Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016918

Physical Location & Seq

Genomic Coordinates Forward (+)

40765805 .. 40770112

Gene Structure 4308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G489700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCTGGGTTAACTCCACCTCCCAGAAAGTTTATAAAGTTTTTGGCTCCTGGGCTCCATGAAAAACTTTCAATTCCAGTAGTGTTTTCTAGAAGTCTCCATGAAAAGAATGAAGCACTTCTGAAAAGCTGTCAGGGATATTGGCCTATTAAAGTTCGTAAGCATGGGGATGGATTGCTTTACTTCGAAGGTGGTGGTTGGAAAGAACTTGTGGAGCAGCATGGGTTGGAACTTGGAGAATTTTTGGTCTTGAAGCACCAAGGGATTAAACTTTTGCTGGTTTTGTTGATGTTTTCTGATTTTGAACAGTGTGACCAAGCATGTGTTTTCATCATTGATGTTTATATTATATTTTATTTTATTTTCAGACAATGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

127

Amino Acids

14.59

Weight (kDa)

7.7

Isoelectric Point (pI)

25.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016918)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12210 FvH4_7g12260 FvH4_7g12260 FvH4_7g12260
malus_domestica	MD00G1162200.v1.1 MD15G1130900.v1.1
prunus_persica	Prupe.1G388300_v2.0.a1 Prupe.1G489700_v2.0.a1 Prupe.1G489700_v2.0.a1 Prupe.1G489700_v2.0.a1 Prupe.1G517200_v2.0.a1 Prupe.1G519100_v2.0.a1
pyrus_communis	pycom15g11800 pycom15g33150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	239
AgsI	TTSAA	3 cut(s)	72, 253, 305
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	1 cut(s)	129
AluI	AGCT	1 cut(s)	129
Alw26I	GTCTC	1 cut(s)	101
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	1 cut(s)	217
ApoI	RAATTY	1 cut(s)	239
Asp700I	GAANNNNTTC	1 cut(s)	117
AsuII	TTCGAA	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	1 cut(s)	164
BciT130I	CCWGG	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	1 cut(s)	90
BisI	GCNGC	1 cut(s)	218
BlsI	GCNGC	1 cut(s)	219
Bme1390I	CCNGG	1 cut(s)	51
BmiI	GGNNCC	2 cut(s)	48, 56
BmrFI	CCNGG	1 cut(s)	51
Bpu14I	TTCGAA	1 cut(s)	186
BsaJI	CCNNGG	2 cut(s)	50, 259
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	2 cut(s)	50, 259
BseGI	GGATG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	229
BseYI	CCCAGC	1 cut(s)	5
BshFI	GGCC	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	145
Bsp119I	TTCGAA	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	57
BspANI	GGCC	1 cut(s)	145
BspLI	GGNNCC	2 cut(s)	48, 56
BspT104I	TTCGAA	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	2 cut(s)	50, 259
BssT1I	CCWWGG	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	309
BstBI	TTCGAA	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	175
BstMAI	GTCTC	1 cut(s)	101
BstNI	CCWGG	1 cut(s)	51
BstNSI	RCATGY	1 cut(s)	324
BstSCI	CCNGG	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	314
CviAII	CATG	5 cut(s)	59, 101, 164, 221, 321
CviJI	RGCY	5 cut(s)	5, 47, 55, 129, 145
CviKI_1	RGCY	5 cut(s)	5, 47, 55, 129, 145
Eco130I	CCWWGG	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	5 cut(s)	62, 104, 167, 224, 324
FaiI	YATR	8 cut(s)	35, 60, 102, 165, 222, 322, 345, 350
FatI	CATG	5 cut(s)	58, 100, 163, 220, 320
Fnu4HI	GCNGC	1 cut(s)	218
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	218
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	1 cut(s)	218
GsaI	CCCAGC	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	145
Hin1II	CATG	5 cut(s)	62, 104, 167, 224, 324
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HpaI	GTTAAC	1 cut(s)	12
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	3 cut(s)	123, 298, 368
Hpy188III	TCNNGA	2 cut(s)	90, 250
Hpy8I	GTNNAC	1 cut(s)	12
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	1 cut(s)	309
Hsp92II	CATG	5 cut(s)	62, 104, 167, 224, 324
KspAI	GTTAAC	1 cut(s)	12
LmnI	GCTCC	3 cut(s)	52, 60, 214
LpnPI	CCDG	6 cut(s)	36, 37, 63, 90, 119, 263
Lsp1109I	GCAGC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	311
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	2 cut(s)	72, 239
MmeI	TCCRAC	2 cut(s)	179, 207
MnlI	CCTC	1 cut(s)	30
MroXI	GAANNNNTTC	1 cut(s)	117
MseI	TTAA	4 cut(s)	11, 150, 267, 379
MslI	CAYNNNNRTG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
NlaIII	CATG	5 cut(s)	62, 104, 167, 224, 324
NlaIV	GGNNCC	2 cut(s)	48, 56
NmuCI	GTSAC	1 cut(s)	311
NspI	RCATGY	1 cut(s)	324
NspV	TTCGAA	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	219
PsiI	TTATAA	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	49
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	2 cut(s)	48, 56
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	4 cut(s)	11, 150, 267, 379
SatI	GCNGC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	3 cut(s)	22, 131, 193
SfuI	TTCGAA	1 cut(s)	186
SmiMI	CAYNNNNRTG	1 cut(s)	168
Sse9I	AATT	2 cut(s)	72, 239
SspMI	CTAG	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	49
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	1 cut(s)	309
TaqI	TCGA	1 cut(s)	186
TasI	AATT	2 cut(s)	72, 239
Tru1I	TTAA	4 cut(s)	11, 150, 267, 379
Tru9I	TTAA	4 cut(s)	11, 150, 267, 379
TscAI	CASTG	1 cut(s)	314
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	4 cut(s)	75, 117, 126, 319
TspRI	CASTG	1 cut(s)	314
XapI	RAATTY	1 cut(s)	239
XbaI	TCTAGA	1 cut(s)	89
XceI	RCATGY	1 cut(s)	324
XmnI	GAANNNNTTC	1 cut(s)	117
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.