Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0016918

Physical Location & Seq

Genomic Coordinates Forward (+)

9464244 .. 9465119

Gene Structure 876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1130900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAAGAAAGCGGTTATTGAAAGCTGCCAGGGATCATGGCAAGTTGGAGTTGCTAGGACTGGGGATGGAACCCTCTATTTTGAAGGCGGTTGGGAAGAGTTTGTGAAGTATCACAACCTGAAAGTCGGAGACTTTCTTGTGTTCAAACACCTAGGCCGCATGGTTTTCCATGTCAACGTGTATGAGCCACTCGGTTGCGAGAAAGCGTTTCCTCCTCCTCCTCCTCCTGCTGCTGCTGCCGCCGCTGCAACATCAACCTCGAGTCCTCTGTTCTTCCTCAAAAGCATTTCGGAAACTCATTCTCTACCCAGCAAGTGTTACGTGACTATTCCGTCGGAATTTGTGAAAGCCCATGGCCTTGGTGACAGAAAGAAAATGATCCTCAAAGTTCGGTTTGTTGGAGGAAAATGGCCGGTGGAACTTGGAACTTGGCAAGGCGGAAGGAGAGGTGCAGCCATTAGTCTTCGCACCGCAATAAGAACGAGAGGATGGTACAAGTTTTACGAGGACAACAGGCTCAAGATTGGAGATTGCTGCAAGTTTGTGCTGAAGGAGGTGCCGGATTCAAAATCGAAGCCTGTGATAATGGAGGTCGACATAAAACGCATGGTCCTTAGGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

208

Amino Acids

23.17

Weight (kDa)

9.64

Isoelectric Point (pI)

35.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	12 - 60	8.5e-11	B3 DNA binding domain
B3	PF02362	99 - 186	3.9e-10	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0016918)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12210 FvH4_7g12260 FvH4_7g12260 FvH4_7g12260
malus_domestica	MD00G1162200.v1.1 MD15G1130900.v1.1
prunus_persica	Prupe.1G388300_v2.0.a1 Prupe.1G489700_v2.0.a1 Prupe.1G489700_v2.0.a1 Prupe.1G489700_v2.0.a1 Prupe.1G517200_v2.0.a1 Prupe.1G519100_v2.0.a1
pyrus_communis	pycom15g11800 pycom15g33150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	331
AccB1I	GGYRCC	1 cut(s)	556
AccI	GTMKAC	1 cut(s)	594
AciI	CCGC	7 cut(s)	11, 87, 157, 240, 243, 438, 471
AclWI	GGATC	2 cut(s)	40, 373
AcoI	YGGCCR	1 cut(s)	410
AcsI	RAATTY	1 cut(s)	338
AcuI	CTGAAG	1 cut(s)	569
AfaI	GTAC	1 cut(s)	494
AflIII	ACRYGT	1 cut(s)	177
AgsI	TTSAA	4 cut(s)	20, 83, 145, 567
AjnI	CCWGG	1 cut(s)	27
AluBI	AGCT	1 cut(s)	24
AluI	AGCT	1 cut(s)	24
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	2 cut(s)	40, 373
Ama87I	CYCGRG	1 cut(s)	259
AoxI	GGCC	3 cut(s)	154, 355, 410
ApeKI	GCWGC	7 cut(s)	24, 230, 233, 236, 245, 452, 534
ApoI	RAATTY	1 cut(s)	338
AspA2I	CCTAGG	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	610
AsuHPI	GGTGA	1 cut(s)	374
AvaI	CYCGRG	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	610
AvrII	CCTAGG	1 cut(s)	151
AxyI	CCTNAGG	1 cut(s)	614
BanI	GGYRCC	1 cut(s)	556
BbsI	GAAGAC	1 cut(s)	455
BbvI	GCAGC	7 cut(s)	11, 217, 220, 223, 232, 464, 521
BccI	CCATC	2 cut(s)	59, 483
BciT130I	CCWGG	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	2 cut(s)	54, 152
BlnI	CCTAGG	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	29
Bme18I	GGWCC	1 cut(s)	610
BmeT110I	CYCGRG	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	610
BmiI	GGNNCC	2 cut(s)	70, 558
BmrFI	CCNGG	1 cut(s)	29
BmrI	ACTGGG	1 cut(s)	69
BmuI	ACTGGG	1 cut(s)	69
BpiI	GAAGAC	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	503
BsaAI	YACGTR	1 cut(s)	322
BsaJI	CCNNGG	4 cut(s)	28, 151, 352, 358
Bse118I	RCCGGY	1 cut(s)	412
Bse1I	ACTGG	1 cut(s)	64
Bse21I	CCTNAGG	1 cut(s)	614
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	4 cut(s)	28, 151, 352, 358
BseGI	GGATG	2 cut(s)	70, 494
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	4 cut(s)	204, 207, 210, 213
BseXI	GCAGC	7 cut(s)	11, 217, 220, 223, 232, 464, 521
BseYI	CCCAGC	1 cut(s)	308
BsgI	GTGCAG	1 cut(s)	471
BshFI	GGCC	3 cut(s)	156, 357, 412
BshNI	GGYRCC	1 cut(s)	556
BsiHKCI	CYCGRG	1 cut(s)	259
BsiSI	CCGG	2 cut(s)	413, 560
BsmAI	GTCTC	1 cut(s)	123
BsnI	GGCC	3 cut(s)	156, 357, 412
BsoBI	CYCGRG	1 cut(s)	259
Bsp143I	GATC	2 cut(s)	32, 378
Bsp19I	CCATGG	1 cut(s)	352
BspACI	CCGC	7 cut(s)	11, 87, 157, 240, 243, 438, 471
BspANI	GGCC	3 cut(s)	156, 357, 412
BspLI	GGNNCC	2 cut(s)	70, 558
BspPI	GGATC	2 cut(s)	40, 373
BspT107I	GGYRCC	1 cut(s)	556
BsrFI	RCCGGY	1 cut(s)	412
BsrI	ACTGG	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	412
BssECI	CCNNGG	4 cut(s)	28, 151, 352, 358
BssMI	GATC	2 cut(s)	32, 378
BssT1I	CCWWGG	3 cut(s)	151, 352, 358
Bst2UI	CCWGG	1 cut(s)	29
Bst6I	CTCTTC	1 cut(s)	90
BstBAI	YACGTR	1 cut(s)	322
BstDEI	CTNAG	1 cut(s)	614
BstDSI	CCRYGG	1 cut(s)	352
BstF5I	GGATG	2 cut(s)	70, 494
BstKTI	GATC	2 cut(s)	35, 381
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	2 cut(s)	32, 378
BstMWI	GCNNNNNNNGC	4 cut(s)	236, 239, 242, 245
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	27
BstV1I	GCAGC	7 cut(s)	11, 217, 220, 223, 232, 464, 521
BstV2I	GAAGAC	1 cut(s)	455
BstXI	CCANNNNNNTGG	1 cut(s)	359
Bsu36I	CCTNAGG	1 cut(s)	614
BsuRI	GGCC	3 cut(s)	156, 357, 412
BtgI	CCRYGG	1 cut(s)	352
BtsCI	GGATG	2 cut(s)	70, 494
Cfr10I	RCCGGY	1 cut(s)	412
Cfr13I	GGNCC	1 cut(s)	610
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	5 cut(s)	36, 160, 170, 353, 607
CviJI	RGCY	9 cut(s)	24, 156, 187, 350, 357, 412, 455, 517, 577
CviKI_1	RGCY	9 cut(s)	24, 156, 187, 350, 357, 412, 455, 517, 577
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	1 cut(s)	614
DpnI	GATC	2 cut(s)	34, 380
DpnII	GATC	2 cut(s)	32, 378
DrdI	GACNNNNNNGTC	1 cut(s)	331
DseDI	GACNNNNNNGTC	1 cut(s)	331
EaeI	YGGCCR	1 cut(s)	410
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
EciI	GGCGGA	1 cut(s)	453
Eco130I	CCWWGG	3 cut(s)	151, 352, 358
Eco47I	GGWCC	1 cut(s)	610
Eco57I	CTGAAG	1 cut(s)	569
Eco81I	CCTNAGG	1 cut(s)	614
Eco88I	CYCGRG	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	27
EcoT14I	CCWWGG	3 cut(s)	151, 352, 358
ErhI	CCWWGG	3 cut(s)	151, 352, 358
FaeI	CATG	5 cut(s)	39, 163, 173, 356, 610
FaiI	YATR	7 cut(s)	37, 161, 171, 183, 354, 599, 608
FatI	CATG	5 cut(s)	35, 159, 169, 352, 606
FblI	GTMKAC	1 cut(s)	594
FokI	GGATG	2 cut(s)	77, 501
FspBI	CTAG	2 cut(s)	54, 152
GsaI	CCCAGC	1 cut(s)	312
HaeIII	GGCC	3 cut(s)	156, 357, 412
HapII	CCGG	2 cut(s)	413, 560
Hin1II	CATG	5 cut(s)	39, 163, 173, 356, 610
HincII	GTYRAC	2 cut(s)	175, 595
HindII	GTYRAC	2 cut(s)	175, 595
HinfI	GANTC	2 cut(s)	262, 563
HpaII	CCGG	2 cut(s)	413, 560
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	2 cut(s)	175, 595
Hpy188I	TCNGA	3 cut(s)	128, 292, 337
Hpy188III	TCNNGA	1 cut(s)	520
Hpy8I	GTNNAC	2 cut(s)	175, 595
Hpy99I	CGWCG	1 cut(s)	337
HpyAV	CCTTC	3 cut(s)	77, 435, 544
HpyCH4IV	ACGT	2 cut(s)	177, 321
HpyCH4V	TGCA	3 cut(s)	248, 452, 537
HpyF10VI	GCNNNNNNNGC	4 cut(s)	236, 239, 242, 245
HpyF3I	CTNAG	1 cut(s)	614
HpySE526I	ACGT	2 cut(s)	177, 321
Hsp92II	CATG	5 cut(s)	39, 163, 173, 356, 610
Kzo9I	GATC	2 cut(s)	32, 378
Lsp1109I	GCAGC	7 cut(s)	11, 217, 220, 223, 232, 464, 521
MaeI	CTAG	2 cut(s)	54, 152
MaeII	ACGT	2 cut(s)	177, 321
MaeIII	GTNAC	3 cut(s)	317, 322, 362
MalI	GATC	2 cut(s)	34, 380
MboI	GATC	2 cut(s)	32, 378
MboII	GAAGA	4 cut(s)	16, 107, 265, 455
MluCI	AATT	1 cut(s)	338
MlyI	GAGTC	1 cut(s)	271
MmeI	TCCRAC	4 cut(s)	25, 106, 315, 379
MseI	TTAA	1 cut(s)	622
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	2 cut(s)	413, 560
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	4 cut(s)	236, 239, 242, 245
NcoI	CCATGG	1 cut(s)	352
NdeII	GATC	2 cut(s)	32, 378
NlaIII	CATG	5 cut(s)	39, 163, 173, 356, 610
NlaIV	GGNNCC	2 cut(s)	70, 558
NmuCI	GTSAC	2 cut(s)	322, 362
PaeR7I	CTCGAG	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	563
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
Ppu21I	YACGTR	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	27
PspFI	CCCAGC	1 cut(s)	308
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	70, 558
PspPI	GGNCC	1 cut(s)	610
PspXI	VCTCGAGB	1 cut(s)	259
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
SalI	GTCGAC	1 cut(s)	593
SaqAI	TTAA	1 cut(s)	622
Sau3AI	GATC	2 cut(s)	32, 378
Sau96I	GGNCC	1 cut(s)	610
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	29
SetI	ASST	9 cut(s)	26, 120, 153, 180, 260, 324, 451, 558, 594
Sfr274I	CTCGAG	1 cut(s)	259
SinI	GGWCC	1 cut(s)	610
SlaI	CTCGAG	1 cut(s)	259
SmlI	CTYRAG	2 cut(s)	259, 518
SmoI	CTYRAG	2 cut(s)	259, 518
Sse9I	AATT	1 cut(s)	338
SsiI	CCGC	7 cut(s)	11, 87, 157, 240, 243, 438, 471
SspMI	CTAG	2 cut(s)	54, 152
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	3 cut(s)	151, 352, 358
TaiI	ACGT	2 cut(s)	180, 324
TaqI	TCGA	3 cut(s)	260, 572, 594
TasI	AATT	1 cut(s)	338
TauI	GCSGC	3 cut(s)	159, 242, 245
TfiI	GAWTC	1 cut(s)	563
Tru1I	TTAA	1 cut(s)	622
Tru9I	TTAA	1 cut(s)	622
TseFI	GTSAC	2 cut(s)	322, 362
TseI	GCWGC	7 cut(s)	24, 230, 233, 236, 245, 452, 534
Tsp45I	GTSAC	2 cut(s)	322, 362
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	321
VpaK11BI	GGWCC	1 cut(s)	610
XapI	RAATTY	1 cut(s)	338
XhoI	CTCGAG	1 cut(s)	259
XmaJI	CCTAGG	1 cut(s)	151
XmiI	GTMKAC	1 cut(s)	594
XspI	CTAG	2 cut(s)	54, 152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.