Prupe.1G519100_v2.0.a1

B3 domain-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
42631238 .. 42634236
2999 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G519100.1

Sequence Viewer

Length: 471 bp
ATGCTCCGTGTTTTTCAAGTTTTTGGTTCCTGGGTTCAACAAACGACTTATTGTATTCGAAAAAGTGCAAAACAAACTACTATAGTTACTTCCGCTATGCAGACAATATTGATGTTGAACATATTGGCACACAATCTCCAACTAAAAGTTTTGTCAGTGGGAGTGTTCAAAAGATTGGTATCTCAAATTGTCATCTATGAGACTTTTGATTCAATCAATCAGTGGGAGGAAAAGTCACTTCCAGTAGCTTTCAGTAGTTCTCTGAGTGAAAAGAAACTGGATAAAGCAGTTATTAAAAGCTGCTTGGGATCTTGGTGTGTGAGACTTGGCAGGAGTGTTGATGGAGTACTTTCTTTCGAAGAAGGTTGGGAAGTTTTTGTGAACCATCACGGCCTGAACATTGGAGAAATGGTAGTATTTGAACACAAAGGCAAAATGGTGTTCACTGTGGTTGCCTATGAGTCTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

157

Amino Acids

17.74

Weight (kDa)

8.81

Isoelectric Point (pI)

40.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 93
AclWI GGATC 1 cut(s) 316
AfaI GTAC 1 cut(s) 348
AgsI TTSAA 6 cut(s) 17, 38, 118, 169, 213, 422
AjnI CCWGG 1 cut(s) 29
AluBI AGCT 2 cut(s) 248, 300
AluI AGCT 2 cut(s) 248, 300
Alw26I GTCTC 2 cut(s) 194, 316
AlwI GGATC 1 cut(s) 316
AoxI GGCC 1 cut(s) 391
ApeKI GCWGC 1 cut(s) 300
AsuII TTCGAA 2 cut(s) 58, 357
BbvI GCAGC 1 cut(s) 287
BccI CCATC 2 cut(s) 335, 393
BceAI ACGGC 1 cut(s) 406
BciT130I CCWGG 1 cut(s) 31
BcoDI GTCTC 2 cut(s) 194, 316
BfmI CTRYAG 1 cut(s) 81
BisI GCNGC 1 cut(s) 301
BlsI GCNGC 1 cut(s) 302
BmcAI AGTACT 1 cut(s) 348
Bme1390I CCNGG 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 1 cut(s) 31
Bpu14I TTCGAA 2 cut(s) 58, 357
BsaBI GATNNNNATC 1 cut(s) 178
BsaJI CCNNGG 1 cut(s) 30
BsaXI ACNNNNNCTCC 6 cut(s) 120, 150, 218, 248, 396, 426
Bse1I ACTGG 2 cut(s) 242, 282
Bse8I GATNNNNATC 1 cut(s) 178
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 30
BseJI GATNNNNATC 1 cut(s) 178
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 2 cut(s) 242, 282
BseXI GCAGC 1 cut(s) 287
BshFI GGCC 1 cut(s) 393
BsmAI GTCTC 2 cut(s) 194, 316
BsnI GGCC 1 cut(s) 393
Bsp119I TTCGAA 2 cut(s) 58, 357
Bsp143I GATC 1 cut(s) 308
BspACI CCGC 1 cut(s) 93
BspANI GGCC 1 cut(s) 393
BspCNI CTCAG 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 28
BspPI GGATC 1 cut(s) 316
BspT104I TTCGAA 2 cut(s) 58, 357
BsrI ACTGG 2 cut(s) 242, 282
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 1 cut(s) 308
Bst2UI CCWGG 1 cut(s) 31
Bst4CI ACNGT 1 cut(s) 448
BstBI TTCGAA 2 cut(s) 58, 357
BstDEI CTNAG 1 cut(s) 263
BstKTI GATC 1 cut(s) 311
BstMAI GTCTC 2 cut(s) 194, 316
BstMBI GATC 1 cut(s) 308
BstNI CCWGG 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 29
BstSFI CTRYAG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 287
BstX2I RGATCY 1 cut(s) 308
BstYI RGATCY 1 cut(s) 308
BsuRI GGCC 1 cut(s) 393
BtsIMutI CAGTG 3 cut(s) 162, 227, 444
Csp6I GTAC 1 cut(s) 347
CviJI RGCY 3 cut(s) 248, 300, 393
CviKI_1 RGCY 3 cut(s) 248, 300, 393
CviQI GTAC 1 cut(s) 347
DdeI CTNAG 1 cut(s) 263
DpnI GATC 1 cut(s) 310
DpnII GATC 1 cut(s) 308
EcoRII CCWGG 1 cut(s) 29
FaiI YATR 5 cut(s) 83, 98, 122, 198, 459
Fnu4HI GCNGC 1 cut(s) 301
Fsp4HI GCNGC 1 cut(s) 301
GluI GCNGC 1 cut(s) 301
HaeIII GGCC 1 cut(s) 393
HinfI GANTC 2 cut(s) 209, 461
Hpy166II GTNNAC 2 cut(s) 382, 444
Hpy188I TCNGA 1 cut(s) 264
Hpy8I GTNNAC 2 cut(s) 382, 444
HpyAV CCTTC 1 cut(s) 356
HpyCH4III ACNGT 1 cut(s) 448
HpyCH4V TGCA 2 cut(s) 68, 100
HpyF3I CTNAG 1 cut(s) 263
Kzo9I GATC 1 cut(s) 308
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 6 cut(s) 16, 43, 255, 263, 316, 407
Lsp1109I GCAGC 1 cut(s) 287
MaeIII GTNAC 2 cut(s) 85, 234
MalI GATC 1 cut(s) 310
MboI GATC 1 cut(s) 308
MboII GAAGA 1 cut(s) 371
MflI RGATCY 1 cut(s) 308
MluCI AATT 1 cut(s) 186
MlyI GAGTC 1 cut(s) 470
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 1 cut(s) 220
MseI TTAA 1 cut(s) 294
MspR9I CCNGG 1 cut(s) 31
MvaI CCWGG 1 cut(s) 31
NdeII GATC 1 cut(s) 308
NlaIV GGNNCC 1 cut(s) 28
NmuCI GTSAC 1 cut(s) 234
NspV TTCGAA 2 cut(s) 58, 357
PfeI GAWTC 1 cut(s) 209
PkrI GCNGC 1 cut(s) 302
PleI GAGTC 1 cut(s) 469
PpsI GAGTC 1 cut(s) 469
Psp6I CCWGG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 28
PsuI RGATCY 1 cut(s) 308
RsaI GTAC 1 cut(s) 348
RsaNI GTAC 1 cut(s) 347
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 1 cut(s) 301
Sau3AI GATC 1 cut(s) 308
ScaI AGTACT 1 cut(s) 348
SchI GAGTC 1 cut(s) 470
ScrFI CCNGG 1 cut(s) 31
SetI ASST 3 cut(s) 250, 302, 367
SfcI CTRYAG 1 cut(s) 81
SfuI TTCGAA 2 cut(s) 58, 357
Sse9I AATT 1 cut(s) 186
SsiI CCGC 1 cut(s) 93
SspI AATATT 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 448
TaqI TCGA 2 cut(s) 58, 357
TasI AATT 1 cut(s) 186
TatI WGTACW 1 cut(s) 346
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 3 cut(s) 162, 227, 451
TseFI GTSAC 1 cut(s) 234
TseI GCWGC 1 cut(s) 300
Tsp45I GTSAC 1 cut(s) 234
TspRI CASTG 3 cut(s) 162, 227, 451
ZrmI AGTACT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.