Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0016918

Physical Location & Seq

Genomic Coordinates Reverse (-)

36228305 .. 36230728

Gene Structure 2424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1162200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGATGAAAGCGTTGAGCCTGGCAATTCCAATAGCCTTTACTAGAAGCCTTGGCGAAAAGAAATTGGATAAAGCACTTATTAAGAGCTGTCAGGGATCCTGGGATGTTCAAGTTCGTAGGACTTGCGATGGAGTGTTTTGTTTTAAACAAGGTTGGAAGGAAGTTGTGAAGAATCATAGCCTGGAAGTTGGAGAGTTCCTAGTCTTTGAACACAAAGGCAACATGGTCTTTAATGTGAAAGTCTATGAGCCACTAGGTTGTGAGAAAATGTTTCCTCCTCCCTCCTTCAGGTTAATAATGGCAAAAACTCATTGGAACGTCAAATGTCCTAGCGCGACAATCCCCCTTGACTTCGCAAGATCAACTGGCATTCTTGACAAATCCTGCATGCGTGTTAAAGATCCGTTTGGAAAATTATGGCCAATGGACATAGGAATTGTGAAAGATAAAGAGAAAATTGAAGCTGCTTGGAGTCGTCGTACATATTTAAAAAGTAAAGGGTGGATTGAGTTTTACAAAGCCAACAAACTGAAGGACGCAGATGTTTGCATCTTTGAGCTCATTCAGGTGCCAAAGTCAAGATCAAAACCCGTCATTATGAATGTCAAGATATTCCGCTTTGGATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

210

Amino Acids

23.99

Weight (kDa)

9.65

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	6 - 81	1.1e-11	B3 DNA binding domain
B3	PF02362	108 - 192	5.6e-10	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016918)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12210 FvH4_7g12260 FvH4_7g12260 FvH4_7g12260
malus_domestica	MD00G1162200.v1.1 MD15G1130900.v1.1
prunus_persica	Prupe.1G388300_v2.0.a1 Prupe.1G489700_v2.0.a1 Prupe.1G489700_v2.0.a1 Prupe.1G489700_v2.0.a1 Prupe.1G517200_v2.0.a1 Prupe.1G519100_v2.0.a1
pyrus_communis	pycom15g11800 pycom15g33150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	568
AccII	CGCG	1 cut(s)	335
AciI	CCGC	1 cut(s)	616
AclWI	GGATC	3 cut(s)	90, 103, 395
AcoI	YGGCCR	1 cut(s)	419
AcuI	CTGAAG	2 cut(s)	271, 551
AfaI	GTAC	1 cut(s)	481
AfiI	CCNNNNNNNGG	1 cut(s)	288
AgsI	TTSAA	3 cut(s)	110, 209, 461
AjnI	CCWGG	3 cut(s)	18, 98, 180
AluBI	AGCT	3 cut(s)	87, 464, 559
AluI	AGCT	3 cut(s)	87, 464, 559
Alw21I	GWGCWC	1 cut(s)	561
AlwI	GGATC	3 cut(s)	90, 103, 395
AoxI	GGCC	1 cut(s)	419
ApeKI	GCWGC	1 cut(s)	464
AspLEI	GCGC	1 cut(s)	335
BalI	TGGCCA	1 cut(s)	421
BamHI	GGATCC	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	568
BanII	GRGCYC	1 cut(s)	561
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	1 cut(s)	451
BccI	CCATC	1 cut(s)	122
BciT130I	CCWGG	3 cut(s)	20, 100, 182
BfaI	CTAG	4 cut(s)	42, 200, 254, 330
BisI	GCNGC	1 cut(s)	465
BlsI	GCNGC	1 cut(s)	466
Bme1390I	CCNGG	3 cut(s)	20, 100, 182
BmiI	GGNNCC	2 cut(s)	97, 570
BmrFI	CCNGG	3 cut(s)	20, 100, 182
BmsI	GCATC	1 cut(s)	558
BsaJI	CCNNGG	2 cut(s)	49, 99
BsaXI	ACNNNNNCTCC	2 cut(s)	463, 493
Bsc4I	CCNNNNNNNGG	1 cut(s)	288
Bse1I	ACTGG	1 cut(s)	370
BseBI	CCWGG	3 cut(s)	20, 100, 182
BseDI	CCNNGG	2 cut(s)	49, 99
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	288
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	451
Bsh1236I	CGCG	1 cut(s)	335
BshFI	GGCC	1 cut(s)	421
BshNI	GGYRCC	1 cut(s)	568
BsiHKAI	GWGCWC	1 cut(s)	561
BslI	CCNNNNNNNGG	1 cut(s)	288
BsmI	GAATGC	1 cut(s)	369
BsnI	GGCC	1 cut(s)	421
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp143I	GATC	5 cut(s)	95, 359, 400, 581, 623
BspACI	CCGC	1 cut(s)	616
BspANI	GGCC	1 cut(s)	421
BspFNI	CGCG	1 cut(s)	335
BspLI	GGNNCC	2 cut(s)	97, 570
BspPI	GGATC	3 cut(s)	90, 103, 395
BspT107I	GGYRCC	1 cut(s)	568
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	2 cut(s)	49, 99
BssMI	GATC	5 cut(s)	95, 359, 400, 581, 623
BssT1I	CCWWGG	1 cut(s)	49
Bst2UI	CCWGG	3 cut(s)	20, 100, 182
BstC8I	GCNNGC	1 cut(s)	389
BstENI	CCTNNNNNAGG	1 cut(s)	286
BstF5I	GGATG	1 cut(s)	109
BstFNI	CGCG	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	5 cut(s)	98, 362, 403, 584, 626
BstMBI	GATC	5 cut(s)	95, 359, 400, 581, 623
BstNI	CCWGG	3 cut(s)	20, 100, 182
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	3 cut(s)	18, 98, 180
BstUI	CGCG	1 cut(s)	335
BstV1I	GCAGC	1 cut(s)	451
BstX2I	RGATCY	2 cut(s)	95, 400
BstYI	RGATCY	2 cut(s)	95, 400
BsuRI	GGCC	1 cut(s)	421
BtgZI	GCGATG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	389
CfoI	GCGC	1 cut(s)	335
CseI	GACGC	1 cut(s)	545
Csp6I	GTAC	1 cut(s)	480
CviAII	CATG	2 cut(s)	223, 388
CviQI	GTAC	1 cut(s)	480
DpnI	GATC	5 cut(s)	97, 361, 402, 583, 625
DpnII	GATC	5 cut(s)	95, 359, 400, 581, 623
DraI	TTTAAA	2 cut(s)	145, 489
EaeI	YGGCCR	1 cut(s)	419
Ecl136II	GAGCTC	1 cut(s)	559
Eco130I	CCWWGG	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	561
Eco53kI	GAGCTC	1 cut(s)	559
Eco57I	CTGAAG	2 cut(s)	271, 551
EcoICRI	GAGCTC	1 cut(s)	559
EcoNI	CCTNNNNNAGG	1 cut(s)	286
EcoRII	CCWGG	3 cut(s)	18, 98, 180
EcoT14I	CCWWGG	1 cut(s)	49
EcoT38I	GRGCYC	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	49
FaeI	CATG	2 cut(s)	226, 391
FaiI	YATR	8 cut(s)	177, 224, 246, 389, 418, 431, 484, 599
FatI	CATG	2 cut(s)	222, 387
Fnu4HI	GCNGC	1 cut(s)	465
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	561
Fsp4HI	GCNGC	1 cut(s)	465
FspBI	CTAG	4 cut(s)	42, 200, 254, 330
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	1 cut(s)	465
HaeIII	GGCC	1 cut(s)	421
HgaI	GACGC	1 cut(s)	545
HhaI	GCGC	1 cut(s)	335
Hin1II	CATG	2 cut(s)	226, 391
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HinfI	GANTC	2 cut(s)	172, 472
Hpy188III	TCNNGA	3 cut(s)	374, 579, 607
Hpy99I	CGWCG	1 cut(s)	480
HpyAV	CCTTC	3 cut(s)	151, 295, 526
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	2 cut(s)	387, 549
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	2 cut(s)	226, 391
HspAI	GCGC	1 cut(s)	333
Kzo9I	GATC	5 cut(s)	95, 359, 400, 581, 623
Lsp1109I	GCAGC	1 cut(s)	451
LweI	GCATC	1 cut(s)	558
MaeI	CTAG	4 cut(s)	42, 200, 254, 330
MaeII	ACGT	1 cut(s)	318
MalI	GATC	5 cut(s)	97, 361, 402, 583, 625
MboI	GATC	5 cut(s)	95, 359, 400, 581, 623
MboII	GAAGA	1 cut(s)	181
MflI	RGATCY	2 cut(s)	95, 400
MhlI	GDGCHC	1 cut(s)	561
MlsI	TGGCCA	1 cut(s)	421
MluCI	AATT	5 cut(s)	24, 62, 413, 435, 456
MluNI	TGGCCA	1 cut(s)	421
MlyI	GAGTC	1 cut(s)	481
MmeI	TCCRAC	2 cut(s)	134, 169
MnlI	CCTC	3 cut(s)	285, 288, 292
Mox20I	TGGCCA	1 cut(s)	421
MscI	TGGCCA	1 cut(s)	421
MseI	TTAA	6 cut(s)	81, 144, 231, 293, 396, 488
MslI	CAYNNNNRTG	1 cut(s)	566
Msp20I	TGGCCA	1 cut(s)	421
MspR9I	CCNGG	3 cut(s)	20, 100, 182
Mva1269I	GAATGC	1 cut(s)	369
MvaI	CCWGG	3 cut(s)	20, 100, 182
MvnI	CGCG	1 cut(s)	335
NdeII	GATC	5 cut(s)	95, 359, 400, 581, 623
NlaIII	CATG	2 cut(s)	226, 391
NlaIV	GGNNCC	2 cut(s)	97, 570
NspI	RCATGY	1 cut(s)	391
PaeI	GCATGC	1 cut(s)	391
PctI	GAATGC	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	466
PleI	GAGTC	1 cut(s)	480
PpsI	GAGTC	1 cut(s)	480
Psp124BI	GAGCTC	1 cut(s)	561
Psp6I	CCWGG	3 cut(s)	18, 98, 180
PspGI	CCWGG	3 cut(s)	18, 98, 180
PspN4I	GGNNCC	2 cut(s)	97, 570
PsuI	RGATCY	2 cut(s)	95, 400
RsaI	GTAC	1 cut(s)	481
RsaNI	GTAC	1 cut(s)	480
RseI	CAYNNNNRTG	1 cut(s)	566
SacI	GAGCTC	1 cut(s)	561
SaqAI	TTAA	6 cut(s)	81, 144, 231, 293, 396, 488
SatI	GCNGC	1 cut(s)	465
Sau3AI	GATC	5 cut(s)	95, 359, 400, 581, 623
SchI	GAGTC	1 cut(s)	481
ScrFI	CCNGG	3 cut(s)	20, 100, 182
SduI	GDGCHC	1 cut(s)	561
SetI	ASST	8 cut(s)	89, 154, 259, 293, 321, 466, 561, 570
SfaNI	GCATC	1 cut(s)	558
SmiMI	CAYNNNNRTG	1 cut(s)	566
SphI	GCATGC	1 cut(s)	391
Sse9I	AATT	5 cut(s)	24, 62, 413, 435, 456
SsiI	CCGC	1 cut(s)	616
SspMI	CTAG	4 cut(s)	42, 200, 254, 330
SstI	GAGCTC	1 cut(s)	561
StyD4I	CCNGG	3 cut(s)	18, 98, 180
StyI	CCWWGG	1 cut(s)	49
TaiI	ACGT	1 cut(s)	321
TasI	AATT	5 cut(s)	24, 62, 413, 435, 456
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	6 cut(s)	81, 144, 231, 293, 396, 488
Tru9I	TTAA	6 cut(s)	81, 144, 231, 293, 396, 488
TseI	GCWGC	1 cut(s)	464
TspDTI	ATGAA	2 cut(s)	20, 614
TspGWI	ACGGA	1 cut(s)	393
XagI	CCTNNNNNAGG	1 cut(s)	286
XceI	RCATGY	1 cut(s)	391
XspI	CTAG	4 cut(s)	42, 200, 254, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.