Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016918

Physical Location & Seq

Genomic Coordinates Reverse (-)

34712908 .. 34715588

Gene Structure 2681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G388300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGATAAAGCAGTTATTAAAAGCTGCTTGGGATCCTGGCATGTTAGAGTTGGCAGGACTGTTGATGGGGTGCTGTCTTTTGAAGAAGGTTGGGAAGAATTTGTGAACCATCATGGCCTGAAACTTGGAGAAATTTTGATATTTAAACACAACGGCAAAAGGGCATTCAATGTGGTTGCCTATGAGGCACTTGGTAGGGAGAAAAGGAAAAAGCCCTCAGAAGCAACTGCATCCTCAACCTCAAGGACTTCGTTCGCGTGCACGATGAAAAAATCCCCTGATCATCCAACTTGTACAAACCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

102

Amino Acids

11.25

Weight (kDa)

9.33

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016918)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12210 FvH4_7g12260 FvH4_7g12260 FvH4_7g12260
malus_domestica	MD00G1162200.v1.1 MD15G1130900.v1.1
prunus_persica	Prupe.1G388300_v2.0.a1 Prupe.1G489700_v2.0.a1 Prupe.1G489700_v2.0.a1 Prupe.1G489700_v2.0.a1 Prupe.1G517200_v2.0.a1 Prupe.1G519100_v2.0.a1
pyrus_communis	pycom15g11800 pycom15g33150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	257
AclWI	GGATC	2 cut(s)	27, 40
AcsI	RAATTY	2 cut(s)	98, 132
AfaI	GTAC	1 cut(s)	295
AgsI	TTSAA	2 cut(s)	83, 169
AjnI	CCWGG	1 cut(s)	35
AluBI	AGCT	1 cut(s)	24
AluI	AGCT	1 cut(s)	24
Alw21I	GWGCWC	1 cut(s)	263
Alw44I	GTGCAC	1 cut(s)	259
AlwI	GGATC	2 cut(s)	27, 40
AoxI	GGCC	1 cut(s)	115
ApaLI	GTGCAC	1 cut(s)	259
ApeKI	GCWGC	1 cut(s)	24
ApoI	RAATTY	2 cut(s)	98, 132
BaeGI	GKGCMC	1 cut(s)	263
BamHI	GGATCC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	11
BccI	CCATC	2 cut(s)	59, 117
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	37
BclI	TGATCA	1 cut(s)	280
BglI	GCCNNNNNGGC	1 cut(s)	185
BisI	GCNGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	26
Bme1390I	CCNGG	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	37
BmsI	GCATC	1 cut(s)	239
BpuEI	CTTGAG	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	37
BseGI	GGATG	2 cut(s)	230, 283
BseMII	CTCAG	1 cut(s)	231
BseSI	GKGCMC	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	11
Bsh1236I	CGCG	1 cut(s)	257
BshFI	GGCC	1 cut(s)	117
BsiHKAI	GWGCWC	1 cut(s)	263
BsmI	GAATGC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp1407I	TGTACA	1 cut(s)	293
Bsp143I	GATC	2 cut(s)	32, 280
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	1 cut(s)	230
BspFNI	CGCG	1 cut(s)	257
BspLI	GGNNCC	1 cut(s)	34
BspPI	GGATC	2 cut(s)	27, 40
BsrGI	TGTACA	1 cut(s)	293
BssMI	GATC	2 cut(s)	32, 280
Bst2UI	CCWGG	1 cut(s)	37
Bst4CI	ACNGT	1 cut(s)	61
BstAUI	TGTACA	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	1 cut(s)	217
BstF5I	GGATG	2 cut(s)	230, 283
BstFNI	CGCG	1 cut(s)	257
BstKTI	GATC	2 cut(s)	35, 283
BstMBI	GATC	2 cut(s)	32, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNI	CCWGG	1 cut(s)	37
BstNSI	RCATGY	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	35
BstSLI	GKGCMC	1 cut(s)	263
BstUI	CGCG	1 cut(s)	257
BstV1I	GCAGC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	117
BtsCI	GGATG	2 cut(s)	230, 283
Cac8I	GCNNGC	1 cut(s)	259
Csp6I	GTAC	1 cut(s)	294
CviAII	CATG	2 cut(s)	41, 113
CviJI	RGCY	3 cut(s)	24, 117, 214
CviKI_1	RGCY	3 cut(s)	24, 117, 214
CviQI	GTAC	1 cut(s)	294
DdeI	CTNAG	1 cut(s)	217
DpnI	GATC	2 cut(s)	34, 282
DpnII	GATC	2 cut(s)	32, 280
DraI	TTTAAA	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	35
FaeI	CATG	2 cut(s)	44, 116
FaiI	YATR	3 cut(s)	42, 114, 183
FatI	CATG	2 cut(s)	40, 112
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	1 cut(s)	25
FokI	GGATG	2 cut(s)	217, 270
Fsp4HI	GCNGC	1 cut(s)	25
GluI	GCNGC	1 cut(s)	25
HaeIII	GGCC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	44, 116
Hpy166II	GTNNAC	2 cut(s)	106, 261
Hpy188I	TCNGA	1 cut(s)	220
Hpy8I	GTNNAC	2 cut(s)	106, 261
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	2 cut(s)	230, 261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	1 cut(s)	217
Hsp92II	CATG	2 cut(s)	44, 116
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	2 cut(s)	32, 280
LpnPI	CCDG	5 cut(s)	22, 40, 49, 131, 291
Lsp1109I	GCAGC	1 cut(s)	11
LweI	GCATC	1 cut(s)	239
MalI	GATC	2 cut(s)	34, 282
MboI	GATC	2 cut(s)	32, 280
MboII	GAAGA	2 cut(s)	95, 107
MflI	RGATCY	1 cut(s)	32
MhlI	GDGCHC	1 cut(s)	263
MluCI	AATT	2 cut(s)	98, 132
MnlI	CCTC	4 cut(s)	178, 226, 244, 250
MseI	TTAA	2 cut(s)	18, 144
MspR9I	CCNGG	1 cut(s)	37
Mva1269I	GAATGC	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	37
MvnI	CGCG	1 cut(s)	257
MwoI	GCNNNNNNNGC	1 cut(s)	185
NdeII	GATC	2 cut(s)	32, 280
NlaIII	CATG	2 cut(s)	44, 116
NlaIV	GGNNCC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	44
PctI	GAATGC	1 cut(s)	164
PkrI	GCNGC	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	35
PspGI	CCWGG	1 cut(s)	35
PspN4I	GGNNCC	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	32
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
SaqAI	TTAA	2 cut(s)	18, 144
SatI	GCNGC	1 cut(s)	25
Sau3AI	GATC	2 cut(s)	32, 280
ScrFI	CCNGG	1 cut(s)	37
SduI	GDGCHC	1 cut(s)	263
SetI	ASST	3 cut(s)	26, 91, 242
SfaNI	GCATC	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	241
SmoI	CTYRAG	1 cut(s)	241
Sse9I	AATT	2 cut(s)	98, 132
StyD4I	CCNGG	1 cut(s)	35
TaaI	ACNGT	1 cut(s)	61
TasI	AATT	2 cut(s)	98, 132
TatI	WGTACW	1 cut(s)	293
Tru1I	TTAA	2 cut(s)	18, 144
Tru9I	TTAA	2 cut(s)	18, 144
TseI	GCWGC	1 cut(s)	24
TspDTI	ATGAA	1 cut(s)	281
VneI	GTGCAC	1 cut(s)	259
XapI	RAATTY	2 cut(s)	98, 132
XceI	RCATGY	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.