Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0016918

Physical Location & Seq

Genomic Coordinates Forward (+)

7988026 .. 7988816

Gene Structure 791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g11800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGCTGATGTACAAACATGAGGGTCCTTCTCCTAAAGCCCTAATAAATTTGCAGTTGGAAGGGCTCCCATTGGCTCTCTCCACCTATATATTCAACGCTATTCACTTCCTCAGCCGTAGCTGCATTTTCGCAAGAATCATGGCCGGCTCACCTCCATTTCCCAGACGGTTTTTCAAGCCTTTGATTCCCGGCTTCGAATACGCAATCATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

72

Amino Acids

8.07

Weight (kDa)

9.43

Isoelectric Point (pI)

65.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016918)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12210 FvH4_7g12260 FvH4_7g12260 FvH4_7g12260
malus_domestica	MD00G1162200.v1.1 MD15G1130900.v1.1
prunus_persica	Prupe.1G388300_v2.0.a1 Prupe.1G489700_v2.0.a1 Prupe.1G489700_v2.0.a1 Prupe.1G489700_v2.0.a1 Prupe.1G517200_v2.0.a1 Prupe.1G519100_v2.0.a1
pyrus_communis	pycom15g11800 pycom15g33150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	46
AfaI	GTAC	1 cut(s)	11
AgsI	TTSAA	2 cut(s)	94, 175
AluBI	AGCT	1 cut(s)	120
AluI	AGCT	1 cut(s)	120
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	120
ApoI	RAATTY	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	23
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	1 cut(s)	141
AsuII	TTCGAA	1 cut(s)	195
AvaII	GGWCC	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	66
BbvCI	CCTCAGC	1 cut(s)	110
BbvI	GCAGC	1 cut(s)	107
BceAI	ACGGC	1 cut(s)	99
BcnI	CCSGG	1 cut(s)	189
BisI	GCNGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	122
Bme1390I	CCNGG	1 cut(s)	189
Bme18I	GGWCC	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	2 cut(s)	24, 65
BmrFI	CCNGG	1 cut(s)	189
Bpu10I	CCTNAGC	1 cut(s)	110
Bpu14I	TTCGAA	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	189
Bse118I	RCCGGY	1 cut(s)	143
BseMII	CTCAG	1 cut(s)	124
BseXI	GCAGC	1 cut(s)	107
BshFI	GGCC	1 cut(s)	143
BsiSI	CCGG	2 cut(s)	144, 189
BsnI	GGCC	1 cut(s)	143
Bsp119I	TTCGAA	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp1407I	TGTACA	1 cut(s)	9
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	24, 65
BspT104I	TTCGAA	1 cut(s)	195
BsrFI	RCCGGY	1 cut(s)	143
BsrGI	TGTACA	1 cut(s)	9
BssAI	RCCGGY	1 cut(s)	143
Bst4CI	ACNGT	1 cut(s)	168
BstAUI	TGTACA	1 cut(s)	9
BstBI	TTCGAA	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	1 cut(s)	110
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstSCI	CCNGG	1 cut(s)	187
BstV1I	GCAGC	1 cut(s)	107
BsuRI	GGCC	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	145
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	2 cut(s)	17, 139
CviJI	RGCY	9 cut(s)	38, 64, 74, 114, 120, 143, 147, 178, 192
CviKI_1	RGCY	9 cut(s)	38, 64, 74, 114, 120, 143, 147, 178, 192
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	1 cut(s)	110
EaeI	YGGCCR	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	23
EcoT38I	GRGCYC	1 cut(s)	66
FaeI	CATG	2 cut(s)	20, 142
FaiI	YATR	4 cut(s)	18, 87, 89, 140
FatI	CATG	2 cut(s)	16, 138
Fnu4HI	GCNGC	1 cut(s)	121
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	121
GluI	GCNGC	1 cut(s)	121
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	2 cut(s)	144, 189
Hin1II	CATG	2 cut(s)	20, 142
HinfI	GANTC	2 cut(s)	135, 184
HpaII	CCGG	2 cut(s)	144, 189
HphI	GGTGA	1 cut(s)	141
HpyAV	CCTTC	2 cut(s)	36, 53
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4V	TGCA	2 cut(s)	52, 123
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpyF3I	CTNAG	1 cut(s)	110
Hsp92II	CATG	2 cut(s)	20, 142
KroI	GCCGGC	1 cut(s)	143
KroNI	GCCGGC	1 cut(s)	145
LmnI	GCTCC	1 cut(s)	69
LpnPI	CCDG	3 cut(s)	157, 175, 202
Lsp1109I	GCAGC	1 cut(s)	107
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	1 cut(s)	46
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	3 cut(s)	13, 119, 162
MroNI	GCCGGC	1 cut(s)	143
MspI	CCGG	2 cut(s)	144, 189
MspR9I	CCNGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	120
NaeI	GCCGGC	1 cut(s)	145
NciI	CCSGG	1 cut(s)	189
NgoMIV	GCCGGC	1 cut(s)	143
NlaIII	CATG	2 cut(s)	20, 142
NlaIV	GGNNCC	2 cut(s)	24, 65
NspV	TTCGAA	1 cut(s)	195
PdiI	GCCGGC	1 cut(s)	145
PfeI	GAWTC	2 cut(s)	135, 184
PkrI	GCNGC	1 cut(s)	122
PpuMI	RGGWCCY	1 cut(s)	23
Psp5II	RGGWCCY	1 cut(s)	23
PspN4I	GGNNCC	2 cut(s)	24, 65
PspPI	GGNCC	1 cut(s)	23
PspPPI	RGGWCCY	1 cut(s)	23
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SatI	GCNGC	1 cut(s)	121
Sau96I	GGNCC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	3 cut(s)	86, 122, 154
SfuI	TTCGAA	1 cut(s)	195
SgeI	CNNG	8 cut(s)	29, 144, 151, 156, 174, 187, 200, 201
SinI	GGWCC	1 cut(s)	23
Sse9I	AATT	1 cut(s)	46
StyD4I	CCNGG	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	168
TaqI	TCGA	1 cut(s)	195
TasI	AATT	1 cut(s)	46
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	2 cut(s)	135, 184
TseI	GCWGC	1 cut(s)	120
VpaK11BI	GGWCC	1 cut(s)	23
XapI	RAATTY	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.