Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009599

Physical Location & Seq

Genomic Coordinates Forward (+)

15342864 .. 15343379

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g17440.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGCTTGTGGTAATTTGTGAGGAAGCAGTGGAGAAGCTCTCTGTTATGAATCGCCCTGATGGAGACTGTCCATTGTGTTTGTATCCTTTGGTCCCAGAAGATGAGCAGAAAAATGCTTTGCCATTTATGAAGTTGATGTCTTGTTTCCATTGCTTCTCTAAATATATATATATATATATATATATATATATATATATTGGTGTTAGATTACATTTAAGGGTTTTGGTTTTAAATTTTGTTCTCCCTTTTTTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0031323 GO:0031326 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0050794 GO:0051059 GO:0051090 GO:0051091 GO:0051092 GO:0051171 GO:0051252 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RWD

Protein Analysis

86

Amino Acids

10.06

Weight (kDa)

6.03

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60300 AT3G60300
fragaria_vesca	FvH4_7g10220 FvH4_7g10220 FvH4_7g10220 FvH4_7g10220
malus_domestica	MD02G1213400.v1.1
prunus_persica	Prupe.2G132200_v2.0.a1 Prupe.2G132200_v2.0.a1
pyrus_communis	pycom02g17440
rosa_chinensis	RchiOBHm_Chr1g0347961
rosa_laevigata	RLG00000028700
rosa_multiflora	Rmu_co7985412.1_g000001 Rmu_sc0007060.1_g000001 Rmu_sc0022322.1_g000001
rosa_roxburghii	Rroxscaffold_4G00307340
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG209100 Rh1BG173800 Rh1CG193300 Rh1DG203800
rosa_wichuraiana	Rw1G017390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	232
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
Alw26I	GTCTC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	232
AspS9I	GGNCC	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	91
BccI	CCATC	1 cut(s)	53
BciVI	GTATCC	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	57
BfuI	GTATCC	1 cut(s)	93
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	93
BplI	GAGNNNNNCTC	2 cut(s)	23, 55
Bse3DI	GCAATG	1 cut(s)	148
BseMI	GCAATG	1 cut(s)	148
BslFI	GGGAC	1 cut(s)	77
BsmAI	GTCTC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	77
BspLI	GGNNCC	1 cut(s)	93
BsrDI	GCAATG	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	68
BstMAI	GTCTC	1 cut(s)	57
BsuI	GTATCC	1 cut(s)	93
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	33
Cfr13I	GGNCC	1 cut(s)	91
CviJI	RGCY	1 cut(s)	37
CviKI_1	RGCY	1 cut(s)	37
DraI	TTTAAA	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	91
FaqI	GGGAC	1 cut(s)	77
HinfI	GANTC	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	68
LpnPI	CCDG	2 cut(s)	69, 108
MboII	GAAGA	1 cut(s)	110
MluCI	AATT	2 cut(s)	12, 232
MnlI	CCTC	1 cut(s)	13
MseI	TTAA	3 cut(s)	215, 230, 256
NlaIV	GGNNCC	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	93
PspPI	GGNCC	1 cut(s)	91
SaqAI	TTAA	3 cut(s)	215, 230, 256
Sau96I	GGNCC	1 cut(s)	91
SetI	ASST	1 cut(s)	39
SgeI	CNNG	4 cut(s)	17, 68, 107, 153
SinI	GGWCC	1 cut(s)	91
Sse9I	AATT	2 cut(s)	12, 232
TaaI	ACNGT	1 cut(s)	68
TasI	AATT	2 cut(s)	12, 232
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	3 cut(s)	215, 230, 256
Tru9I	TTAA	3 cut(s)	215, 230, 256
TscAI	CASTG	1 cut(s)	33
TspDTI	ATGAA	2 cut(s)	62, 143
TspRI	CASTG	1 cut(s)	33
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.