Prupe.2G149300_v2.0.a1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0017359
Physical Location & Seq
Forward (+)
20475942 .. 20477826
1885 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G149300.1

Sequence Viewer

Length: 630 bp
ATGGCGAATCCGACGGTCACTGTTATTCTCATCGCCATCACCGCCACAGCTGCCGCAGCAGCTGCGCCTCCGGCTACTCAATACACAAACCACACCGTCGGTGGGCCCACCGGCTGGTTCTTCAACGCCACCACCAACTCTTCCTTCGCCAATTACTCCTCTTGGGCCGCCTCCCAGACCTTCAATCTTGGCGATTACCTCATCTTCAACACAAGCACAAACCAGACGGTGATTGAAACCTACAACGAAACGACATACCGTGGCTGCACACCGGACGACGACGCGTTCGAGTACGGCGGCGGCAGCAATGCGTTCGGGGAGGCGCAGACCATCGCGGTACCGTTGACCCTCGAGGGTCCCGCCTACTACTTCTCCGGAGCCGGCGACGGCGAGCAGTGCCAGCAGGGCATGGCCTTCGCGATCCAAGTCAACAAGGGGCTCGGGTTGCCGCCGATCCTCAACCAACCTCCGCCTCCGCCGTACAGTGAGCCTCCGAGTGCTTCGACTCAGTCACCGCCTGTGACCGTCGCCGGAGATCAGACGCCGGGGAATGGAGGAATGAGAAGCGGTGCTAACATGCGCGAGGGGTTATTTGGGCTTCTTGCTTTGCTGCTGCTTCTTAGGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

210

Amino Acids

21.77

Weight (kDa)

4.17

Isoelectric Point (pI)

35.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017359)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12470
malus_domestica MD02G1199000.v1.1
prunus_persica Prupe.2G149300_v2.0.a1
pyrus_communis pycom02g16300
rosa_chinensis RchiOBHm_Chr1g0351281
rosa_laevigata RLG00000028418
rosa_roxburghii Rroxscaffold_4G00303910
rosa_rugosa Rorug01G0217500
rosa_samantha Rh1AG231900 Rh1BG202100 Rh1CG216600 Rh1DG229400
rosa_wichuraiana Rw1G020190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 350
Acc65I GGTACC 1 cut(s) 337
AccB1I GGYRCC 1 cut(s) 337
AccB7I CCANNNNNTGG 1 cut(s) 114
AccII CGCG 4 cut(s) 284, 335, 419, 582
AccIII TCCGGA 1 cut(s) 374
AclWI GGATC 2 cut(s) 415, 448
AcyI GRCGYC 1 cut(s) 542
AfaI GTAC 3 cut(s) 293, 339, 482
AfiI CCNNNNNNNGG 3 cut(s) 102, 114, 551
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 4 cut(s) 124, 184, 208, 236
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AluBI AGCT 2 cut(s) 50, 62
AluI AGCT 2 cut(s) 50, 62
AlwI GGATC 2 cut(s) 415, 448
AlwNI CAGNNNCTG 1 cut(s) 62
Ama87I CYCGRG 2 cut(s) 350, 440
Aor13HI TCCGGA 1 cut(s) 374
AoxI GGCC 3 cut(s) 104, 165, 411
ApaI GGGCCC 1 cut(s) 108
ApeKI GCWGC 8 cut(s) 50, 56, 59, 62, 264, 303, 610, 613
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
Asp718I GGTACC 1 cut(s) 337
AspLEI GCGC 3 cut(s) 67, 325, 582
AspS9I GGNCC 4 cut(s) 104, 105, 165, 356
AsuC2I CCSGG 1 cut(s) 546
AsuHPI GGTGA 3 cut(s) 31, 241, 504
AvaI CYCGRG 2 cut(s) 350, 440
AvaII GGWCC 1 cut(s) 356
BaeGI GKGCMC 1 cut(s) 108
BanI GGYRCC 1 cut(s) 337
BanII GRGCYC 2 cut(s) 108, 441
BbvI GCAGC 8 cut(s) 37, 49, 68, 71, 251, 315, 597, 600
BccI CCATC 2 cut(s) 44, 338
BceAI ACGGC 3 cut(s) 310, 403, 463
BcgI CGANNNNNNTGC 4 cut(s) 295, 329, 397, 431
BcnI CCSGG 1 cut(s) 546
BglI GCCNNNNNGGC 1 cut(s) 405
Bme1390I CCNGG 1 cut(s) 546
Bme18I GGWCC 1 cut(s) 356
BmeT110I CYCGRG 2 cut(s) 350, 440
BmgT120I GGNCC 4 cut(s) 104, 105, 165, 356
BmiI GGNNCC 5 cut(s) 106, 339, 357, 358, 379
BmrFI CCNGG 1 cut(s) 546
BpuMI CCSGG 1 cut(s) 546
BsaHI GRCGYC 1 cut(s) 542
BsaJI CCNNGG 2 cut(s) 259, 545
BsaWI WCCGGW 2 cut(s) 271, 374
BsaXI ACNNNNNCTCC 2 cut(s) 356, 386
Bsc4I CCNNNNNNNGG 3 cut(s) 102, 114, 551
Bse118I RCCGGY 2 cut(s) 110, 380
Bse3DI GCAATG 1 cut(s) 313
BseAI TCCGGA 1 cut(s) 374
BseDI CCNNGG 2 cut(s) 259, 545
BseLI CCNNNNNNNGG 3 cut(s) 102, 114, 551
BseMI GCAATG 1 cut(s) 313
BseMII CTCAG 1 cut(s) 521
BseRI GAGGAG 1 cut(s) 148
BseSI GKGCMC 1 cut(s) 108
BseXI GCAGC 8 cut(s) 37, 49, 68, 71, 251, 315, 597, 600
BsgI GTGCAG 1 cut(s) 250
Bsh1236I CGCG 4 cut(s) 284, 335, 419, 582
BshFI GGCC 3 cut(s) 106, 167, 413
BshNI GGYRCC 1 cut(s) 337
BsiHKCI CYCGRG 2 cut(s) 350, 440
BsiSI CCGG 7 cut(s) 71, 111, 272, 375, 381, 531, 545
BslFI GGGAC 1 cut(s) 342
BslI CCNNNNNNNGG 3 cut(s) 102, 114, 551
BsmFI GGGAC 1 cut(s) 342
BsnI GGCC 3 cut(s) 106, 167, 413
BsoBI CYCGRG 2 cut(s) 350, 440
Bsp120I GGGCCC 1 cut(s) 104
Bsp1286I GDGCHC 2 cut(s) 108, 441
Bsp13I TCCGGA 1 cut(s) 374
Bsp143I GATC 3 cut(s) 420, 453, 535
Bsp68I TCGCGA 1 cut(s) 419
BspANI GGCC 3 cut(s) 106, 167, 413
BspCNI CTCAG 1 cut(s) 520
BspEI TCCGGA 1 cut(s) 374
BspFNI CGCG 4 cut(s) 284, 335, 419, 582
BspLI GGNNCC 5 cut(s) 106, 339, 357, 358, 379
BspPI GGATC 2 cut(s) 415, 448
BspT107I GGYRCC 1 cut(s) 337
BsrDI GCAATG 1 cut(s) 313
BsrFI RCCGGY 2 cut(s) 110, 380
BssAI RCCGGY 2 cut(s) 110, 380
BssECI CCNNGG 2 cut(s) 259, 545
BssMI GATC 3 cut(s) 420, 453, 535
BssNI GRCGYC 1 cut(s) 542
Bst4CI ACNGT 8 cut(s) 16, 22, 97, 229, 260, 342, 485, 526
Bst6I CTCTTC 1 cut(s) 145
BstACI GRCGYC 1 cut(s) 542
BstAPI GCANNNNNTGC 1 cut(s) 62
BstC8I GCNNGC 3 cut(s) 382, 392, 401
BstDEI CTNAG 2 cut(s) 507, 620
BstDSI CCRYGG 1 cut(s) 259
BstFNI CGCG 4 cut(s) 284, 335, 419, 582
BstHHI GCGC 3 cut(s) 67, 325, 582
BstKTI GATC 3 cut(s) 423, 456, 538
BstMBI GATC 3 cut(s) 420, 453, 535
BstNSI RCATGY 1 cut(s) 580
BstSCI CCNGG 1 cut(s) 544
BstSLI GKGCMC 1 cut(s) 108
BstUI CGCG 4 cut(s) 284, 335, 419, 582
BstV1I GCAGC 8 cut(s) 37, 49, 68, 71, 251, 315, 597, 600
BsuRI GGCC 3 cut(s) 106, 167, 413
BtgI CCRYGG 1 cut(s) 259
BtgZI GCGATG 2 cut(s) 16, 316
BtsI GCAGTG 1 cut(s) 401
BtsIMutI CAGTG 3 cut(s) 18, 401, 490
BtuMI TCGCGA 1 cut(s) 419
Cac8I GCNNGC 3 cut(s) 382, 392, 401
CaiI CAGNNNCTG 1 cut(s) 62
CfoI GCGC 3 cut(s) 67, 325, 582
Cfr10I RCCGGY 2 cut(s) 110, 380
Cfr13I GGNCC 4 cut(s) 104, 105, 165, 356
CseI GACGC 2 cut(s) 290, 550
Csp6I GTAC 3 cut(s) 292, 338, 481
CviAII CATG 2 cut(s) 409, 577
CviQI GTAC 3 cut(s) 292, 338, 481
DdeI CTNAG 2 cut(s) 507, 620
DpnI GATC 3 cut(s) 422, 455, 537
DpnII GATC 3 cut(s) 420, 453, 535
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
EciI GGCGGA 2 cut(s) 459, 465
Eco24I GRGCYC 2 cut(s) 108, 441
Eco47I GGWCC 1 cut(s) 356
Eco88I CYCGRG 2 cut(s) 350, 440
EcoO109I RGGNCCY 1 cut(s) 356
EcoT38I GRGCYC 2 cut(s) 108, 441
FaeI CATG 2 cut(s) 412, 580
FaiI YATR 3 cut(s) 256, 410, 578
FaqI GGGAC 1 cut(s) 342
FatI CATG 2 cut(s) 408, 576
FauI CCCGC 1 cut(s) 367
FriOI GRGCYC 2 cut(s) 108, 441
GlaI GCGC 3 cut(s) 66, 324, 581
HaeIII GGCC 3 cut(s) 106, 167, 413
HapII CCGG 7 cut(s) 71, 111, 272, 375, 381, 531, 545
HgaI GACGC 2 cut(s) 290, 550
HhaI GCGC 3 cut(s) 67, 325, 582
Hin1I GRCGYC 1 cut(s) 542
Hin1II CATG 2 cut(s) 412, 580
Hin6I GCGC 3 cut(s) 65, 323, 580
HinP1I GCGC 3 cut(s) 65, 323, 580
HincII GTYRAC 2 cut(s) 345, 430
HindII GTYRAC 2 cut(s) 345, 430
HinfI GANTC 2 cut(s) 7, 505
HpaII CCGG 7 cut(s) 71, 111, 272, 375, 381, 531, 545
HphI GGTGA 3 cut(s) 31, 241, 504
Hpy166II GTNNAC 2 cut(s) 345, 430
Hpy188I TCNGA 3 cut(s) 12, 495, 540
Hpy188III TCNNGA 2 cut(s) 375, 418
Hpy8I GTNNAC 2 cut(s) 345, 430
Hpy99I CGWCG 6 cut(s) 16, 101, 281, 284, 389, 530
HpyAV CCTTC 3 cut(s) 154, 190, 424
HpyCH4III ACNGT 8 cut(s) 16, 22, 97, 229, 260, 342, 485, 526
HpyCH4V TGCA 1 cut(s) 267
HpyF3I CTNAG 2 cut(s) 507, 620
Hsp92I GRCGYC 1 cut(s) 542
Hsp92II CATG 2 cut(s) 412, 580
HspAI GCGC 3 cut(s) 65, 323, 580
KflI GGGWCCC 1 cut(s) 356
Kpn2I TCCGGA 1 cut(s) 374
KpnI GGTACC 1 cut(s) 341
KroI GCCGGC 1 cut(s) 380
KroNI GCCGGC 1 cut(s) 382
Kzo9I GATC 3 cut(s) 420, 453, 535
LmnI GCTCC 1 cut(s) 377
Lsp1109I GCAGC 8 cut(s) 37, 49, 68, 71, 251, 315, 597, 600
MaeIII GTNAC 3 cut(s) 16, 510, 520
MalI GATC 3 cut(s) 422, 455, 537
MboI GATC 3 cut(s) 420, 453, 535
MboII GAAGA 3 cut(s) 112, 132, 196
MhlI GDGCHC 2 cut(s) 108, 441
MluCI AATT 1 cut(s) 151
MluI ACGCGT 1 cut(s) 282
MlyI GAGTC 1 cut(s) 499
MmeI TCCRAC 1 cut(s) 35
MroI TCCGGA 1 cut(s) 374
MroNI GCCGGC 1 cut(s) 380
MspA1I CMGCKG 2 cut(s) 50, 62
MspI CCGG 7 cut(s) 71, 111, 272, 375, 381, 531, 545
MspR9I CCNGG 1 cut(s) 546
MvnI CGCG 4 cut(s) 284, 335, 419, 582
NaeI GCCGGC 1 cut(s) 382
NciI CCSGG 1 cut(s) 546
NdeII GATC 3 cut(s) 420, 453, 535
NgoMIV GCCGGC 1 cut(s) 380
NlaIII CATG 2 cut(s) 412, 580
NlaIV GGNNCC 5 cut(s) 106, 339, 357, 358, 379
NmuCI GTSAC 3 cut(s) 16, 510, 520
NruI TCGCGA 1 cut(s) 419
NspI RCATGY 1 cut(s) 580
PaeR7I CTCGAG 1 cut(s) 350
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PdiI GCCGGC 1 cut(s) 382
PfeI GAWTC 1 cut(s) 7
PflFI GACNNNGTC 1 cut(s) 508
PflMI CCANNNNNTGG 1 cut(s) 114
PleI GAGTC 1 cut(s) 499
PpsI GAGTC 1 cut(s) 499
PpuMI RGGWCCY 1 cut(s) 356
Psp5II RGGWCCY 1 cut(s) 356
PspN4I GGNNCC 5 cut(s) 106, 339, 357, 358, 379
PspOMI GGGCCC 1 cut(s) 104
PspPI GGNCC 4 cut(s) 104, 105, 165, 356
PspPPI RGGWCCY 1 cut(s) 356
PspXI VCTCGAGB 1 cut(s) 350
PstNI CAGNNNCTG 1 cut(s) 62
PsyI GACNNNGTC 1 cut(s) 508
PvuII CAGCTG 2 cut(s) 50, 62
RruI TCGCGA 1 cut(s) 419
RsaI GTAC 3 cut(s) 293, 339, 482
RsaNI GTAC 3 cut(s) 292, 338, 481
Sau3AI GATC 3 cut(s) 420, 453, 535
Sau96I GGNCC 4 cut(s) 104, 105, 165, 356
SchI GAGTC 1 cut(s) 499
ScrFI CCNGG 1 cut(s) 546
SduI GDGCHC 2 cut(s) 108, 441
SetI ASST 6 cut(s) 52, 64, 182, 201, 242, 469
Sfr274I CTCGAG 1 cut(s) 350
SinI GGWCC 1 cut(s) 356
SlaI CTCGAG 1 cut(s) 350
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 1 cut(s) 151
StyD4I CCNGG 1 cut(s) 544
TaaI ACNGT 8 cut(s) 16, 22, 97, 229, 260, 342, 485, 526
TaqI TCGA 3 cut(s) 288, 351, 503
TasI AATT 1 cut(s) 151
TauI GCSGC 5 cut(s) 56, 170, 300, 303, 451
TfiI GAWTC 1 cut(s) 7
TscAI CASTG 3 cut(s) 25, 401, 490
TseFI GTSAC 3 cut(s) 16, 510, 520
TseI GCWGC 8 cut(s) 50, 56, 59, 62, 264, 303, 610, 613
Tsp45I GTSAC 3 cut(s) 16, 510, 520
TspRI CASTG 3 cut(s) 25, 401, 490
Tth111I GACNNNGTC 1 cut(s) 508
Van91I CCANNNNNTGG 1 cut(s) 114
VpaK11BI GGWCC 1 cut(s) 356
XceI RCATGY 1 cut(s) 580
XcmI CCANNNNNNNNNTGG 1 cut(s) 98
XhoI CTCGAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.