Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009599

Physical Location & Seq

Genomic Coordinates Forward (+)

28564397 .. 28567819

Gene Structure 3423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00307340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCCGCCCACGAAGAAGACGTAGCGGCAGAACTCGAAGCCGTGCAAGCAGTCTACGGCGACGATTGCGTCCTTCTCGATTCCTATCCTCCCCATCTCCACCTCCACATCAAACCCCGCACCGCCGACGTCGCTTCCCAACAGTTTGTGGAAGCTGTTATTGAAATTCGGGCGGGTTCTCAGTATCCGGAGGAACCGCCGCATATTTATGTTATAGATTCAAAGGGCCTGGATGAGGAAAGGCAAAAGCATCTTACAAATTATATAAGAGAAAAAGCACGCGAGCTATCGTCTTGTTTGATGCTTGTGGCAGTTTGTGAGGAAGCAGTGGAGAAGCTCTCAGCTATGAATCACCCTGATGGCGATTGTCCTCTGTGTTTGTGTCCTTTGGTCCCAGAGGAGGAGCAGAGTAAAGTCTTGCCATTTATGAAGTTGATGTCTTGTTTCCATTGCTTTCACAGTGAGTGCATTATTAGGTGGTGGAGTTGCATCCAAACAGAAGCAAAAATCAACTCCTCAACAAGTGCGCATCTGCGTTCTATTAGAGAGACCAGAGATCACAAAGATACACCAGGAGCTGTGGAAGAGCGTATGGGAAACTGTCCAGTTTGCCGCAAAGGCTTTCATGCGCAGGACTTAGAACATGTGCTTCATTTGGTTGGCAATGATTTCTCTCAATTTAGCTTGGATGAAAATGAAGACGATGACAGTGAGAAATTCCTGCAGTCTGATACAGAGAAGGCCCGAAGAGAGAACTTTGAGGCCATATTTAAGTTGCAGCAAGAAAACGGTGGTTTAATTGAACCTAAGAAAAATGTTGTTATCGTACCTGGTATGTTTCTTACACCACCAGTTGCACCTTCTAACTCTGTGGCAGCCAAAGAACCTCCTGAAGAGCAACAGAGAGAACCACCAGTCACGTCAGGCATGCATTCTGGTGGTTCCTCAGGGAGGCATAATACCAATGAGCAAAGGACTTCCAGCTCGAGGAAGCAAAGAGAGCAAAGAGTACGTAATCCTAGACGACCTGCCAAACAGTGGATTAGAAAAGAAAGTGACAAGGCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0031323 GO:0031326 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0050794 GO:0051059 GO:0051090 GO:0051091 GO:0051092 GO:0051171 GO:0051252 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RWD

Protein Analysis

356

Amino Acids

40.3

Weight (kDa)

5.5

Isoelectric Point (pI)

66.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RWD	PF05773	6 - 112	6.1e-16	RWD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60300 AT3G60300
fragaria_vesca	FvH4_7g10220 FvH4_7g10220 FvH4_7g10220 FvH4_7g10220
malus_domestica	MD02G1213400.v1.1
prunus_persica	Prupe.2G132200_v2.0.a1 Prupe.2G132200_v2.0.a1
pyrus_communis	pycom02g17440
rosa_chinensis	RchiOBHm_Chr1g0347961
rosa_laevigata	RLG00000028700
rosa_multiflora	Rmu_co7985412.1_g000001 Rmu_sc0007060.1_g000001 Rmu_sc0022322.1_g000001
rosa_roxburghii	Rroxscaffold_4G00307340
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG209100 Rh1BG173800 Rh1CG193300 Rh1DG203800
rosa_wichuraiana	Rw1G017390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
AatII	GACGTC	1 cut(s)	132
Acc16I	TGCGCA	2 cut(s)	528, 630
Acc36I	ACCTGC	1 cut(s)	1036
AccB7I	CCANNNNNTGG	1 cut(s)	1038
AccI	GTMKAC	1 cut(s)	54
AccII	CGCG	1 cut(s)	282
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	8 cut(s)	6, 26, 118, 123, 173, 197, 200, 613
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	165, 716
AcuI	CTGAAG	1 cut(s)	912
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	2 cut(s)	828, 1011
AfiI	CCNNNNNNNGG	5 cut(s)	235, 400, 951, 987, 1038
AflIII	ACRYGT	1 cut(s)	643
AgsI	TTSAA	3 cut(s)	164, 222, 803
AjiI	CACGTC	1 cut(s)	921
AjnI	CCWGG	3 cut(s)	228, 571, 829
AluBI	AGCT	7 cut(s)	155, 286, 337, 344, 578, 684, 984
AluI	AGCT	7 cut(s)	155, 286, 337, 344, 578, 684, 984
Alw26I	GTCTC	1 cut(s)	542
AlwNI	CAGNNNCTG	1 cut(s)	578
Ama87I	CYCGRG	1 cut(s)	985
Aor13HI	TCCGGA	1 cut(s)	187
AoxI	GGCC	4 cut(s)	3, 226, 741, 762
ApeKI	GCWGC	2 cut(s)	778, 875
ApoI	RAATTY	2 cut(s)	165, 716
AspLEI	GCGC	2 cut(s)	529, 631
AspS9I	GGNCC	3 cut(s)	226, 391, 742
AsuHPI	GGTGA	1 cut(s)	344
AvaI	CYCGRG	1 cut(s)	985
AvaII	GGWCC	1 cut(s)	391
AxyI	CCTNAGG	1 cut(s)	946
BbsI	GAAGAC	2 cut(s)	24, 705
BbvI	GCAGC	2 cut(s)	790, 887
BccI	CCATC	2 cut(s)	102, 353
BceAI	ACGGC	2 cut(s)	26, 73
BciT130I	CCWGG	3 cut(s)	230, 573, 831
BciVI	GTATCC	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	542
BfaI	CTAG	1 cut(s)	1020
BfmI	CTRYAG	1 cut(s)	722
BfuAI	ACCTGC	1 cut(s)	1036
BfuI	GTATCC	1 cut(s)	195
BglI	GCCNNNNNGGC	1 cut(s)	618
BisI	GCNGC	6 cut(s)	6, 27, 200, 613, 779, 876
BlsI	GCNGC	6 cut(s)	7, 28, 201, 614, 780, 877
Bme1390I	CCNGG	3 cut(s)	230, 573, 831
Bme18I	GGWCC	1 cut(s)	391
BmeT110I	CYCGRG	1 cut(s)	985
BmgBI	CACGTC	1 cut(s)	921
BmgT120I	GGNCC	3 cut(s)	226, 391, 742
BmiI	GGNNCC	3 cut(s)	195, 393, 943
BmrFI	CCNGG	3 cut(s)	230, 573, 831
BmsI	GCATC	4 cut(s)	259, 291, 498, 538
BpiI	GAAGAC	2 cut(s)	24, 705
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
BsaAI	YACGTR	1 cut(s)	1013
BsaBI	GATNNNNATC	1 cut(s)	84
BsaHI	GRCGYC	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	542
BsaWI	WCCGGW	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	5 cut(s)	235, 400, 951, 987, 1038
Bse1I	ACTGG	3 cut(s)	605, 851, 914
Bse21I	CCTNAGG	1 cut(s)	946
Bse3DI	GCAATG	2 cut(s)	448, 670
Bse8I	GATNNNNATC	1 cut(s)	84
BseAI	TCCGGA	1 cut(s)	187
BseBI	CCWGG	3 cut(s)	230, 573, 831
BseGI	GGATG	3 cut(s)	238, 489, 694
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	5 cut(s)	235, 400, 951, 987, 1038
BseMI	GCAATG	2 cut(s)	448, 670
BseMII	CTCAG	3 cut(s)	194, 354, 960
BseNI	ACTGG	3 cut(s)	605, 851, 914
BseRI	GAGGAG	3 cut(s)	413, 416, 505
BseXI	GCAGC	2 cut(s)	790, 887
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	4 cut(s)	5, 228, 743, 764
BsiHKCI	CYCGRG	1 cut(s)	985
BsiSI	CCGG	1 cut(s)	188
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	5 cut(s)	235, 400, 951, 987, 1038
BsmAI	GTCTC	1 cut(s)	542
BsmFI	GGGAC	1 cut(s)	377
BsmI	GAATGC	1 cut(s)	931
BsnI	GGCC	4 cut(s)	5, 228, 743, 764
Bso31I	GGTCTC	1 cut(s)	542
BsoBI	CYCGRG	1 cut(s)	985
Bsp13I	TCCGGA	1 cut(s)	187
Bsp143I	GATC	1 cut(s)	556
BspACI	CCGC	8 cut(s)	6, 26, 118, 123, 173, 197, 200, 613
BspANI	GGCC	4 cut(s)	5, 228, 743, 764
BspCNI	CTCAG	3 cut(s)	193, 353, 959
BspEI	TCCGGA	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	3 cut(s)	195, 393, 943
BspMAI	CTGCAG	1 cut(s)	726
BspMI	ACCTGC	1 cut(s)	1036
BspQI	GCTCTTC	2 cut(s)	579, 888
BspTNI	GGTCTC	1 cut(s)	542
BsrDI	GCAATG	2 cut(s)	448, 670
BsrI	ACTGG	3 cut(s)	605, 851, 914
BssMI	GATC	1 cut(s)	556
BssNI	GRCGYC	1 cut(s)	129
Bst2UI	CCWGG	3 cut(s)	230, 573, 831
Bst4CI	ACNGT	6 cut(s)	144, 461, 602, 710, 791, 1038
Bst6I	CTCTTC	3 cut(s)	579, 742, 888
BstACI	GRCGYC	1 cut(s)	129
BstBAI	YACGTR	1 cut(s)	1013
BstC8I	GCNNGC	4 cut(s)	48, 280, 284, 929
BstDEI	CTNAG	5 cut(s)	180, 340, 637, 807, 946
BstENI	CCTNNNNNAGG	2 cut(s)	233, 949
BstF5I	GGATG	3 cut(s)	238, 489, 694
BstFNI	CGCG	1 cut(s)	282
BstHHI	GCGC	2 cut(s)	529, 631
BstKTI	GATC	1 cut(s)	559
BstMAI	GTCTC	1 cut(s)	542
BstMBI	GATC	1 cut(s)	556
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 66, 131, 618, 1000
BstNI	CCWGG	3 cut(s)	230, 573, 831
BstNSI	RCATGY	2 cut(s)	647, 931
BstSCI	CCNGG	3 cut(s)	228, 571, 829
BstSFI	CTRYAG	1 cut(s)	722
BstSNI	TACGTA	1 cut(s)	1013
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	790, 887
BstV2I	GAAGAC	2 cut(s)	24, 705
Bsu36I	CCTNAGG	1 cut(s)	946
BsuI	GTATCC	1 cut(s)	195
BsuRI	GGCC	4 cut(s)	5, 228, 743, 764
BtrI	CACGTC	1 cut(s)	921
BtsCI	GGATG	3 cut(s)	238, 489, 694
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	4 cut(s)	333, 466, 715, 1043
BveI	ACCTGC	1 cut(s)	1036
Cac8I	GCNNGC	4 cut(s)	48, 280, 284, 929
CaiI	CAGNNNCTG	1 cut(s)	578
CfoI	GCGC	2 cut(s)	529, 631
Cfr13I	GGNCC	3 cut(s)	226, 391, 742
CseI	GACGC	1 cut(s)	58
CsiI	ACCWGGT	1 cut(s)	829
Csp6I	GTAC	2 cut(s)	827, 1010
CviAII	CATG	3 cut(s)	626, 644, 928
CviQI	GTAC	2 cut(s)	827, 1010
DdeI	CTNAG	5 cut(s)	180, 340, 637, 807, 946
DpnI	GATC	1 cut(s)	558
DpnII	GATC	1 cut(s)	556
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	579, 742, 888
EarI	CTCTTC	3 cut(s)	579, 742, 888
Eco105I	TACGTA	1 cut(s)	1013
Eco31I	GGTCTC	1 cut(s)	542
Eco47I	GGWCC	1 cut(s)	391
Eco57I	CTGAAG	1 cut(s)	912
Eco81I	CCTNAGG	1 cut(s)	946
Eco88I	CYCGRG	1 cut(s)	985
EcoNI	CCTNNNNNAGG	2 cut(s)	233, 949
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRII	CCWGG	3 cut(s)	228, 571, 829
EcoT22I	ATGCAT	1 cut(s)	933
FaeI	CATG	3 cut(s)	629, 647, 931
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	3 cut(s)	625, 643, 927
FauI	CCCGC	2 cut(s)	125, 166
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	6 cut(s)	6, 27, 200, 613, 779, 876
FokI	GGATG	3 cut(s)	245, 476, 701
Fsp4HI	GCNGC	6 cut(s)	6, 27, 200, 613, 779, 876
FspAI	RTGCGCAY	1 cut(s)	528
FspBI	CTAG	1 cut(s)	1020
FspI	TGCGCA	2 cut(s)	528, 630
GlaI	GCGC	2 cut(s)	528, 630
GluI	GCNGC	6 cut(s)	6, 27, 200, 613, 779, 876
HaeIII	GGCC	4 cut(s)	5, 228, 743, 764
HapII	CCGG	1 cut(s)	188
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	2 cut(s)	529, 631
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	3 cut(s)	629, 647, 931
Hin6I	GCGC	2 cut(s)	527, 629
HinP1I	GCGC	2 cut(s)	527, 629
HinfI	GANTC	3 cut(s)	80, 218, 349
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	1 cut(s)	730
Hpy188III	TCNNGA	3 cut(s)	77, 188, 890
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	3 cut(s)	65, 131, 134
HpyAV	CCTTC	3 cut(s)	83, 733, 870
HpyCH4III	ACNGT	6 cut(s)	144, 461, 602, 710, 791, 1038
HpyCH4IV	ACGT	4 cut(s)	21, 129, 920, 1012
HpyCH4V	TGCA	7 cut(s)	46, 468, 489, 724, 778, 857, 931
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 66, 131, 618, 1000
HpyF3I	CTNAG	5 cut(s)	180, 340, 637, 807, 946
HpySE526I	ACGT	4 cut(s)	21, 129, 920, 1012
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	629, 647, 931
HspAI	GCGC	2 cut(s)	527, 629
Kpn2I	TCCGGA	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	556
LguI	GCTCTTC	2 cut(s)	579, 888
LmnI	GCTCC	2 cut(s)	403, 575
Lsp1109I	GCAGC	2 cut(s)	790, 887
LweI	GCATC	4 cut(s)	259, 291, 498, 538
MabI	ACCWGGT	1 cut(s)	829
MaeI	CTAG	1 cut(s)	1020
MaeII	ACGT	4 cut(s)	21, 129, 920, 1012
MaeIII	GTNAC	2 cut(s)	916, 1055
MalI	GATC	1 cut(s)	558
MboI	GATC	1 cut(s)	556
MboII	GAAGA	6 cut(s)	26, 29, 596, 710, 759, 905
MluCI	AATT	5 cut(s)	165, 259, 677, 716, 798
Mph1103I	ATGCAT	1 cut(s)	933
MroI	TCCGGA	1 cut(s)	187
MseI	TTAA	2 cut(s)	771, 797
MslI	CAYNNNNRTG	3 cut(s)	207, 357, 936
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	3 cut(s)	230, 573, 831
Mva1269I	GAATGC	1 cut(s)	931
MvaI	CCWGG	3 cut(s)	230, 573, 831
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	5 cut(s)	47, 66, 131, 618, 1000
NdeII	GATC	1 cut(s)	556
NlaIII	CATG	3 cut(s)	629, 647, 931
NlaIV	GGNNCC	3 cut(s)	195, 393, 943
NmuCI	GTSAC	2 cut(s)	916, 1055
NsbI	TGCGCA	2 cut(s)	528, 630
NsiI	ATGCAT	1 cut(s)	933
NspI	RCATGY	2 cut(s)	647, 931
PaeI	GCATGC	1 cut(s)	931
PaeR7I	CTCGAG	1 cut(s)	985
PciI	ACATGT	1 cut(s)	643
PciSI	GCTCTTC	2 cut(s)	579, 888
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PctI	GAATGC	1 cut(s)	931
PfeI	GAWTC	3 cut(s)	80, 218, 349
PflMI	CCANNNNNTGG	1 cut(s)	1038
PkrI	GCNGC	6 cut(s)	7, 28, 201, 614, 780, 877
Ppu21I	YACGTR	1 cut(s)	1013
PscI	ACATGT	1 cut(s)	643
Psp6I	CCWGG	3 cut(s)	228, 571, 829
PspGI	CCWGG	3 cut(s)	228, 571, 829
PspN4I	GGNNCC	3 cut(s)	195, 393, 943
PspPI	GGNCC	3 cut(s)	226, 391, 742
PspXI	VCTCGAGB	1 cut(s)	985
PstI	CTGCAG	1 cut(s)	726
PstNI	CAGNNNCTG	1 cut(s)	578
RsaI	GTAC	2 cut(s)	828, 1011
RsaNI	GTAC	2 cut(s)	827, 1010
RseI	CAYNNNNRTG	3 cut(s)	207, 357, 936
SapI	GCTCTTC	2 cut(s)	579, 888
SaqAI	TTAA	2 cut(s)	771, 797
SatI	GCNGC	6 cut(s)	6, 27, 200, 613, 779, 876
Sau3AI	GATC	1 cut(s)	556
Sau96I	GGNCC	3 cut(s)	226, 391, 742
ScrFI	CCNGG	3 cut(s)	230, 573, 831
SexAI	ACCWGGT	1 cut(s)	829
SfaNI	GCATC	4 cut(s)	259, 291, 498, 538
SfcI	CTRYAG	1 cut(s)	722
Sfr274I	CTCGAG	1 cut(s)	985
SinI	GGWCC	1 cut(s)	391
SlaI	CTCGAG	1 cut(s)	985
SmiMI	CAYNNNNRTG	3 cut(s)	207, 357, 936
SmlI	CTYRAG	1 cut(s)	985
SmoI	CTYRAG	1 cut(s)	985
SnaBI	TACGTA	1 cut(s)	1013
SphI	GCATGC	1 cut(s)	931
Sse9I	AATT	5 cut(s)	165, 259, 677, 716, 798
SsiI	CCGC	8 cut(s)	6, 26, 118, 123, 173, 197, 200, 613
SspMI	CTAG	1 cut(s)	1020
StyD4I	CCNGG	3 cut(s)	228, 571, 829
TaaI	ACNGT	6 cut(s)	144, 461, 602, 710, 791, 1038
TaiI	ACGT	4 cut(s)	24, 132, 923, 1015
TaqI	TCGA	3 cut(s)	36, 78, 986
TasI	AATT	5 cut(s)	165, 259, 677, 716, 798
TauI	GCSGC	4 cut(s)	8, 29, 202, 615
TfiI	GAWTC	3 cut(s)	80, 218, 349
Tru1I	TTAA	2 cut(s)	771, 797
Tru9I	TTAA	2 cut(s)	771, 797
TscAI	CASTG	4 cut(s)	333, 466, 715, 1043
TseFI	GTSAC	2 cut(s)	916, 1055
TseI	GCWGC	2 cut(s)	778, 875
Tsp45I	GTSAC	2 cut(s)	916, 1055
TspDTI	ATGAA	6 cut(s)	362, 443, 614, 641, 705, 711
TspRI	CASTG	4 cut(s)	333, 466, 715, 1043
Van91I	CCANNNNNTGG	1 cut(s)	1038
VpaK11BI	GGWCC	1 cut(s)	391
XagI	CCTNNNNNAGG	2 cut(s)	233, 949
XapI	RAATTY	2 cut(s)	165, 716
XceI	RCATGY	2 cut(s)	647, 931
XhoI	CTCGAG	1 cut(s)	985
XmiI	GTMKAC	1 cut(s)	54
XspI	CTAG	1 cut(s)	1020
ZraI	GACGTC	1 cut(s)	130
Zsp2I	ATGCAT	1 cut(s)	933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.