Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009599

Physical Location & Seq

Genomic Coordinates Reverse (-)

19048079 .. 19053640

Gene Structure 5562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G132200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGCCGACGCCGCCGCCCAAGAAGAAGAAGTGGCAGCAGAAGTGGAGGCCGTACAAGCAGTGTACGGCGACGATTGTGTGGTTCTCGAATCGTACCCTCCTCATCTCCACCTCTACATCAAACCTCGCACCGCCGATGTCGCTTCACAGCAGTTTGTGGAAGCTGTTATTGGAGTTCGAGCAGGTTCTCAGTATCCGAATGAACCGCCACATATTGAACTTTTAGATTCAAAGGGTCTTGATTTTCAGAGGCAAAAACATCTAACGAATTCGATACGGGACAGAGCATGCGACCTCTCATCTTGTTTAATGCTTGTGGCGATTTGTGAGGAAGCAGTGGAGAAGCTCTCTGTTATGAATCACCCTGATGGAGATTGTCCATTGTGTTTGTATCCTTTGGTCCCAGAAGACGAGCAGAGTAAAGTTTTGCCATTTATGAAGTTGATGTCTTGTTTCCATTGCTTTCACAGTGAGTGCATTATTAGGTGGTGGAATTGGATTCAAACAGAAGAAAGAAGCAATGCCAGTGATTCATCAAGTGCACATGTGCCTCCTATTAGAGACTTGCGAAATCATAAAGATACACGTGGAGCTGTGGAAGAGAGTATGGGAAACTGTCCAGTTTGCCGTAAAGTTTTTCATGCCGAGGATTTTGAACACGTGCTCAACTTGGTTGGCAATCATTCCTCACATTTGAGTCTGAACGATAATGAAGACGATGACGGTGAGAAACTCCTGCAGTCTGAGTCAGAGAATGCACGGCGACAAAACTTTGAGGCCCTATTGAAGTCACAGCAAGAAAACAGTGGTTTAATTGAACCTAAAAAAAATATTGTTGTCTTGCCTGGTATGTTACTTCCACCACCGGTTGCATCATCCACATCCGAGACAGCCAAAGAATCTGCTGAAGAACAACAAAGAGAGCCCCCAGTCACCTCAGAAATGCATTCTGGTGGTTCCTCAGATAGGCATTCTGGTGGTTCCTCAGATGGGCCTAATACCCATGAGCAGAGGAGTTCCACCTCAAGGGAGCGGAGAGTACGTAATACAAGAAGACCCGTCAAACAGTGGATAAAGAAAGAGAGTGGCAGGGCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0031323 GO:0031326 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0050794 GO:0051059 GO:0051090 GO:0051091 GO:0051092 GO:0051171 GO:0051252 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RWD

Protein Analysis

367

Amino Acids

40.92

Weight (kDa)

5.26

Isoelectric Point (pI)

68.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60300 AT3G60300
fragaria_vesca	FvH4_7g10220 FvH4_7g10220 FvH4_7g10220 FvH4_7g10220
malus_domestica	MD02G1213400.v1.1
prunus_persica	Prupe.2G132200_v2.0.a1 Prupe.2G132200_v2.0.a1
pyrus_communis	pycom02g17440
rosa_chinensis	RchiOBHm_Chr1g0347961
rosa_laevigata	RLG00000028700
rosa_multiflora	Rmu_co7985412.1_g000001 Rmu_sc0007060.1_g000001 Rmu_sc0022322.1_g000001
rosa_roxburghii	Rroxscaffold_4G00307340
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG209100 Rh1BG173800 Rh1CG193300 Rh1DG203800
rosa_wichuraiana	Rw1G017390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	173
AccBSI	CCGCTC	1 cut(s)	1033
AciI	CCGC	5 cut(s)	12, 15, 132, 206, 1033
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	268
AcuI	CTGAAG	1 cut(s)	927
AcvI	CACGTG	2 cut(s)	587, 661
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	4 cut(s)	54, 65, 95, 1041
AfiI	CCNNNNNNNGG	3 cut(s)	966, 990, 1026
AflIII	ACRYGT	3 cut(s)	544, 584, 658
AgeI	ACCGGT	1 cut(s)	865
AgsI	TTSAA	6 cut(s)	218, 231, 503, 656, 787, 818
AjnI	CCWGG	1 cut(s)	844
AjuI	GAANNNNNNNTTGG	2 cut(s)	153, 185
AluBI	AGCT	3 cut(s)	164, 346, 593
AluI	AGCT	3 cut(s)	164, 346, 593
Alw21I	GWGCWC	2 cut(s)	544, 666
Alw26I	GTCTC	2 cut(s)	555, 881
Alw44I	GTGCAC	1 cut(s)	540
AoxI	GGCC	4 cut(s)	3, 48, 777, 992
ApaLI	GTGCAC	1 cut(s)	540
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	268
AsiGI	ACCGGT	1 cut(s)	865
AspS9I	GGNCC	3 cut(s)	400, 778, 992
AsuHPI	GGTGA	3 cut(s)	353, 737, 925
AvaII	GGWCC	1 cut(s)	400
BaeGI	GKGCMC	1 cut(s)	544
BanII	GRGCYC	1 cut(s)	927
BbrPI	CACGTG	2 cut(s)	587, 661
BbsI	GAAGAC	3 cut(s)	414, 720, 1060
Bbv12I	GWGCWC	2 cut(s)	544, 666
BbvI	GCAGC	1 cut(s)	47
BccI	CCATC	2 cut(s)	362, 983
BceAI	ACGGC	4 cut(s)	35, 82, 612, 776
BciT130I	CCWGG	1 cut(s)	846
BciVI	GTATCC	2 cut(s)	204, 402
BcoDI	GTCTC	2 cut(s)	555, 881
BfmI	CTRYAG	1 cut(s)	737
BfuAI	ACCTGC	1 cut(s)	173
BfuI	GTATCC	2 cut(s)	204, 402
BisI	GCNGC	3 cut(s)	12, 15, 36
BlsI	GCNGC	3 cut(s)	13, 16, 37
Bme1390I	CCNGG	1 cut(s)	846
Bme18I	GGWCC	1 cut(s)	400
BmgT120I	GGNCC	3 cut(s)	400, 778, 992
BmiI	GGNNCC	3 cut(s)	402, 958, 982
BmrFI	CCNGG	1 cut(s)	846
BmrI	ACTGGG	1 cut(s)	923
BmsI	GCATC	1 cut(s)	881
BmuI	ACTGGG	1 cut(s)	923
BpiI	GAAGAC	3 cut(s)	414, 720, 1060
BplI	GAGNNNNNCTC	2 cut(s)	332, 364
BpuEI	CTTGAG	1 cut(s)	1009
BsaAI	YACGTR	3 cut(s)	587, 661, 1043
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	645
BsaWI	WCCGGW	1 cut(s)	865
BsaXI	ACNNNNNCTCC	2 cut(s)	1027, 1057
Bsc4I	CCNNNNNNNGG	3 cut(s)	966, 990, 1026
Bse118I	RCCGGY	1 cut(s)	865
Bse1I	ACTGG	3 cut(s)	525, 620, 929
Bse3DI	GCAATG	2 cut(s)	457, 526
BseBI	CCWGG	1 cut(s)	846
BseDI	CCNNGG	1 cut(s)	645
BseGI	GGATG	2 cut(s)	875, 881
BseLI	CCNNNNNNNGG	3 cut(s)	966, 990, 1026
BseMI	GCAATG	2 cut(s)	457, 526
BseMII	CTCAG	5 cut(s)	203, 735, 951, 975, 999
BseNI	ACTGG	3 cut(s)	525, 620, 929
BseRI	GAGGAG	2 cut(s)	90, 1027
BseSI	GKGCMC	1 cut(s)	544
BseXI	GCAGC	1 cut(s)	47
BshFI	GGCC	4 cut(s)	5, 50, 779, 994
BshTI	ACCGGT	1 cut(s)	865
BsiHKAI	GWGCWC	2 cut(s)	544, 666
BsiSI	CCGG	1 cut(s)	866
BslFI	GGGAC	2 cut(s)	293, 386
BslI	CCNNNNNNNGG	3 cut(s)	966, 990, 1026
BsmAI	GTCTC	2 cut(s)	555, 881
BsmFI	GGGAC	2 cut(s)	293, 386
BsmI	GAATGC	3 cut(s)	760, 946, 970
BsnI	GGCC	4 cut(s)	5, 50, 779, 994
Bsp1286I	GDGCHC	3 cut(s)	544, 666, 927
BspACI	CCGC	5 cut(s)	12, 15, 132, 206, 1033
BspANI	GGCC	4 cut(s)	5, 50, 779, 994
BspCNI	CTCAG	5 cut(s)	202, 736, 950, 974, 998
BspLI	GGNNCC	3 cut(s)	402, 958, 982
BspMAI	CTGCAG	1 cut(s)	741
BspMI	ACCTGC	1 cut(s)	173
BsrBI	CCGCTC	1 cut(s)	1033
BsrDI	GCAATG	2 cut(s)	457, 526
BsrFI	RCCGGY	1 cut(s)	865
BsrI	ACTGG	3 cut(s)	525, 620, 929
BssAI	RCCGGY	1 cut(s)	865
BssECI	CCNNGG	1 cut(s)	645
BssNI	GRCGYC	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	846
Bst4CI	ACNGT	5 cut(s)	470, 617, 725, 806, 1068
Bst6I	CTCTTC	1 cut(s)	594
BstACI	GRCGYC	1 cut(s)	9
BstBAI	YACGTR	3 cut(s)	587, 661, 1043
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	5 cut(s)	189, 744, 937, 961, 985
BstENI	CCTNNNNNAGG	1 cut(s)	964
BstF5I	GGATG	2 cut(s)	875, 881
BstMAI	GTCTC	2 cut(s)	555, 881
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 56, 140
BstNI	CCWGG	1 cut(s)	846
BstNSI	RCATGY	2 cut(s)	291, 548
BstSCI	CCNGG	1 cut(s)	844
BstSFI	CTRYAG	1 cut(s)	737
BstSLI	GKGCMC	1 cut(s)	544
BstSNI	TACGTA	1 cut(s)	1043
BstV1I	GCAGC	1 cut(s)	47
BstV2I	GAAGAC	3 cut(s)	414, 720, 1060
BsuI	GTATCC	2 cut(s)	204, 402
BsuRI	GGCC	4 cut(s)	5, 50, 779, 994
BtsCI	GGATG	2 cut(s)	875, 881
BtsI	GCAGTG	2 cut(s)	66, 342
BtsIMutI	CAGTG	6 cut(s)	66, 342, 475, 532, 811, 1073
BveI	ACCTGC	1 cut(s)	173
Cac8I	GCNNGC	1 cut(s)	289
Cfr10I	RCCGGY	1 cut(s)	865
Cfr13I	GGNCC	3 cut(s)	400, 778, 992
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	4 cut(s)	53, 64, 94, 1040
CspAI	ACCGGT	1 cut(s)	865
CviAII	CATG	4 cut(s)	288, 545, 641, 1004
CviJI	RGCY	9 cut(s)	5, 50, 164, 346, 593, 779, 893, 925, 994
CviKI_1	RGCY	9 cut(s)	5, 50, 164, 346, 593, 779, 893, 925, 994
CviQI	GTAC	4 cut(s)	53, 64, 94, 1040
DdeI	CTNAG	5 cut(s)	189, 744, 937, 961, 985
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	594
EarI	CTCTTC	1 cut(s)	594
Eco105I	TACGTA	1 cut(s)	1043
Eco24I	GRGCYC	1 cut(s)	927
Eco47I	GGWCC	1 cut(s)	400
Eco57I	CTGAAG	1 cut(s)	927
Eco72I	CACGTG	2 cut(s)	587, 661
EcoNI	CCTNNNNNAGG	1 cut(s)	964
EcoO109I	RGGNCCY	1 cut(s)	778
EcoRI	GAATTC	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	844
EcoT22I	ATGCAT	1 cut(s)	948
EcoT38I	GRGCYC	1 cut(s)	927
FaeI	CATG	4 cut(s)	291, 548, 644, 1007
FaqI	GGGAC	2 cut(s)	293, 386
FatI	CATG	4 cut(s)	287, 544, 640, 1003
Fnu4HI	GCNGC	3 cut(s)	12, 15, 36
FokI	GGATG	2 cut(s)	862, 868
FriOI	GRGCYC	1 cut(s)	927
Fsp4HI	GCNGC	3 cut(s)	12, 15, 36
GluI	GCNGC	3 cut(s)	12, 15, 36
HaeIII	GGCC	4 cut(s)	5, 50, 779, 994
HapII	CCGG	1 cut(s)	866
HgaI	GACGC	1 cut(s)	17
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	4 cut(s)	291, 548, 644, 1007
HinfI	GANTC	8 cut(s)	89, 227, 358, 499, 530, 697, 746, 899
HpaII	CCGG	1 cut(s)	866
HphI	GGTGA	3 cut(s)	353, 737, 925
Hpy166II	GTNNAC	2 cut(s)	64, 542
Hpy188I	TCNGA	9 cut(s)	198, 249, 702, 745, 751, 886, 940, 964, 988
Hpy188III	TCNNGA	2 cut(s)	86, 239
Hpy8I	GTNNAC	2 cut(s)	64, 542
Hpy99I	CGWCG	2 cut(s)	11, 74
HpyCH4III	ACNGT	5 cut(s)	470, 617, 725, 806, 1068
HpyCH4IV	ACGT	3 cut(s)	586, 660, 1042
HpyCH4V	TGCA	6 cut(s)	477, 542, 739, 758, 872, 946
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 56, 140
HpyF3I	CTNAG	5 cut(s)	189, 744, 937, 961, 985
HpySE526I	ACGT	3 cut(s)	586, 660, 1042
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	4 cut(s)	291, 548, 644, 1007
LmnI	GCTCC	2 cut(s)	590, 1030
Lsp1109I	GCAGC	1 cut(s)	47
LweI	GCATC	1 cut(s)	881
MaeII	ACGT	3 cut(s)	586, 660, 1042
MaeIII	GTNAC	3 cut(s)	789, 852, 931
MbiI	CCGCTC	1 cut(s)	1033
MboII	GAAGA	8 cut(s)	35, 38, 419, 521, 611, 725, 920, 1065
MhlI	GDGCHC	3 cut(s)	544, 666, 927
MluCI	AATT	3 cut(s)	268, 493, 813
MlyI	GAGTC	2 cut(s)	706, 755
Mph1103I	ATGCAT	1 cut(s)	948
MseI	TTAA	2 cut(s)	308, 812
MslI	CAYNNNNRTG	3 cut(s)	366, 951, 975
MspI	CCGG	1 cut(s)	866
MspR9I	CCNGG	1 cut(s)	846
Mva1269I	GAATGC	3 cut(s)	760, 946, 970
MvaI	CCWGG	1 cut(s)	846
MwoI	GCNNNNNNNGC	3 cut(s)	11, 56, 140
NlaIII	CATG	4 cut(s)	291, 548, 644, 1007
NlaIV	GGNNCC	3 cut(s)	402, 958, 982
NmeAIII	GCCGAG	1 cut(s)	670
NmuCI	GTSAC	2 cut(s)	789, 931
NsiI	ATGCAT	1 cut(s)	948
NspI	RCATGY	2 cut(s)	291, 548
PaeI	GCATGC	1 cut(s)	291
PciI	ACATGT	1 cut(s)	544
PctI	GAATGC	3 cut(s)	760, 946, 970
PfeI	GAWTC	6 cut(s)	89, 227, 358, 499, 530, 899
PinAI	ACCGGT	1 cut(s)	865
PkrI	GCNGC	3 cut(s)	13, 16, 37
PleI	GAGTC	2 cut(s)	705, 754
PmaCI	CACGTG	2 cut(s)	587, 661
PmlI	CACGTG	2 cut(s)	587, 661
PpsI	GAGTC	2 cut(s)	705, 754
Ppu21I	YACGTR	3 cut(s)	587, 661, 1043
PscI	ACATGT	1 cut(s)	544
Psp6I	CCWGG	1 cut(s)	844
PspCI	CACGTG	2 cut(s)	587, 661
PspGI	CCWGG	1 cut(s)	844
PspN4I	GGNNCC	3 cut(s)	402, 958, 982
PspPI	GGNCC	3 cut(s)	400, 778, 992
PstI	CTGCAG	1 cut(s)	741
RsaI	GTAC	4 cut(s)	54, 65, 95, 1041
RsaNI	GTAC	4 cut(s)	53, 64, 94, 1040
RseI	CAYNNNNRTG	3 cut(s)	366, 951, 975
SaqAI	TTAA	2 cut(s)	308, 812
SatI	GCNGC	3 cut(s)	12, 15, 36
Sau96I	GGNCC	3 cut(s)	400, 778, 992
SchI	GAGTC	2 cut(s)	706, 755
ScrFI	CCNGG	1 cut(s)	846
SduI	GDGCHC	3 cut(s)	544, 666, 927
SfaNI	GCATC	1 cut(s)	881
SfcI	CTRYAG	1 cut(s)	737
SinI	GGWCC	1 cut(s)	400
SmiMI	CAYNNNNRTG	3 cut(s)	366, 951, 975
SmlI	CTYRAG	1 cut(s)	1024
SmoI	CTYRAG	1 cut(s)	1024
SnaBI	TACGTA	1 cut(s)	1043
SphI	GCATGC	1 cut(s)	291
Sse9I	AATT	3 cut(s)	268, 493, 813
SsiI	CCGC	5 cut(s)	12, 15, 132, 206, 1033
SspI	AATATT	1 cut(s)	832
StyD4I	CCNGG	1 cut(s)	844
TaaI	ACNGT	5 cut(s)	470, 617, 725, 806, 1068
TaiI	ACGT	3 cut(s)	589, 663, 1045
TaqI	TCGA	3 cut(s)	87, 178, 272
TasI	AATT	3 cut(s)	268, 493, 813
TauI	GCSGC	2 cut(s)	14, 17
TfiI	GAWTC	6 cut(s)	89, 227, 358, 499, 530, 899
Tru1I	TTAA	2 cut(s)	308, 812
Tru9I	TTAA	2 cut(s)	308, 812
TscAI	CASTG	6 cut(s)	66, 342, 475, 532, 811, 1073
TseFI	GTSAC	2 cut(s)	789, 931
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	2 cut(s)	789, 931
TspDTI	ATGAA	6 cut(s)	216, 371, 452, 522, 629, 726
TspRI	CASTG	6 cut(s)	66, 342, 475, 532, 811, 1073
VneI	GTGCAC	1 cut(s)	540
VpaK11BI	GGWCC	1 cut(s)	400
XagI	CCTNNNNNAGG	1 cut(s)	964
XapI	RAATTY	1 cut(s)	268
XceI	RCATGY	2 cut(s)	291, 548
Zsp2I	ATGCAT	1 cut(s)	948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.