FvH4_7g12470

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0017359
Physical Location & Seq
Forward (+)
11308149 .. 11309478
1330 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12470.t1

Sequence Viewer

Length: 621 bp
ATGGCGAATCTGACCGCCATTACCCTCCTCCTCCTCACCACCATCGCCGCCTCCTCCGCCGCCCCAGCTCCCGCCCCCGCCACCACGTACATCAACCACACCGTCGGCGGGCTCATCGGCTGGTTCTTCAACTCCACCTCCAACACTTCCTTCACTAACTACTCCTCCTGGGCTGCCTCCCAGACCTTCAATCTCGGCGACTATCTCGTTTTCAACACGGAGAATCAGACGGTGATTGAGACCCAGAACGCGACGGCGTACCGTCTCTGTACGGCGGACGACACGTCGGACGAGTCCACTTTCGTCTGGGGGGACGACACTCTGGGGAAGATGACCATTGTGGTGCCGTTGGTGACCGAGGGTGCTAACTACTACTTCTCCGACAACGGCGACGGCGAGCAATGCCAGCAAGGCATGGCCTTCGCTATCGAAGTCCAACACGGCCTCGGCTTGCCGCCGATTCTCAACCAGCCTCCGCCTCCGCCGTACACGCCGCCGCCGGCTTTGTCGCCGCCTGGATCCGTCGACGGGACTCAGTCATCGGGGAATGGTGGATTTAGGAGCGGCGCTAGTTTGAGCGGCGGGTTATTGGTTGCGTTTATGGTGATTCTCAATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

207

Amino Acids

21.56

Weight (kDa)

4.05

Isoelectric Point (pI)

41.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 49 - 139 5.3e-14 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017359)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12470
malus_domestica MD02G1199000.v1.1
prunus_persica Prupe.2G149300_v2.0.a1
pyrus_communis pycom02g16300
rosa_chinensis RchiOBHm_Chr1g0351281
rosa_laevigata RLG00000028418
rosa_roxburghii Rroxscaffold_4G00303910
rosa_rugosa Rorug01G0217500
rosa_samantha Rh1AG231900 Rh1BG202100 Rh1CG216600 Rh1DG229400
rosa_wichuraiana Rw1G020190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 343
AccBSI CCGCTC 2 cut(s) 564, 579
AccI GTMKAC 1 cut(s) 525
AccII CGCG 1 cut(s) 251
AclWI GGATC 2 cut(s) 513, 526
AfaI GTAC 4 cut(s) 89, 260, 271, 488
AfiI CCNNNNNNNGG 2 cut(s) 108, 528
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 3 cut(s) 130, 190, 214
AhdI GACNNNNNGTC 1 cut(s) 283
AjiI CACGTC 1 cut(s) 285
AjnI CCWGG 2 cut(s) 167, 514
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw26I GTCTC 2 cut(s) 233, 269
AlwI GGATC 2 cut(s) 513, 526
AoxI GGCC 2 cut(s) 417, 442
ApeKI GCWGC 1 cut(s) 173
AspLEI GCGC 1 cut(s) 569
AsuHPI GGTGA 4 cut(s) 28, 244, 364, 616
BamHI GGATCC 1 cut(s) 518
BanI GGYRCC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 160
BccI CCATC 1 cut(s) 50
BceAI ACGGC 7 cut(s) 270, 288, 331, 403, 409, 457, 469
BcgI CGANNNNNNTGC 2 cut(s) 403, 437
BciT130I CCWGG 2 cut(s) 169, 516
BcoDI GTCTC 2 cut(s) 233, 269
BfaI CTAG 1 cut(s) 570
BfoI RGCGCY 1 cut(s) 570
BglI GCCNNNNNGGC 1 cut(s) 411
BisI GCNGC 9 cut(s) 48, 60, 174, 455, 494, 497, 512, 565, 580
BlsI GCNGC 9 cut(s) 49, 61, 175, 456, 495, 498, 513, 566, 581
Bme1390I CCNGG 2 cut(s) 169, 516
BmeRI GACNNNNNGTC 1 cut(s) 283
BmgBI CACGTC 1 cut(s) 285
BmiI GGNNCC 2 cut(s) 345, 520
BmrFI CCNGG 2 cut(s) 169, 516
BsaAI YACGTR 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 233
BsaJI CCNNGG 3 cut(s) 168, 357, 445
BsaXI ACNNNNNCTCC 6 cut(s) 122, 149, 152, 179, 362, 392
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 528
Bse118I RCCGGY 1 cut(s) 499
Bse3DI GCAATG 1 cut(s) 407
BseBI CCWGG 2 cut(s) 169, 516
BseDI CCNNGG 3 cut(s) 168, 357, 445
BseLI CCNNNNNNNGG 2 cut(s) 108, 528
BseMI GCAATG 1 cut(s) 407
BseMII CTCAG 1 cut(s) 548
BseRI GAGGAG 5 cut(s) 17, 20, 23, 43, 154
BseXI GCAGC 1 cut(s) 160
BseYI CCCAGC 1 cut(s) 64
Bsh1236I CGCG 1 cut(s) 251
BshFI GGCC 2 cut(s) 419, 444
BshNI GGYRCC 1 cut(s) 343
BsiSI CCGG 1 cut(s) 500
BslFI GGGAC 2 cut(s) 326, 544
BslI CCNNNNNNNGG 2 cut(s) 108, 528
BsmAI GTCTC 2 cut(s) 233, 269
BsmBI CGTCTC 1 cut(s) 269
BsmFI GGGAC 2 cut(s) 326, 544
BsnI GGCC 2 cut(s) 419, 444
Bso31I GGTCTC 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 1 cut(s) 518
BspANI GGCC 2 cut(s) 419, 444
BspCNI CTCAG 1 cut(s) 547
BspFNI CGCG 1 cut(s) 251
BspLI GGNNCC 2 cut(s) 345, 520
BspPI GGATC 2 cut(s) 513, 526
BspT107I GGYRCC 1 cut(s) 343
BspTNI GGTCTC 1 cut(s) 233
BsrBI CCGCTC 2 cut(s) 564, 579
BsrDI GCAATG 1 cut(s) 407
BsrFI RCCGGY 1 cut(s) 499
BssAI RCCGGY 1 cut(s) 499
BssECI CCNNGG 3 cut(s) 168, 357, 445
BssMI GATC 1 cut(s) 518
Bst2UI CCWGG 2 cut(s) 169, 516
Bst4CI ACNGT 3 cut(s) 103, 232, 263
BstBAI YACGTR 1 cut(s) 87
BstC8I GCNNGC 5 cut(s) 110, 398, 407, 452, 501
BstDEI CTNAG 1 cut(s) 534
BstEII GGTNACC 1 cut(s) 352
BstFNI CGCG 1 cut(s) 251
BstH2I RGCGCY 1 cut(s) 570
BstHHI GCGC 1 cut(s) 569
BstKTI GATC 1 cut(s) 521
BstMAI GTCTC 2 cut(s) 233, 269
BstMBI GATC 1 cut(s) 518
BstMWI GCNNNNNNNGC 6 cut(s) 56, 65, 402, 406, 411, 490
BstNI CCWGG 2 cut(s) 169, 516
BstPI GGTNACC 1 cut(s) 352
BstSCI CCNGG 2 cut(s) 167, 514
BstUI CGCG 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 160
BstX2I RGATCY 1 cut(s) 518
BstYI RGATCY 1 cut(s) 518
BsuRI GGCC 2 cut(s) 419, 444
BtgZI GCGATG 1 cut(s) 28
BtrI CACGTC 1 cut(s) 285
Cac8I GCNNGC 5 cut(s) 110, 398, 407, 452, 501
CfoI GCGC 1 cut(s) 569
Cfr10I RCCGGY 1 cut(s) 499
Csp6I GTAC 4 cut(s) 88, 259, 270, 487
CviAII CATG 1 cut(s) 415
CviJI RGCY 9 cut(s) 68, 112, 120, 173, 419, 444, 450, 472, 503
CviKI_1 RGCY 9 cut(s) 68, 112, 120, 173, 419, 444, 450, 472, 503
CviQI GTAC 4 cut(s) 88, 259, 270, 487
DdeI CTNAG 1 cut(s) 534
DpnI GATC 1 cut(s) 520
DpnII GATC 1 cut(s) 518
DriI GACNNNNNGTC 1 cut(s) 283
Eam1105I GACNNNNNGTC 1 cut(s) 283
EciI GGCGGA 4 cut(s) 46, 290, 465, 471
Eco24I GRGCYC 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 233
Eco91I GGTNACC 1 cut(s) 352
EcoO65I GGTNACC 1 cut(s) 352
EcoRII CCWGG 2 cut(s) 167, 514
EcoT38I GRGCYC 1 cut(s) 114
Esp3I CGTCTC 1 cut(s) 269
FaeI CATG 1 cut(s) 418
FaiI YATR 2 cut(s) 416, 602
FaqI GGGAC 2 cut(s) 326, 544
FatI CATG 1 cut(s) 414
FauI CCCGC 4 cut(s) 79, 85, 101, 575
FblI GTMKAC 1 cut(s) 525
Fnu4HI GCNGC 9 cut(s) 48, 60, 174, 455, 494, 497, 512, 565, 580
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 9 cut(s) 48, 60, 174, 455, 494, 497, 512, 565, 580
FspBI CTAG 1 cut(s) 570
GlaI GCGC 1 cut(s) 568
GluI GCNGC 9 cut(s) 48, 60, 174, 455, 494, 497, 512, 565, 580
GsaI CCCAGC 1 cut(s) 68
HaeII RGCGCY 1 cut(s) 570
HaeIII GGCC 2 cut(s) 419, 444
HapII CCGG 1 cut(s) 500
HhaI GCGC 1 cut(s) 569
Hin1II CATG 1 cut(s) 418
Hin6I GCGC 1 cut(s) 567
HinP1I GCGC 1 cut(s) 567
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HinfI GANTC 6 cut(s) 7, 223, 293, 460, 532, 607
HpaII CCGG 1 cut(s) 500
HphI GGTGA 4 cut(s) 28, 244, 364, 616
Hpy166II GTNNAC 3 cut(s) 297, 489, 526
Hpy188I TCNGA 4 cut(s) 12, 228, 289, 382
Hpy8I GTNNAC 3 cut(s) 297, 489, 526
Hpy99I CGWCG 6 cut(s) 107, 256, 289, 395, 527, 530
HpyAV CCTTC 3 cut(s) 160, 196, 430
HpyCH4III ACNGT 3 cut(s) 103, 232, 263
HpyCH4IV ACGT 2 cut(s) 86, 284
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 65, 402, 406, 411, 490
HpyF3I CTNAG 1 cut(s) 534
HpySE526I ACGT 2 cut(s) 86, 284
Hsp92II CATG 1 cut(s) 418
HspAI GCGC 1 cut(s) 567
KroI GCCGGC 1 cut(s) 499
KroNI GCCGGC 1 cut(s) 501
Kzo9I GATC 1 cut(s) 518
LmnI GCTCC 2 cut(s) 73, 561
Lsp1109I GCAGC 1 cut(s) 160
MaeI CTAG 1 cut(s) 570
MaeII ACGT 2 cut(s) 86, 284
MaeIII GTNAC 1 cut(s) 352
MalI GATC 1 cut(s) 520
MbiI CCGCTC 2 cut(s) 564, 579
MboI GATC 1 cut(s) 518
MboII GAAGA 2 cut(s) 118, 340
MflI RGATCY 1 cut(s) 518
MhlI GDGCHC 1 cut(s) 114
MlyI GAGTC 2 cut(s) 302, 526
MmeI TCCRAC 4 cut(s) 165, 267, 405, 460
MroNI GCCGGC 1 cut(s) 499
MslI CAYNNNNRTG 1 cut(s) 341
MspI CCGG 1 cut(s) 500
MspR9I CCNGG 2 cut(s) 169, 516
MvaI CCWGG 2 cut(s) 169, 516
MvnI CGCG 1 cut(s) 251
MwoI GCNNNNNNNGC 6 cut(s) 56, 65, 402, 406, 411, 490
NaeI GCCGGC 1 cut(s) 501
NdeII GATC 1 cut(s) 518
NgoMIV GCCGGC 1 cut(s) 499
NlaIII CATG 1 cut(s) 418
NlaIV GGNNCC 2 cut(s) 345, 520
NmeAIII GCCGAG 2 cut(s) 174, 426
NmuCI GTSAC 1 cut(s) 352
PcsI WCGNNNNNNNCGW 1 cut(s) 393
PdiI GCCGGC 1 cut(s) 501
PfeI GAWTC 4 cut(s) 7, 223, 460, 607
PflFI GACNNNGTC 1 cut(s) 535
PkrI GCNGC 9 cut(s) 49, 61, 175, 456, 495, 498, 513, 566, 581
PleI GAGTC 2 cut(s) 301, 526
PpsI GAGTC 2 cut(s) 301, 526
Ppu21I YACGTR 1 cut(s) 87
Psp6I CCWGG 2 cut(s) 167, 514
PspEI GGTNACC 1 cut(s) 352
PspFI CCCAGC 1 cut(s) 64
PspGI CCWGG 2 cut(s) 167, 514
PspN4I GGNNCC 2 cut(s) 345, 520
PsuI RGATCY 1 cut(s) 518
PsyI GACNNNGTC 1 cut(s) 535
RsaI GTAC 4 cut(s) 89, 260, 271, 488
RsaNI GTAC 4 cut(s) 88, 259, 270, 487
RseI CAYNNNNRTG 1 cut(s) 341
SalI GTCGAC 1 cut(s) 524
SatI GCNGC 9 cut(s) 48, 60, 174, 455, 494, 497, 512, 565, 580
Sau3AI GATC 1 cut(s) 518
SchI GAGTC 2 cut(s) 302, 526
ScrFI CCNGG 2 cut(s) 169, 516
SduI GDGCHC 1 cut(s) 114
SetI ASST 5 cut(s) 70, 89, 140, 188, 287
SgrDI CGTCGACG 1 cut(s) 524
SmiMI CAYNNNNRTG 1 cut(s) 341
SspMI CTAG 1 cut(s) 570
StyD4I CCNGG 2 cut(s) 167, 514
TaaI ACNGT 3 cut(s) 103, 232, 263
TaiI ACGT 2 cut(s) 89, 287
TaqI TCGA 2 cut(s) 429, 525
TaqII GACCGA 1 cut(s) 371
TauI GCSGC 8 cut(s) 50, 62, 457, 496, 499, 514, 567, 582
TfiI GAWTC 4 cut(s) 7, 223, 460, 607
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 352
TspGWI ACGGA 2 cut(s) 233, 511
Tth111I GACNNNGTC 1 cut(s) 535
XmiI GTMKAC 1 cut(s) 525
XspI CTAG 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.