RchiOBHm_Chr1g0351281

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0017359
Physical Location & Seq
Forward (+)
44577110 .. 44578669
1560 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57707

Sequence Viewer

Length: 630 bp
ATGGCGGCCAGACCTATGGCCAATCTGACGGCCATTATCCTCTTCCTCCTCCTCATCACCATCGCCGCCACTTCCGCTGCCCCGGCCCCGGCTCCGGTGGCACCTCCCGCCACCAAGTACATTAACCACACCGTGGGTGGGCCCATCGGGTGGTTCTTCAACTCCACCTCCAACACTTCCTTCACTAATTACTCCTCCTGGGCTGCTTCTCAGACCTTCAACCTCGGCGACTATCTAGTTTTCAACACTGAGAACCAGACGGTGATTGAGACCCAAAACGCGACGACATACCGTAGCTGCACAGCGGACGACACGTCGGACGAGACCACTTTCGTCTGGGGGGATGATACTGCGGGGAAGAAGACCATTGCGGTGCCATTGGTTACCGAGGGTGCCAACTACTACTTCTCCGGCAGCGGCGACGGCCAGCAGTGCCAGCAAGGCATGGCCTTCGCGATCGAAGTCAATCACGGCCTCGGCTTGCCGCCGATTCTCAATCAGCCTCCACTGGCGCAGTCGCCGCCTGGAACTGTCGTCGGAACTGAGCCGTCGGGGAGTAGTGGGTTCAGAAGCGGCGCTAGTTTGAGCGGAGGGTTATTAGTTGCGTTTGTGCTGGTTCTCAATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

209

Amino Acids

21.76

Weight (kDa)

4.46

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 59 - 149 7.7e-15 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017359)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12470
malus_domestica MD02G1199000.v1.1
prunus_persica Prupe.2G149300_v2.0.a1
pyrus_communis pycom02g16300
rosa_chinensis RchiOBHm_Chr1g0351281
rosa_laevigata RLG00000028418
rosa_roxburghii Rroxscaffold_4G00303910
rosa_rugosa Rorug01G0217500
rosa_samantha Rh1AG231900 Rh1BG202100 Rh1CG216600 Rh1DG229400
rosa_wichuraiana Rw1G020190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 100, 373, 392
AccB7I CCANNNNNTGG 2 cut(s) 133, 150
AccBSI CCGCTC 1 cut(s) 588
AccII CGCG 2 cut(s) 281, 455
AcoI YGGCCR 4 cut(s) 6, 18, 30, 424
AdeI CACNNNGTG 1 cut(s) 133
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 5 cut(s) 88, 94, 133, 138, 150
AflIII ACRYGT 1 cut(s) 312
AgsI TTSAA 3 cut(s) 160, 220, 244
AhdI GACNNNNNGTC 1 cut(s) 313
AjiI CACGTC 1 cut(s) 315
AjnI CCWGG 2 cut(s) 197, 523
AjuI GAANNNNNNNTTGG 4 cut(s) 164, 196, 389, 421
AluBI AGCT 1 cut(s) 297
AluI AGCT 1 cut(s) 297
Alw26I GTCTC 2 cut(s) 263, 317
AoxI GGCC 8 cut(s) 6, 18, 30, 84, 140, 424, 447, 472
ApaI GGGCCC 1 cut(s) 144
ApeKI GCWGC 4 cut(s) 77, 203, 297, 414
AspLEI GCGC 2 cut(s) 514, 578
AspS9I GGNCC 3 cut(s) 85, 140, 141
AsuC2I CCSGG 2 cut(s) 83, 89
AsuHPI GGTGA 2 cut(s) 49, 274
BaeGI GKGCMC 1 cut(s) 144
BalI TGGCCA 1 cut(s) 20
BanI GGYRCC 3 cut(s) 100, 373, 392
BanII GRGCYC 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 368
BbvI GCAGC 4 cut(s) 64, 190, 284, 426
BccI CCATC 2 cut(s) 68, 152
BceAI ACGGC 4 cut(s) 45, 439, 487, 532
BcgI CGANNNNNNTGC 2 cut(s) 433, 467
BciT130I CCWGG 2 cut(s) 199, 525
BcnI CCSGG 2 cut(s) 83, 89
BcoDI GTCTC 2 cut(s) 263, 317
BfaI CTAG 2 cut(s) 236, 579
BfoI RGCGCY 1 cut(s) 579
BglI GCCNNNNNGGC 1 cut(s) 441
Bme1390I CCNGG 4 cut(s) 83, 89, 199, 525
BmeRI GACNNNNNGTC 1 cut(s) 313
BmgBI CACGTC 1 cut(s) 315
BmgT120I GGNCC 3 cut(s) 85, 140, 141
BmiI GGNNCC 6 cut(s) 87, 93, 102, 142, 375, 394
BmrFI CCNGG 4 cut(s) 83, 89, 199, 525
BpiI GAAGAC 1 cut(s) 368
BpuMI CCSGG 2 cut(s) 83, 89
BsaI GGTCTC 2 cut(s) 263, 317
BsaJI CCNNGG 7 cut(s) 81, 87, 132, 198, 223, 387, 475
BsaWI WCCGGW 1 cut(s) 94
BsaXI ACNNNNNCTCC 4 cut(s) 152, 182, 392, 422
Bsc4I CCNNNNNNNGG 5 cut(s) 88, 94, 133, 138, 150
Bse1I ACTGG 1 cut(s) 513
Bse3DI GCAATG 1 cut(s) 366
BseBI CCWGG 2 cut(s) 199, 525
BseDI CCNNGG 7 cut(s) 81, 87, 132, 198, 223, 387, 475
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 5 cut(s) 88, 94, 133, 138, 150
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 3 cut(s) 224, 240, 534
BseNI ACTGG 1 cut(s) 513
BseRI GAGGAG 3 cut(s) 38, 41, 184
BseSI GKGCMC 1 cut(s) 144
BseXI GCAGC 4 cut(s) 64, 190, 284, 426
BsgI GTGCAG 1 cut(s) 283
Bsh1236I CGCG 2 cut(s) 281, 455
Bsh1285I CGRYCG 1 cut(s) 459
BshFI GGCC 8 cut(s) 8, 20, 32, 86, 142, 426, 449, 474
BshNI GGYRCC 3 cut(s) 100, 373, 392
BsiEI CGRYCG 1 cut(s) 459
BsiSI CCGG 4 cut(s) 83, 89, 95, 411
BslI CCNNNNNNNGG 5 cut(s) 88, 94, 133, 138, 150
BsmAI GTCTC 2 cut(s) 263, 317
BsnI GGCC 8 cut(s) 8, 20, 32, 86, 142, 426, 449, 474
Bso31I GGTCTC 2 cut(s) 263, 317
Bsp120I GGGCCC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 1 cut(s) 456
Bsp68I TCGCGA 1 cut(s) 455
BspANI GGCC 8 cut(s) 8, 20, 32, 86, 142, 426, 449, 474
BspCNI CTCAG 3 cut(s) 223, 241, 535
BspFNI CGCG 2 cut(s) 281, 455
BspLI GGNNCC 6 cut(s) 87, 93, 102, 142, 375, 394
BspT107I GGYRCC 3 cut(s) 100, 373, 392
BspTNI GGTCTC 2 cut(s) 263, 317
BsrBI CCGCTC 1 cut(s) 588
BsrDI GCAATG 1 cut(s) 366
BsrI ACTGG 1 cut(s) 513
BssECI CCNNGG 7 cut(s) 81, 87, 132, 198, 223, 387, 475
BssMI GATC 1 cut(s) 456
Bst2UI CCWGG 2 cut(s) 199, 525
Bst4CI ACNGT 4 cut(s) 133, 262, 293, 532
Bst6I CTCTTC 1 cut(s) 47
BstC8I GCNNGC 3 cut(s) 428, 437, 482
BstDEI CTNAG 3 cut(s) 210, 249, 543
BstDSI CCRYGG 1 cut(s) 132
BstEII GGTNACC 1 cut(s) 382
BstF5I GGATG 1 cut(s) 349
BstFNI CGCG 2 cut(s) 281, 455
BstH2I RGCGCY 1 cut(s) 579
BstHHI GCGC 2 cut(s) 514, 578
BstKTI GATC 1 cut(s) 459
BstMAI GTCTC 2 cut(s) 263, 317
BstMBI GATC 1 cut(s) 456
BstMCI CGRYCG 1 cut(s) 459
BstMWI GCNNNNNNNGC 9 cut(s) 74, 83, 98, 107, 423, 432, 436, 441, 520
BstNI CCWGG 2 cut(s) 199, 525
BstPI GGTNACC 1 cut(s) 382
BstSCI CCNGG 4 cut(s) 81, 87, 197, 523
BstSLI GKGCMC 1 cut(s) 144
BstUI CGCG 2 cut(s) 281, 455
BstV1I GCAGC 4 cut(s) 64, 190, 284, 426
BstV2I GAAGAC 1 cut(s) 368
BstXI CCANNNNNNTGG 1 cut(s) 16
BsuRI GGCC 8 cut(s) 8, 20, 32, 86, 142, 426, 449, 474
BtgI CCRYGG 1 cut(s) 132
BtgZI GCGATG 1 cut(s) 46
BtrI CACGTC 1 cut(s) 315
BtsCI GGATG 1 cut(s) 349
BtsI GCAGTG 1 cut(s) 437
BtsIMutI CAGTG 3 cut(s) 246, 437, 506
BtuMI TCGCGA 1 cut(s) 455
Cac8I GCNNGC 3 cut(s) 428, 437, 482
CfoI GCGC 2 cut(s) 514, 578
Cfr13I GGNCC 3 cut(s) 85, 140, 141
Csp6I GTAC 1 cut(s) 118
CviAII CATG 1 cut(s) 445
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 3 cut(s) 210, 249, 543
DpnI GATC 1 cut(s) 458
DpnII GATC 1 cut(s) 456
DraIII CACNNNGTG 1 cut(s) 133
DriI GACNNNNNGTC 1 cut(s) 313
EaeI YGGCCR 4 cut(s) 6, 18, 30, 424
Eam1104I CTCTTC 1 cut(s) 47
Eam1105I GACNNNNNGTC 1 cut(s) 313
EarI CTCTTC 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 144
Eco31I GGTCTC 2 cut(s) 263, 317
Eco91I GGTNACC 1 cut(s) 382
EcoO65I GGTNACC 1 cut(s) 382
EcoRII CCWGG 2 cut(s) 197, 523
EcoT38I GRGCYC 1 cut(s) 144
FaeI CATG 1 cut(s) 448
FaiI YATR 3 cut(s) 17, 289, 446
FatI CATG 1 cut(s) 444
FauI CCCGC 2 cut(s) 115, 346
FokI GGATG 1 cut(s) 356
FriOI GRGCYC 1 cut(s) 144
FspBI CTAG 2 cut(s) 236, 579
GlaI GCGC 2 cut(s) 513, 577
HaeII RGCGCY 1 cut(s) 579
HaeIII GGCC 8 cut(s) 8, 20, 32, 86, 142, 426, 449, 474
HapII CCGG 4 cut(s) 83, 89, 95, 411
HhaI GCGC 2 cut(s) 514, 578
Hin1II CATG 1 cut(s) 448
Hin6I GCGC 2 cut(s) 512, 576
HinP1I GCGC 2 cut(s) 512, 576
HinfI GANTC 1 cut(s) 490
HpaII CCGG 4 cut(s) 83, 89, 95, 411
HphI GGTGA 2 cut(s) 49, 274
Hpy188I TCNGA 5 cut(s) 27, 213, 319, 539, 569
Hpy188III TCNNGA 1 cut(s) 454
Hpy99I CGWCG 5 cut(s) 286, 319, 425, 539, 553
HpyAV CCTTC 3 cut(s) 190, 226, 460
HpyCH4III ACNGT 4 cut(s) 133, 262, 293, 532
HpyCH4IV ACGT 1 cut(s) 314
HpyCH4V TGCA 1 cut(s) 300
HpyF10VI GCNNNNNNNGC 9 cut(s) 74, 83, 98, 107, 423, 432, 436, 441, 520
HpyF3I CTNAG 3 cut(s) 210, 249, 543
HpySE526I ACGT 1 cut(s) 314
Hsp92II CATG 1 cut(s) 448
HspAI GCGC 2 cut(s) 512, 576
Kzo9I GATC 1 cut(s) 456
LmnI GCTCC 1 cut(s) 97
Lsp1109I GCAGC 4 cut(s) 64, 190, 284, 426
MaeI CTAG 2 cut(s) 236, 579
MaeII ACGT 1 cut(s) 314
MaeIII GTNAC 1 cut(s) 382
MalI GATC 1 cut(s) 458
MbiI CCGCTC 1 cut(s) 588
MboI GATC 1 cut(s) 456
MboII GAAGA 4 cut(s) 34, 148, 370, 373
MhlI GDGCHC 1 cut(s) 144
MlsI TGGCCA 1 cut(s) 20
MluCI AATT 1 cut(s) 187
MluNI TGGCCA 1 cut(s) 20
MmeI TCCRAC 3 cut(s) 195, 297, 517
Mox20I TGGCCA 1 cut(s) 20
MscI TGGCCA 1 cut(s) 20
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 371
Msp20I TGGCCA 1 cut(s) 20
MspA1I CMGCKG 3 cut(s) 77, 305, 417
MspI CCGG 4 cut(s) 83, 89, 95, 411
MspR9I CCNGG 4 cut(s) 83, 89, 199, 525
MvaI CCWGG 2 cut(s) 199, 525
MvnI CGCG 2 cut(s) 281, 455
MwoI GCNNNNNNNGC 9 cut(s) 74, 83, 98, 107, 423, 432, 436, 441, 520
NciI CCSGG 2 cut(s) 83, 89
NdeII GATC 1 cut(s) 456
NlaIII CATG 1 cut(s) 448
NlaIV GGNNCC 6 cut(s) 87, 93, 102, 142, 375, 394
NmeAIII GCCGAG 2 cut(s) 204, 456
NruI TCGCGA 1 cut(s) 455
PfeI GAWTC 1 cut(s) 490
PflMI CCANNNNNTGG 2 cut(s) 133, 150
Ple19I CGATCG 1 cut(s) 459
Psp6I CCWGG 2 cut(s) 197, 523
PspEI GGTNACC 1 cut(s) 382
PspGI CCWGG 2 cut(s) 197, 523
PspN4I GGNNCC 6 cut(s) 87, 93, 102, 142, 375, 394
PspOMI GGGCCC 1 cut(s) 140
PspPI GGNCC 3 cut(s) 85, 140, 141
PvuI CGATCG 1 cut(s) 459
RruI TCGCGA 1 cut(s) 455
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
RseI CAYNNNNRTG 1 cut(s) 371
SaqAI TTAA 1 cut(s) 123
Sau3AI GATC 1 cut(s) 456
Sau96I GGNCC 3 cut(s) 85, 140, 141
ScrFI CCNGG 4 cut(s) 83, 89, 199, 525
SduI GDGCHC 1 cut(s) 144
SetI ASST 7 cut(s) 16, 106, 170, 218, 225, 299, 317
SmiMI CAYNNNNRTG 1 cut(s) 371
Sse9I AATT 1 cut(s) 187
SspMI CTAG 2 cut(s) 236, 579
StyD4I CCNGG 4 cut(s) 81, 87, 197, 523
TaaI ACNGT 4 cut(s) 133, 262, 293, 532
TaiI ACGT 1 cut(s) 317
TaqI TCGA 1 cut(s) 459
TasI AATT 1 cut(s) 187
TatI WGTACW 1 cut(s) 117
TauI GCSGC 6 cut(s) 8, 68, 420, 487, 523, 576
TfiI GAWTC 1 cut(s) 490
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 3 cut(s) 253, 437, 513
TseI GCWGC 4 cut(s) 77, 203, 297, 414
TspRI CASTG 3 cut(s) 253, 437, 513
Van91I CCANNNNNTGG 2 cut(s) 133, 150
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
XspI CTAG 2 cut(s) 236, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.