Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0009599

Physical Location & Seq

Genomic Coordinates Reverse (-)

23242447 .. 23246046

Gene Structure 3600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1213400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCACCATTTGTGGACACTCCCAGACTTTCATATTCAGGAGACTGATACATTAAGATATGTGTTCAGGAAGCAGTGGAAAAGCTCTCTGTTATGCCCTGATGGAGACTGTCCATTGTGTTTGTATCCTTTGGTCCCAGAAGATGAGCAGAAAAATGCTTTGCCATTTATGAAGTTGATGTCTTGTTTCCATTGCTTCCACAGCATGATTCGTAAGGATTACTTGAGAATTGGGATAGGTTATCTGGAAGAGGCTTATGGAAGGCTTTTGCATAAGCTGAAGCATGTTCTTGATAAAAGTATGTGGGATCCCAGAATGCCCATAGTTGAAAAATGTGGAGCTTCGGAAGAAAGTATGGGAAACTGCCCCGTCTGCCGTAAAGTTTTTCATACTCAGGACTTCGAGTACGTGCTCCACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0031323 GO:0031326 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0050794 GO:0051059 GO:0051090 GO:0051091 GO:0051092 GO:0051171 GO:0051252 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RWD

Protein Analysis

141

Amino Acids

16.65

Weight (kDa)

6.74

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60300 AT3G60300
fragaria_vesca	FvH4_7g10220 FvH4_7g10220 FvH4_7g10220 FvH4_7g10220
malus_domestica	MD02G1213400.v1.1
prunus_persica	Prupe.2G132200_v2.0.a1 Prupe.2G132200_v2.0.a1
pyrus_communis	pycom02g17440
rosa_chinensis	RchiOBHm_Chr1g0347961
rosa_laevigata	RLG00000028700
rosa_multiflora	Rmu_co7985412.1_g000001 Rmu_sc0007060.1_g000001 Rmu_sc0022322.1_g000001
rosa_roxburghii	Rroxscaffold_4G00307340
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG209100 Rh1BG173800 Rh1CG193300 Rh1DG203800
rosa_wichuraiana	Rw1G017390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	302, 315
AcuI	CTGAAG	1 cut(s)	299
AfaI	GTAC	1 cut(s)	407
AgsI	TTSAA	1 cut(s)	329
AluBI	AGCT	3 cut(s)	84, 277, 341
AluI	AGCT	3 cut(s)	84, 277, 341
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	2 cut(s)	35, 99
AlwI	GGATC	2 cut(s)	302, 315
AspS9I	GGNCC	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	133
BamHI	GGATCC	1 cut(s)	307
Bbv12I	GWGCWC	1 cut(s)	414
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	1 cut(s)	360
BciVI	GTATCC	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	35, 99
BfuI	GTATCC	1 cut(s)	135
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	2 cut(s)	135, 309
BpuEI	CTTGAG	1 cut(s)	244
BsaAI	YACGTR	1 cut(s)	409
Bse3DI	GCAATG	1 cut(s)	190
BseMI	GCAATG	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	407
BsiHKAI	GWGCWC	1 cut(s)	414
BslFI	GGGAC	1 cut(s)	119
BsmAI	GTCTC	2 cut(s)	35, 99
BsmFI	GGGAC	1 cut(s)	119
BsmI	GAATGC	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	1 cut(s)	307
BspCNI	CTCAG	1 cut(s)	406
BspLI	GGNNCC	2 cut(s)	135, 309
BspPI	GGATC	2 cut(s)	302, 315
BsrDI	GCAATG	1 cut(s)	190
BssMI	GATC	1 cut(s)	307
Bst4CI	ACNGT	1 cut(s)	110
Bst6I	CTCTTC	1 cut(s)	243
BstBAI	YACGTR	1 cut(s)	409
BstDEI	CTNAG	1 cut(s)	393
BstKTI	GATC	1 cut(s)	310
BstMAI	GTCTC	2 cut(s)	35, 99
BstMBI	GATC	1 cut(s)	307
BstMWI	GCNNNNNNNGC	2 cut(s)	201, 372
BstNSI	RCATGY	1 cut(s)	287
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BsuI	GTATCC	1 cut(s)	135
BtsI	GCAGTG	1 cut(s)	80
BtsIMutI	CAGTG	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	133
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	2 cut(s)	205, 284
CviJI	RGCY	5 cut(s)	84, 254, 265, 277, 341
CviKI_1	RGCY	5 cut(s)	84, 254, 265, 277, 341
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	299
FaeI	CATG	2 cut(s)	208, 287
FalI	AAGNNNNNCTT	2 cut(s)	206, 238
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	2 cut(s)	204, 283
Hin1II	CATG	2 cut(s)	208, 287
HinfI	GANTC	1 cut(s)	208
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	1 cut(s)	346
Hpy188III	TCNNGA	5 cut(s)	38, 67, 245, 290, 395
Hpy8I	GTNNAC	1 cut(s)	15
HpyAV	CCTTC	1 cut(s)	255
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	2 cut(s)	4, 271
HpyF10VI	GCNNNNNNNGC	2 cut(s)	201, 372
HpyF3I	CTNAG	1 cut(s)	393
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	2 cut(s)	208, 287
Kzo9I	GATC	1 cut(s)	307
LmnI	GCTCC	2 cut(s)	338, 417
LpnPI	CCDG	8 cut(s)	23, 36, 52, 111, 150, 230, 325, 380
MaeII	ACGT	1 cut(s)	408
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	3 cut(s)	152, 260, 359
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	1 cut(s)	228
MnlI	CCTC	1 cut(s)	244
MseI	TTAA	1 cut(s)	53
Mva1269I	GAATGC	1 cut(s)	321
MwoI	GCNNNNNNNGC	2 cut(s)	201, 372
NdeII	GATC	1 cut(s)	307
NlaIII	CATG	2 cut(s)	208, 287
NlaIV	GGNNCC	2 cut(s)	135, 309
NspI	RCATGY	1 cut(s)	287
PctI	GAATGC	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	208
Ppu21I	YACGTR	1 cut(s)	409
PspN4I	GGNNCC	2 cut(s)	135, 309
PspPI	GGNCC	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
SaqAI	TTAA	1 cut(s)	53
Sau3AI	GATC	1 cut(s)	307
Sau96I	GGNCC	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	414
SetI	ASST	5 cut(s)	86, 241, 279, 343, 411
SinI	GGWCC	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
Sse9I	AATT	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	110
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	1 cut(s)	402
TasI	AATT	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TscAI	CASTG	1 cut(s)	80
TspDTI	ATGAA	3 cut(s)	20, 185, 377
TspRI	CASTG	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	133
XceI	RCATGY	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.