCCGGY	1 cut(s)	1058
Cfr13I	GGNCC	1 cut(s)	742
CseI	GACGC	2 cut(s)	58, 1064
CsiI	ACCWGGT	1 cut(s)	829
Csp6I	GTAC	1 cut(s)	827
CviAII	CATG	3 cut(s)	626, 644, 928
CviQI	GTAC	1 cut(s)	827
DdeI	CTNAG	6 cut(s)	180, 340, 394, 637, 807, 946
DpnI	GATC	4 cut(s)	558, 1025, 1041, 1081
DpnII	GATC	4 cut(s)	556, 1023, 1039, 1079
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	579, 742, 888
EarI	CTCTTC	3 cut(s)	579, 742, 888
Eco31I	GGTCTC	2 cut(s)	397, 542
Eco57I	CTGAAG	1 cut(s)	912
Eco81I	CCTNAGG	1 cut(s)	946
EcoNI	CCTNNNNNAGG	1 cut(s)	949
EcoRII	CCWGG	1 cut(s)	829
EcoT22I	ATGCAT	1 cut(s)	933
FaeI	CATG	3 cut(s)	629, 647, 931
FatI	CATG	3 cut(s)	625, 643, 927
FauI	CCCGC	2 cut(s)	125, 166
FbaI	TGATCA	2 cut(s)	1023, 1039
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	4 cut(s)	6, 27, 200, 876
FokI	GGATG	3 cut(s)	245, 476, 701
Fsp4HI	GCNGC	4 cut(s)	6, 27, 200, 876
FspAI	RTGCGCAY	1 cut(s)	528
FspI	TGCGCA	2 cut(s)	528, 630
GlaI	GCGC	2 cut(s)	528, 630
GluI	GCNGC	4 cut(s)	6, 27, 200, 876
HaeIII	GGCC	3 cut(s)	5, 743, 764
HapII	CCGG	2 cut(s)	188, 1059
HgaI	GACGC	2 cut(s)	58, 1064
HhaI	GCGC	2 cut(s)	529, 631
Hin1I	GRCGYC	2 cut(s)	129, 1056
Hin1II	CATG	3 cut(s)	629, 647, 931
Hin6I	GCGC	2 cut(s)	527, 629
HinP1I	GCGC	2 cut(s)	527, 629
HinfI	GANTC	3 cut(s)	80, 218, 349
HpaII	CCGG	2 cut(s)	188, 1059
HphI	GGTGA	3 cut(s)	344, 722, 1067
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	2 cut(s)	397, 730
Hpy188III	TCNNGA	4 cut(s)	77, 188, 230, 890
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	5 cut(s)	65, 131, 134, 1055, 1058
HpyAV	CCTTC	3 cut(s)	83, 733, 870
HpyCH4III	ACNGT	4 cut(s)	144, 461, 602, 710
HpyCH4IV	ACGT	3 cut(s)	21, 129, 920
HpyCH4V	TGCA	6 cut(s)	46, 468, 489, 724, 857, 931
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 66, 131, 1000
HpyF3I	CTNAG	6 cut(s)	180, 340, 394, 637, 807, 946
HpySE526I	ACGT	3 cut(s)	21, 129, 920
Hsp92I	GRCGYC	2 cut(s)	129, 1056
Hsp92II	CATG	3 cut(s)	629, 647, 931
HspAI	GCGC	2 cut(s)	527, 629
Kpn2I	TCCGGA	1 cut(s)	187
KroI	GCCGGC	1 cut(s)	1058
KroNI	GCCGGC	1 cut(s)	1060
Ksp22I	TGATCA	2 cut(s)	1023, 1039
Kzo9I	GATC	4 cut(s)	556, 1023, 1039, 1079
LguI	GCTCTTC	1 cut(s)	888
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	1 cut(s)	887
LweI	GCATC	4 cut(s)	259, 291, 498, 538
MabI	ACCWGGT	1 cut(s)	829
MaeII	ACGT	3 cut(s)	21, 129, 920
MaeIII	GTNAC	2 cut(s)	774, 916
MalI	GATC	4 cut(s)	558, 1025, 1041, 1081
MbiI	CCGCTC	1 cut(s)	173
MboI	GATC	4 cut(s)	556, 1023, 1039, 1079
MboII	GAAGA	6 cut(s)	26, 29, 596, 710, 759, 905
MluCI	AATT	5 cut(s)	165, 259, 677, 716, 798
Mph1103I	ATGCAT	1 cut(s)	933
MreI	CGCCGGCG	1 cut(s)	1058
MroI	TCCGGA	1 cut(s)	187
MroNI	GCCGGC	1 cut(s)	1058
MseI	TTAA	2 cut(s)	771, 797
MslI	CAYNNNNRTG	3 cut(s)	207, 357, 936
MspI	CCGG	2 cut(s)	188, 1059
MspR9I	CCNGG	1 cut(s)	831
Mva1269I	GAATGC	1 cut(s)	931
MvaI	CCWGG	1 cut(s)	831
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	4 cut(s)	47, 66, 131, 1000
NaeI	GCCGGC	1 cut(s)	1060
NdeII	GATC	4 cut(s)	556, 1023, 1039, 1079
NgoMIV	GCCGGC	1 cut(s)	1058
NlaIII	CATG	3 cut(s)	629, 647, 931
NlaIV	GGNNCC	2 cut(s)	195, 943
NmuCI	GTSAC	1 cut(s)	916
NsbI	TGCGCA	2 cut(s)	528, 630
NsiI	ATGCAT	1 cut(s)	933
NspI	RCATGY	2 cut(s)	647, 931
PaeI	GCATGC	1 cut(s)	931
PciI	ACATGT	1 cut(s)	643
PciSI	GCTCTTC	1 cut(s)	888
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PctI	GAATGC	1 cut(s)	931
PdiI	GCCGGC	1 cut(s)	1060
PfeI	GAWTC	3 cut(s)	80, 218, 349
PkrI	GCNGC	4 cut(s)	7, 28, 201, 877
PscI	ACATGT	1 cut(s)	643
Psp6I	CCWGG	1 cut(s)	829
PspGI	CCWGG	1 cut(s)	829
PspN4I	GGNNCC	2 cut(s)	195, 943
PspPI	GGNCC	1 cut(s)	742
PstI	CTGCAG	1 cut(s)	726
RsaI	GTAC	1 cut(s)	828
RsaNI	GTAC	1 cut(s)	827
RseI	CAYNNNNRTG	3 cut(s)	207, 357, 936
SapI	GCTCTTC	1 cut(s)	888
SaqAI	TTAA	2 cut(s)	771, 797
SatI	GCNGC	4 cut(s)	6, 27, 200, 876
Sau3AI	GATC	4 cut(s)	556, 1023, 1039, 1079
Sau96I	GGNCC	1 cut(s)	742
ScrFI	CCNGG	1 cut(s)	831
SexAI	ACCWGGT	1 cut(s)	829
SfaNI	GCATC	4 cut(s)	259, 291, 498, 538
SfcI	CTRYAG	1 cut(s)	722
SgrAI	CRCCGGYG	1 cut(s)	1058
SmiMI	CAYNNNNRTG	3 cut(s)	207, 357, 936
SmlI	CTYRAG	1 cut(s)	985
SmoI	CTYRAG	1 cut(s)	985
SphI	GCATGC	1 cut(s)	931
Sse9I	AATT	5 cut(s)	165, 259, 677, 716, 798
SsiI	CCGC	9 cut(s)	6, 26, 118, 123, 173, 197, 200, 1062, 1099
StyD4I	CCNGG	1 cut(s)	829
TaaI	ACNGT	4 cut(s)	144, 461, 602, 710
TaiI	ACGT	3 cut(s)	24, 132, 923
TaqI	TCGA	3 cut(s)	36, 78, 169
TaqII	GACCGA	1 cut(s)	1064
TasI	AATT	5 cut(s)	165, 259, 677, 716, 798
TauI	GCSGC	3 cut(s)	8, 29, 202
TfiI	GAWTC	3 cut(s)	80, 218, 349
Tru1I	TTAA	2 cut(s)	771, 797
Tru9I	TTAA	2 cut(s)	771, 797
TscAI	CASTG	2 cut(s)	333, 466
TseFI	GTSAC	1 cut(s)	916
TseI	GCWGC	1 cut(s)	875
Tsp45I	GTSAC	1 cut(s)	916
TspDTI	ATGAA	5 cut(s)	362, 443, 614, 641, 711
TspRI	CASTG	2 cut(s)	333, 466
XagI	CCTNNNNNAGG	1 cut(s)	949
XapI	RAATTY	2 cut(s)	165, 716
XceI	RCATGY	2 cut(s)	647, 931
XmiI	GTMKAC	1 cut(s)	54
ZraI	GACGTC	1 cut(s)	130
Zsp2I	ATGCAT	1 cut(s)	933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.