Rh1AG231900

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0017359
Physical Location & Seq
Forward (+)
44120084 .. 44121535
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG231900.1

Sequence Viewer

Length: 645 bp
ATGGCGGCCAGACCTATGGCCAATCTGACGGCCATTATCCTCTTCCTCCTCCTCATCACCATCGCCGCCACTTCCGCTGCCCCTGCCCCGGCGGCTCCTCCCGCCACCAAGTACATTAACCACACCGTGGGTGGGCCCATCGGGTGGTTCTTCAACTCCACCTCCAACACTTCCTTCACTAATTACTCCTCCTGGGCTGCTTCTCAGACCTTCAACCTCGGCGACTATCTAGTTTTCAACACTGAGAACCAGACGGTGATTGACACCCAAAACGCGACGACATACCGTAGCTGCACAGCGGACGACACGTCGGACGAGACCACTTTCGTCTGGGGGGATGATACTGCGGGGAAGAAGACCATTGTGGTGCCATTGGTTACCGAGGGTGCCAACTACTACTTCTCCGGCAGCGGCGACGGCCAGCAGTGCCAGCAAGGCATGGCCTTCGCGATCGAAGTCAATCACGGCCTCGGCTTGCCGCCGATTCTCAATCAGCCTCCACCTCCGCCGTACACGGAGCCGCCGGCGCAGTCGACGCCTGGAACTGTCGACGGAACTCAGCCGTCGGGGAATAGTGGGTTCAGAAGCGGCGCTAGTTTGAGCGGAGGGTTATTGGTTGCGTTTGTGCTGGTTCTCAAGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

214

Amino Acids

22.4

Weight (kDa)

4.47

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 57 - 147 1.8e-14 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017359)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12470
malus_domestica MD02G1199000.v1.1
prunus_persica Prupe.2G149300_v2.0.a1
pyrus_communis pycom02g16300
rosa_chinensis RchiOBHm_Chr1g0351281
rosa_laevigata RLG00000028418
rosa_roxburghii Rroxscaffold_4G00303910
rosa_rugosa Rorug01G0217500
rosa_samantha Rh1AG231900 Rh1BG202100 Rh1CG216600 Rh1DG229400
rosa_wichuraiana Rw1G020190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 367, 386
AccB7I CCANNNNNTGG 2 cut(s) 127, 144
AccBSI CCGCTC 1 cut(s) 603
AccI GTMKAC 2 cut(s) 533, 549
AccII CGCG 2 cut(s) 275, 449
AcoI YGGCCR 4 cut(s) 6, 18, 30, 418
AcyI GRCGYC 1 cut(s) 536
AdeI CACNNNGTG 1 cut(s) 127
AfaI GTAC 2 cut(s) 113, 512
AfiI CCNNNNNNNGG 4 cut(s) 88, 127, 132, 144
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 3 cut(s) 154, 214, 238
AhdI GACNNNNNGTC 1 cut(s) 307
AjiI CACGTC 1 cut(s) 309
AjnI CCWGG 2 cut(s) 191, 538
AjuI GAANNNNNNNTTGG 4 cut(s) 158, 190, 383, 415
AluBI AGCT 1 cut(s) 291
AluI AGCT 1 cut(s) 291
Alw26I GTCTC 1 cut(s) 311
AoxI GGCC 7 cut(s) 6, 18, 30, 134, 418, 441, 466
ApaI GGGCCC 1 cut(s) 138
ApeKI GCWGC 4 cut(s) 77, 197, 291, 408
AspLEI GCGC 2 cut(s) 529, 593
AspS9I GGNCC 2 cut(s) 134, 135
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 2 cut(s) 49, 268
BaeGI GKGCMC 1 cut(s) 138
BalI TGGCCA 1 cut(s) 20
BanI GGYRCC 2 cut(s) 367, 386
BanII GRGCYC 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 362
BbvI GCAGC 4 cut(s) 64, 184, 278, 420
BccI CCATC 2 cut(s) 68, 146
BceAI ACGGC 5 cut(s) 45, 433, 481, 493, 547
BcgI CGANNNNNNTGC 2 cut(s) 427, 461
BciT130I CCWGG 2 cut(s) 193, 540
BcnI CCSGG 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 311
BfaI CTAG 2 cut(s) 230, 594
BfoI RGCGCY 1 cut(s) 594
BglI GCCNNNNNGGC 2 cut(s) 92, 435
Bme1390I CCNGG 3 cut(s) 89, 193, 540
BmeRI GACNNNNNGTC 1 cut(s) 307
BmgBI CACGTC 1 cut(s) 309
BmgT120I GGNCC 2 cut(s) 134, 135
BmiI GGNNCC 5 cut(s) 96, 136, 369, 388, 519
BmrFI CCNGG 3 cut(s) 89, 193, 540
BpiI GAAGAC 1 cut(s) 362
BpuEI CTTGAG 1 cut(s) 620
BpuMI CCSGG 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 536
BsaI GGTCTC 1 cut(s) 311
BsaJI CCNNGG 6 cut(s) 87, 126, 192, 217, 381, 469
BsaXI ACNNNNNCTCC 4 cut(s) 146, 176, 386, 416
Bsc4I CCNNNNNNNGG 4 cut(s) 88, 127, 132, 144
Bse118I RCCGGY 1 cut(s) 523
BseBI CCWGG 2 cut(s) 193, 540
BseDI CCNNGG 6 cut(s) 87, 126, 192, 217, 381, 469
BseGI GGATG 1 cut(s) 343
BseLI CCNNNNNNNGG 4 cut(s) 88, 127, 132, 144
BseMII CTCAG 3 cut(s) 218, 234, 572
BseRI GAGGAG 4 cut(s) 38, 41, 87, 178
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 4 cut(s) 64, 184, 278, 420
BsgI GTGCAG 1 cut(s) 277
Bsh1236I CGCG 2 cut(s) 275, 449
Bsh1285I CGRYCG 1 cut(s) 453
BshFI GGCC 7 cut(s) 8, 20, 32, 136, 420, 443, 468
BshNI GGYRCC 2 cut(s) 367, 386
BsiEI CGRYCG 1 cut(s) 453
BsiSI CCGG 3 cut(s) 89, 405, 524
BslI CCNNNNNNNGG 4 cut(s) 88, 127, 132, 144
BsmAI GTCTC 1 cut(s) 311
BsnI GGCC 7 cut(s) 8, 20, 32, 136, 420, 443, 468
Bso31I GGTCTC 1 cut(s) 311
Bsp120I GGGCCC 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 1 cut(s) 450
Bsp68I TCGCGA 1 cut(s) 449
BspANI GGCC 7 cut(s) 8, 20, 32, 136, 420, 443, 468
BspCNI CTCAG 3 cut(s) 217, 235, 571
BspFNI CGCG 2 cut(s) 275, 449
BspLI GGNNCC 5 cut(s) 96, 136, 369, 388, 519
BspT107I GGYRCC 2 cut(s) 367, 386
BspTNI GGTCTC 1 cut(s) 311
BsrBI CCGCTC 1 cut(s) 603
BsrFI RCCGGY 1 cut(s) 523
BssAI RCCGGY 1 cut(s) 523
BssECI CCNNGG 6 cut(s) 87, 126, 192, 217, 381, 469
BssMI GATC 1 cut(s) 450
BssNI GRCGYC 1 cut(s) 536
Bst2UI CCWGG 2 cut(s) 193, 540
Bst4CI ACNGT 4 cut(s) 127, 256, 287, 547
Bst6I CTCTTC 1 cut(s) 47
BstACI GRCGYC 1 cut(s) 536
BstC8I GCNNGC 4 cut(s) 422, 431, 476, 525
BstDEI CTNAG 3 cut(s) 204, 243, 558
BstDSI CCRYGG 1 cut(s) 126
BstEII GGTNACC 1 cut(s) 376
BstF5I GGATG 1 cut(s) 343
BstFNI CGCG 2 cut(s) 275, 449
BstH2I RGCGCY 1 cut(s) 594
BstHHI GCGC 2 cut(s) 529, 593
BstKTI GATC 1 cut(s) 453
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 1 cut(s) 450
BstMCI CGRYCG 1 cut(s) 453
BstNI CCWGG 2 cut(s) 193, 540
BstPI GGTNACC 1 cut(s) 376
BstSCI CCNGG 3 cut(s) 87, 191, 538
BstSLI GKGCMC 1 cut(s) 138
BstUI CGCG 2 cut(s) 275, 449
BstV1I GCAGC 4 cut(s) 64, 184, 278, 420
BstV2I GAAGAC 1 cut(s) 362
BstXI CCANNNNNNTGG 1 cut(s) 16
BsuRI GGCC 7 cut(s) 8, 20, 32, 136, 420, 443, 468
BtgI CCRYGG 1 cut(s) 126
BtgZI GCGATG 1 cut(s) 46
BtrI CACGTC 1 cut(s) 309
BtsCI GGATG 1 cut(s) 343
BtsI GCAGTG 1 cut(s) 431
BtsIMutI CAGTG 2 cut(s) 240, 431
BtuMI TCGCGA 1 cut(s) 449
Cac8I GCNNGC 4 cut(s) 422, 431, 476, 525
CfoI GCGC 2 cut(s) 529, 593
Cfr10I RCCGGY 1 cut(s) 523
Cfr13I GGNCC 2 cut(s) 134, 135
CseI GACGC 1 cut(s) 544
Csp6I GTAC 2 cut(s) 112, 511
CviAII CATG 1 cut(s) 439
CviQI GTAC 2 cut(s) 112, 511
DdeI CTNAG 3 cut(s) 204, 243, 558
DpnI GATC 1 cut(s) 452
DpnII GATC 1 cut(s) 450
DraIII CACNNNGTG 1 cut(s) 127
DriI GACNNNNNGTC 1 cut(s) 307
EaeI YGGCCR 4 cut(s) 6, 18, 30, 418
Eam1104I CTCTTC 1 cut(s) 47
Eam1105I GACNNNNNGTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 47
EciI GGCGGA 1 cut(s) 495
Eco24I GRGCYC 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 311
Eco91I GGTNACC 1 cut(s) 376
EcoO65I GGTNACC 1 cut(s) 376
EcoRII CCWGG 2 cut(s) 191, 538
EcoT38I GRGCYC 1 cut(s) 138
FaeI CATG 1 cut(s) 442
FaiI YATR 3 cut(s) 17, 283, 440
FatI CATG 1 cut(s) 438
FauI CCCGC 2 cut(s) 109, 340
FblI GTMKAC 2 cut(s) 533, 549
FokI GGATG 1 cut(s) 350
FriOI GRGCYC 1 cut(s) 138
FspBI CTAG 2 cut(s) 230, 594
GlaI GCGC 2 cut(s) 528, 592
HaeII RGCGCY 1 cut(s) 594
HaeIII GGCC 7 cut(s) 8, 20, 32, 136, 420, 443, 468
HapII CCGG 3 cut(s) 89, 405, 524
HgaI GACGC 1 cut(s) 544
HhaI GCGC 2 cut(s) 529, 593
Hin1I GRCGYC 1 cut(s) 536
Hin1II CATG 1 cut(s) 442
Hin6I GCGC 2 cut(s) 527, 591
HinP1I GCGC 2 cut(s) 527, 591
HincII GTYRAC 2 cut(s) 534, 550
HindII GTYRAC 2 cut(s) 534, 550
HinfI GANTC 1 cut(s) 484
HpaII CCGG 3 cut(s) 89, 405, 524
HphI GGTGA 2 cut(s) 49, 268
Hpy166II GTNNAC 3 cut(s) 513, 534, 550
Hpy188I TCNGA 4 cut(s) 27, 207, 313, 584
Hpy188III TCNNGA 1 cut(s) 448
Hpy8I GTNNAC 3 cut(s) 513, 534, 550
Hpy99I CGWCG 6 cut(s) 280, 313, 419, 538, 554, 568
HpyAV CCTTC 3 cut(s) 184, 220, 454
HpyCH4III ACNGT 4 cut(s) 127, 256, 287, 547
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 1 cut(s) 294
HpyF3I CTNAG 3 cut(s) 204, 243, 558
HpySE526I ACGT 1 cut(s) 308
Hsp92I GRCGYC 1 cut(s) 536
Hsp92II CATG 1 cut(s) 442
HspAI GCGC 2 cut(s) 527, 591
KroI GCCGGC 1 cut(s) 523
KroNI GCCGGC 1 cut(s) 525
Kzo9I GATC 1 cut(s) 450
LmnI GCTCC 2 cut(s) 100, 517
Lsp1109I GCAGC 4 cut(s) 64, 184, 278, 420
MaeI CTAG 2 cut(s) 230, 594
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 1 cut(s) 376
MalI GATC 1 cut(s) 452
MbiI CCGCTC 1 cut(s) 603
MboI GATC 1 cut(s) 450
MboII GAAGA 4 cut(s) 34, 142, 364, 367
MhlI GDGCHC 1 cut(s) 138
MlsI TGGCCA 1 cut(s) 20
MluCI AATT 1 cut(s) 181
MluNI TGGCCA 1 cut(s) 20
MmeI TCCRAC 2 cut(s) 189, 291
Mox20I TGGCCA 1 cut(s) 20
MreI CGCCGGCG 1 cut(s) 523
MroNI GCCGGC 1 cut(s) 523
MscI TGGCCA 1 cut(s) 20
MseI TTAA 1 cut(s) 117
MslI CAYNNNNRTG 1 cut(s) 365
Msp20I TGGCCA 1 cut(s) 20
MspA1I CMGCKG 3 cut(s) 77, 299, 411
MspI CCGG 3 cut(s) 89, 405, 524
MspR9I CCNGG 3 cut(s) 89, 193, 540
MvaI CCWGG 2 cut(s) 193, 540
MvnI CGCG 2 cut(s) 275, 449
NaeI GCCGGC 1 cut(s) 525
NciI CCSGG 1 cut(s) 89
NdeII GATC 1 cut(s) 450
NgoMIV GCCGGC 1 cut(s) 523
NlaIII CATG 1 cut(s) 442
NlaIV GGNNCC 5 cut(s) 96, 136, 369, 388, 519
NmeAIII GCCGAG 2 cut(s) 198, 450
NruI TCGCGA 1 cut(s) 449
PdiI GCCGGC 1 cut(s) 525
PfeI GAWTC 1 cut(s) 484
PflMI CCANNNNNTGG 2 cut(s) 127, 144
Ple19I CGATCG 1 cut(s) 453
Psp6I CCWGG 2 cut(s) 191, 538
PspEI GGTNACC 1 cut(s) 376
PspGI CCWGG 2 cut(s) 191, 538
PspN4I GGNNCC 5 cut(s) 96, 136, 369, 388, 519
PspOMI GGGCCC 1 cut(s) 134
PspPI GGNCC 2 cut(s) 134, 135
PvuI CGATCG 1 cut(s) 453
RruI TCGCGA 1 cut(s) 449
RsaI GTAC 2 cut(s) 113, 512
RsaNI GTAC 2 cut(s) 112, 511
RseI CAYNNNNRTG 1 cut(s) 365
SalI GTCGAC 2 cut(s) 532, 548
SaqAI TTAA 1 cut(s) 117
Sau3AI GATC 1 cut(s) 450
Sau96I GGNCC 2 cut(s) 134, 135
ScrFI CCNGG 3 cut(s) 89, 193, 540
SduI GDGCHC 1 cut(s) 138
SetI ASST 8 cut(s) 16, 164, 212, 219, 293, 311, 505, 642
SgrAI CRCCGGYG 1 cut(s) 523
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 635
SmoI CTYRAG 1 cut(s) 635
Sse9I AATT 1 cut(s) 181
SspMI CTAG 2 cut(s) 230, 594
StyD4I CCNGG 3 cut(s) 87, 191, 538
TaaI ACNGT 4 cut(s) 127, 256, 287, 547
TaiI ACGT 1 cut(s) 311
TaqI TCGA 3 cut(s) 453, 533, 549
TasI AATT 1 cut(s) 181
TatI WGTACW 1 cut(s) 111
TauI GCSGC 7 cut(s) 8, 68, 95, 414, 481, 523, 591
TfiI GAWTC 1 cut(s) 484
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 2 cut(s) 247, 431
TseI GCWGC 4 cut(s) 77, 197, 291, 408
TspGWI ACGGA 2 cut(s) 530, 567
TspRI CASTG 2 cut(s) 247, 431
Van91I CCANNNNNTGG 2 cut(s) 127, 144
XcmI CCANNNNNNNNNTGG 1 cut(s) 128
XmiI GTMKAC 2 cut(s) 533, 549
XspI CTAG 2 cut(s) 230, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.