Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0016918

Physical Location & Seq

Genomic Coordinates Reverse (-)

11083926 .. 11084806

Gene Structure 881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g12210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGATGCAGCGATGATACAAAGCTGCCAGGGATCTTGGGATGTTAAAGTTGGTAAGAGTGGTAATGGACAACTTTATTTCAAAGAAGGTTGGCTAAAATTCGTGAACCATCATAGCCTGAGAGTTGGAGAGTTTCTTGTATTTGAACACAAAGGGAATATGGTATTTAATGTGGTATCTTATGGTTTAAGTGCTTGTGAGAAAGAGTATCATTTCCCTTCTGATTCGATGGTAAACGGTAGGATGACAACACCTCATGAAACACAAAAGGTTAAGCGTCCTCGCGATGACAATTTGGAAGGTGGAACTCATTTCTTCCGGACAATTATGAAGCCATCCCATCGTGATAAACGTAACCCTTATATGAATATCCCTCCTTCATTTGTTGAAGCGAATGGAATTGCTCACAAATCCAGCATGACTCTGATAGATCCTTCAAGACATCATTGGAAGGTGGACCTTAAACATTGGAAAGAAAAGAAACGGCAGCGCGTGACAATGGCGAGGGGGTGGACTGAGTTTTACAGAGCCAACAAGCTGAATGACAGAGATGTCTGCATATTTGAGCTCCATCAGAAAACAGCAGTCTCTAAGAATGTTGTTGTTAATGTCAAGATTTGTTGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

210

Amino Acids

24.3

Weight (kDa)

9.59

Isoelectric Point (pI)

30.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	12 - 59	1.2e-09	B3 DNA binding domain
B3	PF02362	106 - 193	1.4e-17	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016918)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12210 FvH4_7g12260 FvH4_7g12260 FvH4_7g12260
malus_domestica	MD00G1162200.v1.1 MD15G1130900.v1.1
prunus_persica	Prupe.1G388300_v2.0.a1 Prupe.1G489700_v2.0.a1 Prupe.1G489700_v2.0.a1 Prupe.1G489700_v2.0.a1 Prupe.1G517200_v2.0.a1 Prupe.1G519100_v2.0.a1
pyrus_communis	pycom15g11800 pycom15g33150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	551
AccII	CGCG	2 cut(s)	285, 492
AccIII	TCCGGA	1 cut(s)	318
AclWI	GGATC	2 cut(s)	40, 425
AcsI	RAATTY	1 cut(s)	98
AgsI	TTSAA	4 cut(s)	82, 146, 389, 438
AjnI	CCWGG	1 cut(s)	27
AluBI	AGCT	3 cut(s)	24, 538, 568
AluI	AGCT	3 cut(s)	24, 538, 568
Alw21I	GWGCWC	1 cut(s)	570
Alw26I	GTCTC	1 cut(s)	592
AlwI	GGATC	2 cut(s)	40, 425
Aor13HI	TCCGGA	1 cut(s)	318
ApeKI	GCWGC	3 cut(s)	8, 24, 487
ApoI	RAATTY	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	492
AspS9I	GGNCC	1 cut(s)	457
AvaII	GGWCC	1 cut(s)	457
BanII	GRGCYC	1 cut(s)	570
Bbv12I	GWGCWC	1 cut(s)	570
BbvI	GCAGC	3 cut(s)	11, 20, 499
BccI	CCATC	5 cut(s)	117, 223, 343, 348, 579
BceAI	ACGGC	1 cut(s)	500
BciT130I	CCWGG	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	592
BisI	GCNGC	3 cut(s)	9, 25, 488
BlsI	GCNGC	3 cut(s)	10, 26, 489
Bme1390I	CCNGG	1 cut(s)	29
Bme18I	GGWCC	1 cut(s)	457
BmgT120I	GGNCC	1 cut(s)	457
BmrFI	CCNGG	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	28
BsaWI	WCCGGW	1 cut(s)	318
BseAI	TCCGGA	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	4 cut(s)	10, 46, 249, 335
BseMII	CTCAG	2 cut(s)	110, 507
BseXI	GCAGC	3 cut(s)	11, 20, 499
Bsh1236I	CGCG	2 cut(s)	285, 492
BsiHKAI	GWGCWC	1 cut(s)	570
BsiSI	CCGG	1 cut(s)	319
BsmAI	GTCTC	1 cut(s)	592
Bsp1286I	GDGCHC	1 cut(s)	570
Bsp13I	TCCGGA	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	32, 430
Bsp68I	TCGCGA	1 cut(s)	285
BspCNI	CTCAG	2 cut(s)	111, 508
BspEI	TCCGGA	1 cut(s)	318
BspFNI	CGCG	2 cut(s)	285, 492
BspHI	TCATGA	1 cut(s)	256
BspPI	GGATC	2 cut(s)	40, 425
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	2 cut(s)	32, 430
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	1 cut(s)	239
BstDEI	CTNAG	3 cut(s)	119, 516, 591
BstF5I	GGATG	4 cut(s)	10, 46, 249, 335
BstFNI	CGCG	2 cut(s)	285, 492
BstHHI	GCGC	1 cut(s)	492
BstKTI	GATC	2 cut(s)	35, 433
BstMAI	GTCTC	1 cut(s)	592
BstMBI	GATC	2 cut(s)	32, 430
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	27
BstUI	CGCG	2 cut(s)	285, 492
BstV1I	GCAGC	3 cut(s)	11, 20, 499
BstX2I	RGATCY	2 cut(s)	32, 430
BstYI	RGATCY	2 cut(s)	32, 430
BtgZI	GCGATG	2 cut(s)	26, 300
BtsCI	GGATG	4 cut(s)	10, 46, 249, 335
BtuMI	TCGCGA	1 cut(s)	285
CciI	TCATGA	1 cut(s)	256
CfoI	GCGC	1 cut(s)	492
Cfr13I	GGNCC	1 cut(s)	457
CseI	GACGC	1 cut(s)	266
CviAII	CATG	2 cut(s)	257, 418
CviJI	RGCY	7 cut(s)	24, 94, 117, 334, 530, 538, 568
CviKI_1	RGCY	7 cut(s)	24, 94, 117, 334, 530, 538, 568
DdeI	CTNAG	3 cut(s)	119, 516, 591
DpnI	GATC	2 cut(s)	34, 432
DpnII	GATC	2 cut(s)	32, 430
DrdI	GACNNNNNNGTC	1 cut(s)	551
DseDI	GACNNNNNNGTC	1 cut(s)	551
Ecl136II	GAGCTC	1 cut(s)	568
Eco24I	GRGCYC	1 cut(s)	570
Eco47I	GGWCC	1 cut(s)	457
Eco53kI	GAGCTC	1 cut(s)	568
EcoICRI	GAGCTC	1 cut(s)	568
EcoRII	CCWGG	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	570
FaeI	CATG	2 cut(s)	260, 421
FaiI	YATR	9 cut(s)	114, 161, 183, 258, 329, 363, 365, 419, 560
FatI	CATG	2 cut(s)	256, 417
Fnu4HI	GCNGC	3 cut(s)	9, 25, 488
FokI	GGATG	4 cut(s)	17, 53, 256, 322
FriOI	GRGCYC	1 cut(s)	570
Fsp4HI	GCNGC	3 cut(s)	9, 25, 488
GlaI	GCGC	1 cut(s)	491
GluI	GCNGC	3 cut(s)	9, 25, 488
HapII	CCGG	1 cut(s)	319
HgaI	GACGC	1 cut(s)	266
HhaI	GCGC	1 cut(s)	492
Hin1II	CATG	2 cut(s)	260, 421
Hin6I	GCGC	1 cut(s)	490
HinP1I	GCGC	1 cut(s)	490
HinfI	GANTC	2 cut(s)	224, 421
HpaII	CCGG	1 cut(s)	319
Hpy166II	GTNNAC	4 cut(s)	106, 235, 457, 513
Hpy188I	TCNGA	3 cut(s)	223, 426, 576
Hpy188III	TCNNGA	7 cut(s)	103, 257, 284, 319, 344, 438, 613
Hpy8I	GTNNAC	4 cut(s)	106, 235, 457, 513
HpyAV	CCTTC	6 cut(s)	80, 228, 293, 387, 444, 445
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	2 cut(s)	8, 558
HpyF3I	CTNAG	3 cut(s)	119, 516, 591
HpySE526I	ACGT	1 cut(s)	352
Hsp92II	CATG	2 cut(s)	260, 421
HspAI	GCGC	1 cut(s)	490
Kpn2I	TCCGGA	1 cut(s)	318
Kzo9I	GATC	2 cut(s)	32, 430
LmnI	GCTCC	1 cut(s)	573
LpnPI	CCDG	5 cut(s)	14, 41, 131, 332, 427
Lsp1109I	GCAGC	3 cut(s)	11, 20, 499
MaeII	ACGT	1 cut(s)	352
MaeIII	GTNAC	2 cut(s)	353, 493
MalI	GATC	2 cut(s)	34, 432
MboI	GATC	2 cut(s)	32, 430
MboII	GAAGA	1 cut(s)	307
MflI	RGATCY	2 cut(s)	32, 430
MhlI	GDGCHC	1 cut(s)	570
MluCI	AATT	4 cut(s)	98, 292, 324, 399
MlyI	GAGTC	1 cut(s)	415
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	4 cut(s)	264, 291, 384, 498
MroI	TCCGGA	1 cut(s)	318
MseI	TTAA	6 cut(s)	45, 168, 188, 273, 462, 606
MspI	CCGG	1 cut(s)	319
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
MvnI	CGCG	2 cut(s)	285, 492
NdeII	GATC	2 cut(s)	32, 430
NlaIII	CATG	2 cut(s)	260, 421
NmuCI	GTSAC	1 cut(s)	493
NruI	TCGCGA	1 cut(s)	285
PagI	TCATGA	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	1 cut(s)	349
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	3 cut(s)	10, 26, 489
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
Psp124BI	GAGCTC	1 cut(s)	570
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	457
PsuI	RGATCY	2 cut(s)	32, 430
RruI	TCGCGA	1 cut(s)	285
SacI	GAGCTC	1 cut(s)	570
SaqAI	TTAA	6 cut(s)	45, 168, 188, 273, 462, 606
SatI	GCNGC	3 cut(s)	9, 25, 488
Sau3AI	GATC	2 cut(s)	32, 430
Sau96I	GGNCC	1 cut(s)	457
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	570
SinI	GGWCC	1 cut(s)	457
Sse9I	AATT	4 cut(s)	98, 292, 324, 399
SstI	GAGCTC	1 cut(s)	570
StyD4I	CCNGG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	1 cut(s)	227
TasI	AATT	4 cut(s)	98, 292, 324, 399
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	6 cut(s)	45, 168, 188, 273, 462, 606
Tru9I	TTAA	6 cut(s)	45, 168, 188, 273, 462, 606
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	3 cut(s)	8, 24, 487
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	4 cut(s)	273, 344, 369, 380
VpaK11BI	GGWCC	1 cut(s)	457
XapI	RAATTY	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.