Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022322.1

Orthogroup ID

OG0009599

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1900

Gene Structure 1900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022322.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 503 bp

agacaccaggagctgtggaagagagtatgggaaactgtccagtttgtcgcaaaggctttcatgtgcaggacttagaacatgtgcttcatttggttggcaatgatttctctcaatttagcttggatgagaatgaagacgatgacggtgagaaattcctgcagtctgatacagagaaggcccgaagagagaactttgaggccatatttaagttacagcaagaaaatggtggtttaattgaacctaagaaaaatgttgttatcgtacctggtatgtttcttacaccaccagttgcaccttctaactctgtggcagccaaagaacctcctgaagagcaacagagagaacccccagtcacgtcaggcatgcattctggtggttcctcagggaggcataataccaatgagcaaaggacttccagctcaaggaagcagagagagcaaagagtacgtaatccaagacgacctgccaaacagtggattagaaaagaaagtgacaaggcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0031323 GO:0031326 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0050794 GO:0051059 GO:0051090 GO:0051091 GO:0051092 GO:0051171 GO:0051252 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RWD

Protein Analysis

166

Amino Acids

18.64

Weight (kDa)

6.21

Isoelectric Point (pI)

65.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60300 AT3G60300
fragaria_vesca	FvH4_7g10220 FvH4_7g10220 FvH4_7g10220 FvH4_7g10220
malus_domestica	MD02G1213400.v1.1
prunus_persica	Prupe.2G132200_v2.0.a1 Prupe.2G132200_v2.0.a1
pyrus_communis	pycom02g17440
rosa_chinensis	RchiOBHm_Chr1g0347961
rosa_laevigata	RLG00000028700
rosa_multiflora	Rmu_co7985412.1_g000001 Rmu_sc0007060.1_g000001 Rmu_sc0022322.1_g000001
rosa_roxburghii	Rroxscaffold_4G00307340
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG209100 Rh1BG173800 Rh1CG193300 Rh1DG203800
rosa_wichuraiana	Rw1G017390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	471
AccB7I	CCANNNNNTGG	1 cut(s)	473
AcsI	RAATTY	1 cut(s)	151
AcuI	CTGAAG	1 cut(s)	347
AfaI	GTAC	2 cut(s)	263, 446
AfiI	CCNNNNNNNGG	3 cut(s)	386, 422, 473
AflIII	ACRYGT	1 cut(s)	78
AgsI	TTSAA	1 cut(s)	238
AjiI	CACGTC	1 cut(s)	356
AjnI	CCWGG	2 cut(s)	6, 264
AluBI	AGCT	3 cut(s)	13, 119, 419
AluI	AGCT	3 cut(s)	13, 119, 419
AlwNI	CAGNNNCTG	1 cut(s)	13
AoxI	GGCC	2 cut(s)	176, 197
ApeKI	GCWGC	1 cut(s)	310
ApoI	RAATTY	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	177
AsuHPI	GGTGA	1 cut(s)	157
AxyI	CCTNAGG	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	322
BciT130I	CCWGG	2 cut(s)	8, 266
BfmI	CTRYAG	1 cut(s)	157
BfuAI	ACCTGC	1 cut(s)	471
BisI	GCNGC	1 cut(s)	311
BlsI	GCNGC	1 cut(s)	312
Bme1390I	CCNGG	2 cut(s)	8, 266
BmgBI	CACGTC	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	177
BmiI	GGNNCC	1 cut(s)	378
BmrFI	CCNGG	2 cut(s)	8, 266
BmrI	ACTGGG	1 cut(s)	343
BmuI	ACTGGG	1 cut(s)	343
BpiI	GAAGAC	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	405
BsaAI	YACGTR	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	3 cut(s)	386, 422, 473
Bse1I	ACTGG	3 cut(s)	40, 286, 349
Bse21I	CCTNAGG	1 cut(s)	381
Bse3DI	GCAATG	1 cut(s)	105
BseBI	CCWGG	2 cut(s)	8, 266
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	3 cut(s)	386, 422, 473
BseMI	GCAATG	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	395
BseNI	ACTGG	3 cut(s)	40, 286, 349
BseXI	GCAGC	1 cut(s)	322
BsgI	GTGCAG	1 cut(s)	85
BshFI	GGCC	2 cut(s)	178, 199
BslI	CCNNNNNNNGG	3 cut(s)	386, 422, 473
BsmI	GAATGC	1 cut(s)	366
BsnI	GGCC	2 cut(s)	178, 199
BspANI	GGCC	2 cut(s)	178, 199
BspCNI	CTCAG	1 cut(s)	394
BspLI	GGNNCC	1 cut(s)	378
BspMAI	CTGCAG	1 cut(s)	161
BspMI	ACCTGC	1 cut(s)	471
BspQI	GCTCTTC	1 cut(s)	323
BsrDI	GCAATG	1 cut(s)	105
BsrI	ACTGG	3 cut(s)	40, 286, 349
Bst2UI	CCWGG	2 cut(s)	8, 266
Bst4CI	ACNGT	3 cut(s)	37, 145, 473
Bst6I	CTCTTC	3 cut(s)	14, 177, 323
BstBAI	YACGTR	1 cut(s)	448
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	3 cut(s)	72, 242, 381
BstENI	CCTNNNNNAGG	1 cut(s)	384
BstF5I	GGATG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	1 cut(s)	435
BstNI	CCWGG	2 cut(s)	8, 266
BstNSI	RCATGY	2 cut(s)	82, 366
BstSCI	CCNGG	2 cut(s)	6, 264
BstSFI	CTRYAG	1 cut(s)	157
BstSNI	TACGTA	1 cut(s)	448
BstV1I	GCAGC	1 cut(s)	322
BstV2I	GAAGAC	1 cut(s)	140
Bsu36I	CCTNAGG	1 cut(s)	381
BsuRI	GGCC	2 cut(s)	178, 199
BtrI	CACGTC	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	478
BveI	ACCTGC	1 cut(s)	471
Cac8I	GCNNGC	1 cut(s)	364
CaiI	CAGNNNCTG	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	177
CsiI	ACCWGGT	1 cut(s)	264
Csp6I	GTAC	2 cut(s)	262, 445
CviAII	CATG	3 cut(s)	61, 79, 363
CviJI	RGCY	7 cut(s)	13, 56, 119, 178, 199, 313, 419
CviKI_1	RGCY	7 cut(s)	13, 56, 119, 178, 199, 313, 419
CviQI	GTAC	2 cut(s)	262, 445
DdeI	CTNAG	3 cut(s)	72, 242, 381
Eam1104I	CTCTTC	3 cut(s)	14, 177, 323
EarI	CTCTTC	3 cut(s)	14, 177, 323
Eco105I	TACGTA	1 cut(s)	448
Eco57I	CTGAAG	1 cut(s)	347
Eco81I	CCTNAGG	1 cut(s)	381
EcoNI	CCTNNNNNAGG	1 cut(s)	384
EcoRII	CCWGG	2 cut(s)	6, 264
EcoT22I	ATGCAT	1 cut(s)	368
FaeI	CATG	3 cut(s)	64, 82, 366
FaiI	YATR	8 cut(s)	28, 62, 80, 202, 271, 364, 392, 501
FatI	CATG	3 cut(s)	60, 78, 362
Fnu4HI	GCNGC	1 cut(s)	311
FokI	GGATG	1 cut(s)	136
Fsp4HI	GCNGC	1 cut(s)	311
GluI	GCNGC	1 cut(s)	311
HaeIII	GGCC	2 cut(s)	178, 199
Hin1II	CATG	3 cut(s)	64, 82, 366
HphI	GGTGA	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	1 cut(s)	325
HpyAV	CCTTC	2 cut(s)	168, 305
HpyCH4III	ACNGT	3 cut(s)	37, 145, 473
HpyCH4IV	ACGT	2 cut(s)	355, 447
HpyCH4V	TGCA	4 cut(s)	66, 159, 292, 366
HpyF10VI	GCNNNNNNNGC	1 cut(s)	435
HpyF3I	CTNAG	3 cut(s)	72, 242, 381
HpySE526I	ACGT	2 cut(s)	355, 447
Hsp92II	CATG	3 cut(s)	64, 82, 366
LguI	GCTCTTC	1 cut(s)	323
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	1 cut(s)	322
MabI	ACCWGGT	1 cut(s)	264
MaeII	ACGT	2 cut(s)	355, 447
MaeIII	GTNAC	3 cut(s)	209, 351, 490
MboII	GAAGA	4 cut(s)	31, 145, 194, 340
MluCI	AATT	3 cut(s)	112, 151, 233
MnlI	CCTC	4 cut(s)	189, 332, 380, 390
Mph1103I	ATGCAT	1 cut(s)	368
MseI	TTAA	2 cut(s)	206, 232
MslI	CAYNNNNRTG	1 cut(s)	371
MspR9I	CCNGG	2 cut(s)	8, 266
Mva1269I	GAATGC	1 cut(s)	366
MvaI	CCWGG	2 cut(s)	8, 266
MwoI	GCNNNNNNNGC	1 cut(s)	435
NlaIII	CATG	3 cut(s)	64, 82, 366
NlaIV	GGNNCC	1 cut(s)	378
NmuCI	GTSAC	2 cut(s)	351, 490
NsiI	ATGCAT	1 cut(s)	368
NspI	RCATGY	2 cut(s)	82, 366
PaeI	GCATGC	1 cut(s)	366
PciI	ACATGT	1 cut(s)	78
PciSI	GCTCTTC	1 cut(s)	323
PctI	GAATGC	1 cut(s)	366
PflMI	CCANNNNNTGG	1 cut(s)	473
PkrI	GCNGC	1 cut(s)	312
Ppu21I	YACGTR	1 cut(s)	448
PscI	ACATGT	1 cut(s)	78
Psp6I	CCWGG	2 cut(s)	6, 264
PspGI	CCWGG	2 cut(s)	6, 264
PspN4I	GGNNCC	1 cut(s)	378
PspPI	GGNCC	1 cut(s)	177
PstI	CTGCAG	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	13
RsaI	GTAC	2 cut(s)	263, 446
RsaNI	GTAC	2 cut(s)	262, 445
RseI	CAYNNNNRTG	1 cut(s)	371
SapI	GCTCTTC	1 cut(s)	323
SaqAI	TTAA	2 cut(s)	206, 232
SatI	GCNGC	1 cut(s)	311
Sau96I	GGNCC	1 cut(s)	177
ScrFI	CCNGG	2 cut(s)	8, 266
SexAI	ACCWGGT	1 cut(s)	264
SfcI	CTRYAG	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	1 cut(s)	420
SmoI	CTYRAG	1 cut(s)	420
SnaBI	TACGTA	1 cut(s)	448
SphI	GCATGC	1 cut(s)	366
Sse9I	AATT	3 cut(s)	112, 151, 233
StyD4I	CCNGG	2 cut(s)	6, 264
TaaI	ACNGT	3 cut(s)	37, 145, 473
TaiI	ACGT	2 cut(s)	358, 450
TasI	AATT	3 cut(s)	112, 151, 233
Tru1I	TTAA	2 cut(s)	206, 232
Tru9I	TTAA	2 cut(s)	206, 232
TscAI	CASTG	1 cut(s)	478
TseFI	GTSAC	2 cut(s)	351, 490
TseI	GCWGC	1 cut(s)	310
Tsp45I	GTSAC	2 cut(s)	351, 490
TspDTI	ATGAA	3 cut(s)	49, 76, 146
TspRI	CASTG	1 cut(s)	478
Van91I	CCANNNNNTGG	1 cut(s)	473
XagI	CCTNNNNNAGG	1 cut(s)	384
XapI	RAATTY	1 cut(s)	151
XceI	RCATGY	2 cut(s)	82, 366
Zsp2I	ATGCAT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.