Rh1BG202100

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0017359
Physical Location & Seq
Forward (+)
31958181 .. 31959391
1211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG202100.1

Sequence Viewer

Length: 654 bp
ATGGCGGCCAGACCCATGGCCAATCTGACGGCCATTATCCTCCTCTTCCTCCTCTTCATCACCATCGCCGCCACTTCCGCTTCCCCGGCCCCGGCTCCGGTGGCACCTTCCGCCACCAAGTACATTAACCACACCGTGGGTGGGCCCATCGGGTGGTTCTTCAACTCCACCTCCAACACTTCCTTCATTAATTACTCCTCCTGGGCTGCCTCTCAGACCTTCAACCTCGGCGACTATCTCGTTTTCAACACTGAGAACCAGACGGTGATTGAGACCCAAAACGCGACGACATACCGTAGCTGCACAGCGGACGACACGTCGGACGAGACCACTTTCATCTGGGGGGATGATACTGCGGGGATGAAGACCATTGTGGTGCCATTGGTTACCGAGGGTGCCAACTACTACTTCTCCGGCAGCGGCGACGGCCAGCAGTGCCAGCAAGGCATGGCCTTCGCGATCGAAGTCAATCACGGCCTCGGCTTGCCGCCTATTCTCAATCAGCCTCCACCTCCGCCGTACACGGAGCCGCCGGCGCAGTCGCCGCCTGGAACTGTCGTCGGAACTCAGCCGTCGGGGAGTAGTGGGTTCAGAAGCGGCGCTAGTTTGAGCGGAGGGTTATTAGTTGCGTTTGTGCTGGTTCTCAATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

217

Amino Acids

22.73

Weight (kDa)

4.32

Isoelectric Point (pI)

49.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 60 - 150 1.9e-14 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017359)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12470
malus_domestica MD02G1199000.v1.1
prunus_persica Prupe.2G149300_v2.0.a1
pyrus_communis pycom02g16300
rosa_chinensis RchiOBHm_Chr1g0351281
rosa_laevigata RLG00000028418
rosa_roxburghii Rroxscaffold_4G00303910
rosa_rugosa Rorug01G0217500
rosa_samantha Rh1AG231900 Rh1BG202100 Rh1CG216600 Rh1DG229400
rosa_wichuraiana Rw1G020190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 103, 376, 395
AccB7I CCANNNNNTGG 2 cut(s) 136, 153
AccBSI CCGCTC 1 cut(s) 612
AccII CGCG 2 cut(s) 284, 458
AcoI YGGCCR 4 cut(s) 6, 18, 30, 427
AdeI CACNNNGTG 1 cut(s) 136
AfaI GTAC 2 cut(s) 122, 521
AfiI CCNNNNNNNGG 5 cut(s) 91, 97, 136, 141, 153
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 3 cut(s) 163, 223, 247
AhdI GACNNNNNGTC 1 cut(s) 316
AjiI CACGTC 1 cut(s) 318
AjnI CCWGG 2 cut(s) 200, 547
AjuI GAANNNNNNNTTGG 4 cut(s) 167, 199, 392, 424
AluBI AGCT 1 cut(s) 300
AluI AGCT 1 cut(s) 300
Alw26I GTCTC 2 cut(s) 266, 320
AoxI GGCC 8 cut(s) 6, 18, 30, 87, 143, 427, 450, 475
ApaI GGGCCC 1 cut(s) 147
ApeKI GCWGC 3 cut(s) 206, 300, 417
AseI ATTAAT 1 cut(s) 189
AspLEI GCGC 2 cut(s) 538, 602
AspS9I GGNCC 3 cut(s) 88, 143, 144
AsuC2I CCSGG 2 cut(s) 86, 92
AsuHPI GGTGA 2 cut(s) 52, 277
BaeGI GKGCMC 1 cut(s) 147
BalI TGGCCA 1 cut(s) 20
BanI GGYRCC 3 cut(s) 103, 376, 395
BanII GRGCYC 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 371
BbvI GCAGC 3 cut(s) 193, 287, 429
BccI CCATC 2 cut(s) 71, 155
BceAI ACGGC 5 cut(s) 45, 442, 490, 502, 556
BcgI CGANNNNNNTGC 2 cut(s) 436, 470
BciT130I CCWGG 2 cut(s) 202, 549
BcnI CCSGG 2 cut(s) 86, 92
BcoDI GTCTC 2 cut(s) 266, 320
BfaI CTAG 1 cut(s) 603
BfoI RGCGCY 1 cut(s) 603
BglI GCCNNNNNGGC 1 cut(s) 444
Bme1390I CCNGG 4 cut(s) 86, 92, 202, 549
BmeRI GACNNNNNGTC 1 cut(s) 316
BmgBI CACGTC 1 cut(s) 318
BmgT120I GGNCC 3 cut(s) 88, 143, 144
BmiI GGNNCC 7 cut(s) 90, 96, 105, 145, 378, 397, 528
BmrFI CCNGG 4 cut(s) 86, 92, 202, 549
BpiI GAAGAC 1 cut(s) 371
BpuMI CCSGG 2 cut(s) 86, 92
BsaI GGTCTC 2 cut(s) 266, 320
BsaJI CCNNGG 8 cut(s) 15, 84, 90, 135, 201, 226, 390, 478
BsaWI WCCGGW 1 cut(s) 97
BsaXI ACNNNNNCTCC 4 cut(s) 155, 185, 395, 425
Bsc4I CCNNNNNNNGG 5 cut(s) 91, 97, 136, 141, 153
Bse118I RCCGGY 1 cut(s) 532
BseBI CCWGG 2 cut(s) 202, 549
BseDI CCNNGG 8 cut(s) 15, 84, 90, 135, 201, 226, 390, 478
BseGI GGATG 2 cut(s) 352, 366
BseLI CCNNNNNNNGG 5 cut(s) 91, 97, 136, 141, 153
BseMII CTCAG 3 cut(s) 227, 243, 581
BseRI GAGGAG 3 cut(s) 32, 41, 187
BseSI GKGCMC 1 cut(s) 147
BseXI GCAGC 3 cut(s) 193, 287, 429
BsgI GTGCAG 1 cut(s) 286
Bsh1236I CGCG 2 cut(s) 284, 458
Bsh1285I CGRYCG 1 cut(s) 462
BshFI GGCC 8 cut(s) 8, 20, 32, 89, 145, 429, 452, 477
BshNI GGYRCC 3 cut(s) 103, 376, 395
BsiEI CGRYCG 1 cut(s) 462
BsiSI CCGG 5 cut(s) 86, 92, 98, 414, 533
BslI CCNNNNNNNGG 5 cut(s) 91, 97, 136, 141, 153
BsmAI GTCTC 2 cut(s) 266, 320
BsnI GGCC 8 cut(s) 8, 20, 32, 89, 145, 429, 452, 477
Bso31I GGTCTC 2 cut(s) 266, 320
Bsp120I GGGCCC 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 1 cut(s) 459
Bsp19I CCATGG 1 cut(s) 15
Bsp68I TCGCGA 1 cut(s) 458
BspANI GGCC 8 cut(s) 8, 20, 32, 89, 145, 429, 452, 477
BspCNI CTCAG 3 cut(s) 226, 244, 580
BspFNI CGCG 2 cut(s) 284, 458
BspLI GGNNCC 7 cut(s) 90, 96, 105, 145, 378, 397, 528
BspT107I GGYRCC 3 cut(s) 103, 376, 395
BspTNI GGTCTC 2 cut(s) 266, 320
BsrBI CCGCTC 1 cut(s) 612
BsrFI RCCGGY 1 cut(s) 532
BssAI RCCGGY 1 cut(s) 532
BssECI CCNNGG 8 cut(s) 15, 84, 90, 135, 201, 226, 390, 478
BssMI GATC 1 cut(s) 459
BssT1I CCWWGG 1 cut(s) 15
Bst2UI CCWGG 2 cut(s) 202, 549
Bst4CI ACNGT 4 cut(s) 136, 265, 296, 556
Bst6I CTCTTC 2 cut(s) 50, 59
BstC8I GCNNGC 4 cut(s) 431, 440, 485, 534
BstDEI CTNAG 3 cut(s) 213, 252, 567
BstDSI CCRYGG 2 cut(s) 15, 135
BstEII GGTNACC 1 cut(s) 385
BstF5I GGATG 2 cut(s) 352, 366
BstFNI CGCG 2 cut(s) 284, 458
BstH2I RGCGCY 1 cut(s) 603
BstHHI GCGC 2 cut(s) 538, 602
BstKTI GATC 1 cut(s) 462
BstMAI GTCTC 2 cut(s) 266, 320
BstMBI GATC 1 cut(s) 459
BstMCI CGRYCG 1 cut(s) 462
BstNI CCWGG 2 cut(s) 202, 549
BstPI GGTNACC 1 cut(s) 385
BstSCI CCNGG 4 cut(s) 84, 90, 200, 547
BstSLI GKGCMC 1 cut(s) 147
BstUI CGCG 2 cut(s) 284, 458
BstV1I GCAGC 3 cut(s) 193, 287, 429
BstV2I GAAGAC 1 cut(s) 371
BstXI CCANNNNNNTGG 1 cut(s) 16
BsuRI GGCC 8 cut(s) 8, 20, 32, 89, 145, 429, 452, 477
BtgI CCRYGG 2 cut(s) 15, 135
BtgZI GCGATG 1 cut(s) 49
BtrI CACGTC 1 cut(s) 318
BtsCI GGATG 2 cut(s) 352, 366
BtsI GCAGTG 1 cut(s) 440
BtsIMutI CAGTG 2 cut(s) 249, 440
BtuMI TCGCGA 1 cut(s) 458
Cac8I GCNNGC 4 cut(s) 431, 440, 485, 534
CfoI GCGC 2 cut(s) 538, 602
Cfr10I RCCGGY 1 cut(s) 532
Cfr13I GGNCC 3 cut(s) 88, 143, 144
Csp6I GTAC 2 cut(s) 121, 520
CviAII CATG 2 cut(s) 16, 448
CviQI GTAC 2 cut(s) 121, 520
DdeI CTNAG 3 cut(s) 213, 252, 567
DpnI GATC 1 cut(s) 461
DpnII GATC 1 cut(s) 459
DraIII CACNNNGTG 1 cut(s) 136
DriI GACNNNNNGTC 1 cut(s) 316
EaeI YGGCCR 4 cut(s) 6, 18, 30, 427
Eam1104I CTCTTC 2 cut(s) 50, 59
Eam1105I GACNNNNNGTC 1 cut(s) 316
EarI CTCTTC 2 cut(s) 50, 59
EciI GGCGGA 2 cut(s) 100, 504
Eco130I CCWWGG 1 cut(s) 15
Eco24I GRGCYC 1 cut(s) 147
Eco31I GGTCTC 2 cut(s) 266, 320
Eco91I GGTNACC 1 cut(s) 385
EcoO65I GGTNACC 1 cut(s) 385
EcoRII CCWGG 2 cut(s) 200, 547
EcoT14I CCWWGG 1 cut(s) 15
EcoT38I GRGCYC 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 2 cut(s) 19, 451
FaiI YATR 3 cut(s) 17, 292, 449
FatI CATG 2 cut(s) 15, 447
FauI CCCGC 1 cut(s) 349
FokI GGATG 2 cut(s) 359, 373
FriOI GRGCYC 1 cut(s) 147
FspBI CTAG 1 cut(s) 603
GlaI GCGC 2 cut(s) 537, 601
HaeII RGCGCY 1 cut(s) 603
HaeIII GGCC 8 cut(s) 8, 20, 32, 89, 145, 429, 452, 477
HapII CCGG 5 cut(s) 86, 92, 98, 414, 533
HhaI GCGC 2 cut(s) 538, 602
Hin1II CATG 2 cut(s) 19, 451
Hin6I GCGC 2 cut(s) 536, 600
HinP1I GCGC 2 cut(s) 536, 600
HpaII CCGG 5 cut(s) 86, 92, 98, 414, 533
HphI GGTGA 2 cut(s) 52, 277
Hpy166II GTNNAC 1 cut(s) 522
Hpy188I TCNGA 5 cut(s) 27, 216, 322, 563, 593
Hpy188III TCNNGA 1 cut(s) 457
Hpy8I GTNNAC 1 cut(s) 522
Hpy99I CGWCG 5 cut(s) 289, 322, 428, 563, 577
HpyAV CCTTC 4 cut(s) 117, 193, 229, 463
HpyCH4III ACNGT 4 cut(s) 136, 265, 296, 556
HpyCH4IV ACGT 1 cut(s) 317
HpyCH4V TGCA 1 cut(s) 303
HpyF3I CTNAG 3 cut(s) 213, 252, 567
HpySE526I ACGT 1 cut(s) 317
Hsp92II CATG 2 cut(s) 19, 451
HspAI GCGC 2 cut(s) 536, 600
KroI GCCGGC 1 cut(s) 532
KroNI GCCGGC 1 cut(s) 534
Kzo9I GATC 1 cut(s) 459
LmnI GCTCC 2 cut(s) 100, 526
Lsp1109I GCAGC 3 cut(s) 193, 287, 429
MaeI CTAG 1 cut(s) 603
MaeII ACGT 1 cut(s) 317
MaeIII GTNAC 1 cut(s) 385
MalI GATC 1 cut(s) 461
MbiI CCGCTC 1 cut(s) 612
MboI GATC 1 cut(s) 459
MboII GAAGA 4 cut(s) 37, 46, 151, 376
MhlI GDGCHC 1 cut(s) 147
MlsI TGGCCA 1 cut(s) 20
MluCI AATT 1 cut(s) 190
MluNI TGGCCA 1 cut(s) 20
MmeI TCCRAC 3 cut(s) 198, 300, 541
Mox20I TGGCCA 1 cut(s) 20
MreI CGCCGGCG 1 cut(s) 532
MroNI GCCGGC 1 cut(s) 532
MscI TGGCCA 1 cut(s) 20
MseI TTAA 2 cut(s) 126, 189
MslI CAYNNNNRTG 1 cut(s) 374
Msp20I TGGCCA 1 cut(s) 20
MspA1I CMGCKG 2 cut(s) 308, 420
MspI CCGG 5 cut(s) 86, 92, 98, 414, 533
MspR9I CCNGG 4 cut(s) 86, 92, 202, 549
MvaI CCWGG 2 cut(s) 202, 549
MvnI CGCG 2 cut(s) 284, 458
NaeI GCCGGC 1 cut(s) 534
NciI CCSGG 2 cut(s) 86, 92
NcoI CCATGG 1 cut(s) 15
NdeII GATC 1 cut(s) 459
NgoMIV GCCGGC 1 cut(s) 532
NlaIII CATG 2 cut(s) 19, 451
NlaIV GGNNCC 7 cut(s) 90, 96, 105, 145, 378, 397, 528
NmeAIII GCCGAG 2 cut(s) 207, 459
NruI TCGCGA 1 cut(s) 458
PdiI GCCGGC 1 cut(s) 534
PflMI CCANNNNNTGG 2 cut(s) 136, 153
Ple19I CGATCG 1 cut(s) 462
PshBI ATTAAT 1 cut(s) 189
Psp6I CCWGG 2 cut(s) 200, 547
PspEI GGTNACC 1 cut(s) 385
PspGI CCWGG 2 cut(s) 200, 547
PspN4I GGNNCC 7 cut(s) 90, 96, 105, 145, 378, 397, 528
PspOMI GGGCCC 1 cut(s) 143
PspPI GGNCC 3 cut(s) 88, 143, 144
PvuI CGATCG 1 cut(s) 462
RruI TCGCGA 1 cut(s) 458
RsaI GTAC 2 cut(s) 122, 521
RsaNI GTAC 2 cut(s) 121, 520
RseI CAYNNNNRTG 1 cut(s) 374
SaqAI TTAA 2 cut(s) 126, 189
Sau3AI GATC 1 cut(s) 459
Sau96I GGNCC 3 cut(s) 88, 143, 144
ScrFI CCNGG 4 cut(s) 86, 92, 202, 549
SduI GDGCHC 1 cut(s) 147
SetI ASST 7 cut(s) 109, 173, 221, 228, 302, 320, 514
SgrAI CRCCGGYG 1 cut(s) 532
SmiMI CAYNNNNRTG 1 cut(s) 374
Sse9I AATT 1 cut(s) 190
SspMI CTAG 1 cut(s) 603
StyD4I CCNGG 4 cut(s) 84, 90, 200, 547
StyI CCWWGG 1 cut(s) 15
TaaI ACNGT 4 cut(s) 136, 265, 296, 556
TaiI ACGT 1 cut(s) 320
TaqI TCGA 1 cut(s) 462
TasI AATT 1 cut(s) 190
TatI WGTACW 1 cut(s) 120
TauI GCSGC 7 cut(s) 8, 71, 423, 490, 532, 547, 600
Tru1I TTAA 2 cut(s) 126, 189
Tru9I TTAA 2 cut(s) 126, 189
TscAI CASTG 2 cut(s) 256, 440
TseI GCWGC 3 cut(s) 206, 300, 417
TspDTI ATGAA 4 cut(s) 46, 175, 325, 377
TspGWI ACGGA 1 cut(s) 539
TspRI CASTG 2 cut(s) 256, 440
Van91I CCANNNNNTGG 2 cut(s) 136, 153
VspI ATTAAT 1 cut(s) 189
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XspI CTAG 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.