Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0016918

Physical Location & Seq

Genomic Coordinates Forward (+)

32488020 .. 32490215

Gene Structure 2196 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g33150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGCCCCGCACGCAACATGCGGATAACAAATCACCTTGTGAAAGTAAAAAAGTGGCAACCAAAGCCAAGGGTTTCAAGATCTATTATGTCTATATAATTCGTTTAGGTGTGTCAAGTTCGATTTACGTCCAAAGTGAATTTAAACCATATTCTTGTCACGGGACTTCTTTCAAATTAGCAGCGAGGCTGGGTGATGCAATAGTTTCAGGCGGCGTTTCTGCAGAGTACGAACTCGCCGTACGACCTCCAGCCAATGGCATTCATGGATTCGCCACCCCTTTTCTGCCACCCACTGCTGCGTTGGCCACTTCCTATGTACTGTCCCTTCAACCTATATATTCAACACTATTCTCCTCCTCCGCCGCAGCTCGCAAAACCAAAAAAACCCTAACTTTTCACCTCCCCTCTAAATTTCTCCTCTTTTCTTCACATTTCTTTTATCTGCACTTGGCAGATTGGTCGAGATTCATGGCCAGGTCACCTCCTTTTCCCAGAAGGTTTTTCAAGCCTTTGACGCCTGGCTTCCAAAATGGAATGGCAATTCCAATAGCCTTTACTAGAAGCCTCGGCGAAAAGAAATTGGATAAAGCACTTATTAAGAGCTGTCAAGGATCCTGGGATGTTAAAGTTCGTAGGACTTGCGATGGAGTGTTTTGTTTTAAACAAGGTTGGAAGGAAGTTGTGAAGAATCATAGCCTGGAAGTTGGAGAGTTCCTAGTCTTTGAACACAAAGGCAACATGGTCTTTAATGTGAAAGTCTATGAGCCACTAGGTTGTGAGAAAAAGTTTCCTCCTCCCTCCTTCAGGTTAATCATGGCAAAAACTCATTGGAACGTCAAATGTCCTAGCGCGACAATCCCCCTTGACTTCGCAAGATCAACTGGCATTCTTGACAAATCCTGCATGCGTGTTAAAGATCCGTTTGGAAAAGCATGGCCAATGGACATAGGAATTGTGAAAGATAAAGAGAAAATTGAAGTTGCTAGGAGTTGTCGTATGTATTTAAAAAGTAAAGGGTGGATTGAGTTTTACAAAGCCAACAAACTGAAGGACGCAGATGTTTGCATCTTTGAGCTCATTCGGGTGCCAAGGTCAAGATCAAAACCCGTCATTATGAATGTCAAGATATTCCGCTTTGGATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

382

Amino Acids

43.06

Weight (kDa)

9.9

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	174 - 253	1.6e-12	B3 DNA binding domain
B3	PF02362	282 - 362	3.7e-10	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016918)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12210 FvH4_7g12260 FvH4_7g12260 FvH4_7g12260
malus_domestica	MD00G1162200.v1.1 MD15G1130900.v1.1
prunus_persica	Prupe.1G388300_v2.0.a1 Prupe.1G489700_v2.0.a1 Prupe.1G489700_v2.0.a1 Prupe.1G489700_v2.0.a1 Prupe.1G517200_v2.0.a1 Prupe.1G519100_v2.0.a1
pyrus_communis	pycom15g11800 pycom15g33150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1084
AccB7I	CCANNNNNTGG	1 cut(s)	254
AccII	CGCG	1 cut(s)	851
AciI	CCGC	6 cut(s)	7, 20, 210, 360, 363, 1132
AclWI	GGATC	3 cut(s)	606, 619, 911
AcoI	YGGCCR	3 cut(s)	303, 471, 935
AcsI	RAATTY	2 cut(s)	137, 410
AcuI	CTGAAG	2 cut(s)	787, 1067
AcyI	GRCGYC	1 cut(s)	515
AdeI	CACNNNGTG	1 cut(s)	38
AfaI	GTAC	3 cut(s)	227, 240, 318
AfiI	CCNNNNNNNGG	2 cut(s)	254, 804
AgsI	TTSAA	7 cut(s)	76, 172, 329, 342, 505, 725, 977
AjnI	CCWGG	4 cut(s)	473, 517, 614, 696
AluBI	AGCT	3 cut(s)	368, 603, 1075
AluI	AGCT	3 cut(s)	368, 603, 1075
Alw21I	GWGCWC	1 cut(s)	1077
AlwI	GGATC	3 cut(s)	606, 619, 911
AoxI	GGCC	3 cut(s)	303, 471, 935
ApeKI	GCWGC	3 cut(s)	179, 296, 365
ApoI	RAATTY	2 cut(s)	137, 410
AspLEI	GCGC	1 cut(s)	851
AsuHPI	GGTGA	4 cut(s)	24, 203, 389, 471
BalI	TGGCCA	3 cut(s)	305, 473, 937
BamHI	GGATCC	1 cut(s)	611
BanI	GGYRCC	1 cut(s)	1084
BanII	GRGCYC	1 cut(s)	1077
BarI	GAAGNNNNNNTAC	2 cut(s)	309, 341
Bbv12I	GWGCWC	1 cut(s)	1077
BbvI	GCAGC	3 cut(s)	191, 283, 377
BccI	CCATC	1 cut(s)	638
BceAI	ACGGC	1 cut(s)	221
BcgI	CGANNNNNNTGC	2 cut(s)	441, 475
BciT130I	CCWGG	4 cut(s)	475, 519, 616, 698
BfaI	CTAG	5 cut(s)	558, 716, 770, 846, 984
BfmI	CTRYAG	1 cut(s)	219
BglII	AGATCT	1 cut(s)	78
BisI	GCNGC	5 cut(s)	180, 211, 297, 363, 366
BlsI	GCNGC	5 cut(s)	181, 212, 298, 364, 367
Bme1390I	CCNGG	4 cut(s)	475, 519, 616, 698
BmiI	GGNNCC	2 cut(s)	613, 1086
BmrFI	CCNGG	4 cut(s)	475, 519, 616, 698
BmsI	GCATC	2 cut(s)	184, 1074
BpmI	CTGGAG	1 cut(s)	231
BsaHI	GRCGYC	1 cut(s)	515
BsaJI	CCNNGG	4 cut(s)	66, 565, 615, 1088
BsaXI	ACNNNNNCTCC	2 cut(s)	979, 1009
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 804
Bse1I	ACTGG	1 cut(s)	886
BseBI	CCWGG	4 cut(s)	475, 519, 616, 698
BseDI	CCNNGG	4 cut(s)	66, 565, 615, 1088
BseGI	GGATG	1 cut(s)	625
BseLI	CCNNNNNNNGG	2 cut(s)	254, 804
BseNI	ACTGG	1 cut(s)	886
BseRI	GAGGAG	4 cut(s)	343, 346, 407, 783
BseXI	GCAGC	3 cut(s)	191, 283, 377
BseYI	CCCAGC	1 cut(s)	187
BsgI	GTGCAG	1 cut(s)	428
Bsh1236I	CGCG	1 cut(s)	851
BshFI	GGCC	3 cut(s)	305, 473, 937
BshNI	GGYRCC	1 cut(s)	1084
BsiHKAI	GWGCWC	1 cut(s)	1077
BsiWI	CGTACG	1 cut(s)	238
BslFI	GGGAC	2 cut(s)	175, 307
BslI	CCNNNNNNNGG	2 cut(s)	254, 804
BsmFI	GGGAC	2 cut(s)	175, 307
BsmI	GAATGC	2 cut(s)	258, 885
BsnI	GGCC	3 cut(s)	305, 473, 937
Bsp1286I	GDGCHC	1 cut(s)	1077
Bsp143I	GATC	6 cut(s)	78, 611, 875, 916, 1097, 1139
BspACI	CCGC	6 cut(s)	7, 20, 210, 360, 363, 1132
BspANI	GGCC	3 cut(s)	305, 473, 937
BspFNI	CGCG	1 cut(s)	851
BspLI	GGNNCC	2 cut(s)	613, 1086
BspMAI	CTGCAG	1 cut(s)	223
BspPI	GGATC	3 cut(s)	606, 619, 911
BspT107I	GGYRCC	1 cut(s)	1084
BsrI	ACTGG	1 cut(s)	886
BssECI	CCNNGG	4 cut(s)	66, 565, 615, 1088
BssMI	GATC	6 cut(s)	78, 611, 875, 916, 1097, 1139
BssNI	GRCGYC	1 cut(s)	515
BssT1I	CCWWGG	2 cut(s)	66, 1088
Bst2UI	CCWGG	4 cut(s)	475, 519, 616, 698
Bst4CI	ACNGT	1 cut(s)	321
BstACI	GRCGYC	1 cut(s)	515
BstC8I	GCNNGC	3 cut(s)	11, 370, 905
BstEII	GGTNACC	1 cut(s)	477
BstENI	CCTNNNNNAGG	1 cut(s)	802
BstF5I	GGATG	1 cut(s)	625
BstFNI	CGCG	1 cut(s)	851
BstHHI	GCGC	1 cut(s)	851
BstKTI	GATC	6 cut(s)	81, 614, 878, 919, 1100, 1142
BstMBI	GATC	6 cut(s)	78, 611, 875, 916, 1097, 1139
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 62, 302, 514
BstNI	CCWGG	4 cut(s)	475, 519, 616, 698
BstNSI	RCATGY	2 cut(s)	20, 907
BstPI	GGTNACC	1 cut(s)	477
BstSCI	CCNGG	4 cut(s)	473, 517, 614, 696
BstSFI	CTRYAG	1 cut(s)	219
BstUI	CGCG	1 cut(s)	851
BstV1I	GCAGC	3 cut(s)	191, 283, 377
BstX2I	RGATCY	3 cut(s)	78, 611, 916
BstYI	RGATCY	3 cut(s)	78, 611, 916
BsuRI	GGCC	3 cut(s)	305, 473, 937
BtgZI	GCGATG	1 cut(s)	657
BtsCI	GGATG	1 cut(s)	625
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	291
Cac8I	GCNNGC	3 cut(s)	11, 370, 905
CfoI	GCGC	1 cut(s)	851
CseI	GACGC	2 cut(s)	523, 1061
Csp6I	GTAC	3 cut(s)	226, 239, 317
CviAII	CATG	7 cut(s)	17, 263, 469, 739, 814, 904, 933
CviQI	GTAC	3 cut(s)	226, 239, 317
DpnI	GATC	6 cut(s)	80, 613, 877, 918, 1099, 1141
DpnII	GATC	6 cut(s)	78, 611, 875, 916, 1097, 1139
DraI	TTTAAA	3 cut(s)	142, 661, 1005
DraIII	CACNNNGTG	1 cut(s)	38
EaeI	YGGCCR	3 cut(s)	303, 471, 935
EciI	GGCGGA	1 cut(s)	349
Ecl136II	GAGCTC	1 cut(s)	1075
Eco130I	CCWWGG	2 cut(s)	66, 1088
Eco24I	GRGCYC	1 cut(s)	1077
Eco53kI	GAGCTC	1 cut(s)	1075
Eco57I	CTGAAG	2 cut(s)	787, 1067
Eco91I	GGTNACC	1 cut(s)	477
EcoICRI	GAGCTC	1 cut(s)	1075
EcoNI	CCTNNNNNAGG	1 cut(s)	802
EcoO65I	GGTNACC	1 cut(s)	477
EcoRII	CCWGG	4 cut(s)	473, 517, 614, 696
EcoT14I	CCWWGG	2 cut(s)	66, 1088
EcoT38I	GRGCYC	1 cut(s)	1077
ErhI	CCWWGG	2 cut(s)	66, 1088
FaeI	CATG	7 cut(s)	20, 266, 472, 742, 817, 907, 936
FaqI	GGGAC	2 cut(s)	175, 307
FatI	CATG	7 cut(s)	16, 262, 468, 738, 813, 903, 932
FauI	CCCGC	1 cut(s)	14
Fnu4HI	GCNGC	5 cut(s)	180, 211, 297, 363, 366
FokI	GGATG	1 cut(s)	632
FriOI	GRGCYC	1 cut(s)	1077
Fsp4HI	GCNGC	5 cut(s)	180, 211, 297, 363, 366
FspBI	CTAG	5 cut(s)	558, 716, 770, 846, 984
GlaI	GCGC	1 cut(s)	850
GluI	GCNGC	5 cut(s)	180, 211, 297, 363, 366
GsaI	CCCAGC	1 cut(s)	191
GsuI	CTGGAG	1 cut(s)	231
HaeIII	GGCC	3 cut(s)	305, 473, 937
HgaI	GACGC	2 cut(s)	523, 1061
HhaI	GCGC	1 cut(s)	851
Hin1I	GRCGYC	1 cut(s)	515
Hin1II	CATG	7 cut(s)	20, 266, 472, 742, 817, 907, 936
Hin6I	GCGC	1 cut(s)	849
HinP1I	GCGC	1 cut(s)	849
HinfI	GANTC	3 cut(s)	267, 465, 688
HphI	GGTGA	4 cut(s)	24, 203, 389, 471
Hpy188III	TCNNGA	5 cut(s)	76, 462, 890, 1095, 1123
HpyAV	CCTTC	5 cut(s)	335, 489, 667, 811, 1042
HpyCH4III	ACNGT	1 cut(s)	321
HpyCH4IV	ACGT	2 cut(s)	126, 834
HpyCH4V	TGCA	5 cut(s)	197, 221, 445, 903, 1065
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 62, 302, 514
HpySE526I	ACGT	2 cut(s)	126, 834
Hsp92I	GRCGYC	1 cut(s)	515
Hsp92II	CATG	7 cut(s)	20, 266, 472, 742, 817, 907, 936
HspAI	GCGC	1 cut(s)	849
Kzo9I	GATC	6 cut(s)	78, 611, 875, 916, 1097, 1139
Lsp1109I	GCAGC	3 cut(s)	191, 283, 377
LweI	GCATC	2 cut(s)	184, 1074
MaeI	CTAG	5 cut(s)	558, 716, 770, 846, 984
MaeII	ACGT	2 cut(s)	126, 834
MaeIII	GTNAC	2 cut(s)	155, 477
MalI	GATC	6 cut(s)	80, 613, 877, 918, 1099, 1141
MboI	GATC	6 cut(s)	78, 611, 875, 916, 1097, 1139
MboII	GAAGA	2 cut(s)	417, 697
MflI	RGATCY	3 cut(s)	78, 611, 916
MhlI	GDGCHC	1 cut(s)	1077
MlsI	TGGCCA	3 cut(s)	305, 473, 937
MluCI	AATT	8 cut(s)	96, 137, 173, 410, 540, 578, 951, 972
MluNI	TGGCCA	3 cut(s)	305, 473, 937
MmeI	TCCRAC	2 cut(s)	650, 685
Mox20I	TGGCCA	3 cut(s)	305, 473, 937
MscI	TGGCCA	3 cut(s)	305, 473, 937
MseI	TTAA	8 cut(s)	141, 597, 624, 660, 747, 809, 912, 1004
MslI	CAYNNNNRTG	1 cut(s)	1082
Msp20I	TGGCCA	3 cut(s)	305, 473, 937
MspR9I	CCNGG	4 cut(s)	475, 519, 616, 698
Mva1269I	GAATGC	2 cut(s)	258, 885
MvaI	CCWGG	4 cut(s)	475, 519, 616, 698
MvnI	CGCG	1 cut(s)	851
MwoI	GCNNNNNNNGC	4 cut(s)	10, 62, 302, 514
NdeII	GATC	6 cut(s)	78, 611, 875, 916, 1097, 1139
NlaIII	CATG	7 cut(s)	20, 266, 472, 742, 817, 907, 936
NlaIV	GGNNCC	2 cut(s)	613, 1086
NmeAIII	GCCGAG	1 cut(s)	546
NmuCI	GTSAC	2 cut(s)	155, 477
NspI	RCATGY	2 cut(s)	20, 907
PaeI	GCATGC	1 cut(s)	907
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PctI	GAATGC	2 cut(s)	258, 885
PfeI	GAWTC	3 cut(s)	267, 465, 688
Pfl23II	CGTACG	1 cut(s)	238
PflMI	CCANNNNNTGG	1 cut(s)	254
PkrI	GCNGC	5 cut(s)	181, 212, 298, 364, 367
Psp124BI	GAGCTC	1 cut(s)	1077
Psp6I	CCWGG	4 cut(s)	473, 517, 614, 696
PspEI	GGTNACC	1 cut(s)	477
PspFI	CCCAGC	1 cut(s)	187
PspGI	CCWGG	4 cut(s)	473, 517, 614, 696
PspLI	CGTACG	1 cut(s)	238
PspN4I	GGNNCC	2 cut(s)	613, 1086
PsrI	GAACNNNNNNTAC	2 cut(s)	222, 254
PstI	CTGCAG	1 cut(s)	223
PsuI	RGATCY	3 cut(s)	78, 611, 916
RsaI	GTAC	3 cut(s)	227, 240, 318
RsaNI	GTAC	3 cut(s)	226, 239, 317
RseI	CAYNNNNRTG	1 cut(s)	1082
SacI	GAGCTC	1 cut(s)	1077
SaqAI	TTAA	8 cut(s)	141, 597, 624, 660, 747, 809, 912, 1004
SatI	GCNGC	5 cut(s)	180, 211, 297, 363, 366
Sau3AI	GATC	6 cut(s)	78, 611, 875, 916, 1097, 1139
ScrFI	CCNGG	4 cut(s)	475, 519, 616, 698
SduI	GDGCHC	1 cut(s)	1077
SfaNI	GCATC	2 cut(s)	184, 1074
SfcI	CTRYAG	1 cut(s)	219
SmiMI	CAYNNNNRTG	1 cut(s)	1082
SphI	GCATGC	1 cut(s)	907
Sse9I	AATT	8 cut(s)	96, 137, 173, 410, 540, 578, 951, 972
SsiI	CCGC	6 cut(s)	7, 20, 210, 360, 363, 1132
SspMI	CTAG	5 cut(s)	558, 716, 770, 846, 984
SstI	GAGCTC	1 cut(s)	1077
StyD4I	CCNGG	4 cut(s)	473, 517, 614, 696
StyI	CCWWGG	2 cut(s)	66, 1088
TaaI	ACNGT	1 cut(s)	321
TaiI	ACGT	2 cut(s)	129, 837
TaqI	TCGA	2 cut(s)	119, 461
TasI	AATT	8 cut(s)	96, 137, 173, 410, 540, 578, 951, 972
TatI	WGTACW	1 cut(s)	316
TauI	GCSGC	2 cut(s)	213, 365
TfiI	GAWTC	3 cut(s)	267, 465, 688
Tru1I	TTAA	8 cut(s)	141, 597, 624, 660, 747, 809, 912, 1004
Tru9I	TTAA	8 cut(s)	141, 597, 624, 660, 747, 809, 912, 1004
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	2 cut(s)	155, 477
TseI	GCWGC	3 cut(s)	179, 296, 365
Tsp45I	GTSAC	2 cut(s)	155, 477
TspDTI	ATGAA	3 cut(s)	251, 457, 1130
TspGWI	ACGGA	1 cut(s)	909
TspRI	CASTG	1 cut(s)	298
Van91I	CCANNNNNTGG	1 cut(s)	254
XagI	CCTNNNNNAGG	1 cut(s)	802
XapI	RAATTY	2 cut(s)	137, 410
XceI	RCATGY	2 cut(s)	20, 907
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XspI	CTAG	5 cut(s)	558, 716, 770, 846, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.