RLG00000028418

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0017359
Physical Location & Seq
Reverse (-)
22550848 .. 22551625
778 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028418

Sequence Viewer

Length: 651 bp
ATGGGGGCCAGACCCATGGCCAATCTGACGGCCATTGTCCTCCTCCTCCTCCTCATCACCATCGCCATCTCTTCCGCTGCCCCGGCCCCGGCTCCGGTGGCACCTCCCGCCACCGAGTACGTTAACCACACCGTGGGTGGACCCATCGGGTGGTTCTTCAACTCCACCTCCAACACTTCCTTCACTAATTACTCCTCCTGGGCTGCCTCTCAGACCTTCAACCTCGGCGACAATCTCGTTTTCAACACTGAGAACCAGACGGTGATTGAGACCCAAAACGCGACGACATACCGTAGCTGCACAGCGGACGACACGTCGGACGAGACCACTTTCATCTGGGGGGATGATACTGCGGGGAAGAAGACCATTGTGGTGCCATTGGTTACCGAGGGTGCCAACTACTACTTCTCCGGCAGCGGCGACGGCCAGCAGTGCCAGCAAGGCATGGCCTTCGCGATCGAAGTCAATCACGGCCTCGGCTTGCCGCCGATTCTCAATCAGCCTCCACCTCCTCCGTACACGGTGCCACCGGCTCAGTCGCAGCCTGGAACTGTCGACGGAACTCAGCCGTCGGGGAATAGTGGGTTCAGAAGCGGCGCTAGTTTGAGCGGAGGGTTGTTAGTTGCGTTTATGCTAGTTCTCAATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

217

Amino Acids

22.54

Weight (kDa)

4.24

Isoelectric Point (pI)

44.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 59 - 149 6.3e-15 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017359)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12470
malus_domestica MD02G1199000.v1.1
prunus_persica Prupe.2G149300_v2.0.a1
pyrus_communis pycom02g16300
rosa_chinensis RchiOBHm_Chr1g0351281
rosa_laevigata RLG00000028418
rosa_roxburghii Rroxscaffold_4G00303910
rosa_rugosa Rorug01G0217500
rosa_samantha Rh1AG231900 Rh1BG202100 Rh1CG216600 Rh1DG229400
rosa_wichuraiana Rw1G020190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 100, 373, 392, 523
AccB7I CCANNNNNTGG 2 cut(s) 133, 150
AccBSI CCGCTC 1 cut(s) 609
AccI GTMKAC 1 cut(s) 555
AccII CGCG 2 cut(s) 281, 455
AciI CCGC 8 cut(s) 75, 108, 305, 353, 417, 485, 594, 609
AcoI YGGCCR 3 cut(s) 18, 30, 424
AdeI CACNNNGTG 1 cut(s) 133
AfaI GTAC 2 cut(s) 119, 518
AfiI CCNNNNNNNGG 4 cut(s) 88, 94, 133, 150
AflIII ACRYGT 1 cut(s) 312
AgsI TTSAA 3 cut(s) 160, 220, 244
AhdI GACNNNNNGTC 1 cut(s) 313
AjiI CACGTC 1 cut(s) 315
AjnI CCWGG 2 cut(s) 197, 544
AjuI GAANNNNNNNTTGG 4 cut(s) 164, 196, 389, 421
AluBI AGCT 1 cut(s) 297
AluI AGCT 1 cut(s) 297
Alw26I GTCTC 2 cut(s) 263, 317
AoxI GGCC 7 cut(s) 6, 18, 30, 84, 424, 447, 472
ApeKI GCWGC 5 cut(s) 77, 203, 297, 414, 541
AspLEI GCGC 1 cut(s) 599
AspS9I GGNCC 3 cut(s) 6, 85, 140
AsuC2I CCSGG 2 cut(s) 83, 89
AsuHPI GGTGA 2 cut(s) 49, 274
AvaII GGWCC 1 cut(s) 140
BalI TGGCCA 1 cut(s) 20
BanI GGYRCC 4 cut(s) 100, 373, 392, 523
BbsI GAAGAC 1 cut(s) 368
BbvI GCAGC 5 cut(s) 64, 190, 284, 426, 553
BccI CCATC 3 cut(s) 68, 74, 152
BceAI ACGGC 4 cut(s) 45, 439, 487, 553
BcgI CGANNNNNNTGC 2 cut(s) 433, 467
BciT130I CCWGG 2 cut(s) 199, 546
BcnI CCSGG 2 cut(s) 83, 89
BcoDI GTCTC 2 cut(s) 263, 317
BfaI CTAG 2 cut(s) 600, 635
BfoI RGCGCY 1 cut(s) 600
BglI GCCNNNNNGGC 1 cut(s) 441
BisI GCNGC 8 cut(s) 78, 204, 298, 415, 418, 485, 542, 595
BlsI GCNGC 8 cut(s) 79, 205, 299, 416, 419, 486, 543, 596
Bme1390I CCNGG 4 cut(s) 83, 89, 199, 546
Bme18I GGWCC 1 cut(s) 140
BmeRI GACNNNNNGTC 1 cut(s) 313
BmgBI CACGTC 1 cut(s) 315
BmgT120I GGNCC 3 cut(s) 6, 85, 140
BmiI GGNNCC 8 cut(s) 7, 87, 93, 102, 142, 375, 394, 525
BmrFI CCNGG 4 cut(s) 83, 89, 199, 546
BpiI GAAGAC 1 cut(s) 368
BpuMI CCSGG 2 cut(s) 83, 89
BsaI GGTCTC 2 cut(s) 263, 317
BsaJI CCNNGG 8 cut(s) 15, 81, 87, 132, 198, 223, 387, 475
BsaWI WCCGGW 1 cut(s) 94
BsaXI ACNNNNNCTCC 4 cut(s) 152, 182, 392, 422
Bsc4I CCNNNNNNNGG 4 cut(s) 88, 94, 133, 150
Bse118I RCCGGY 1 cut(s) 529
BseBI CCWGG 2 cut(s) 199, 546
BseDI CCNNGG 8 cut(s) 15, 81, 87, 132, 198, 223, 387, 475
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 4 cut(s) 88, 94, 133, 150
BseMII CTCAG 4 cut(s) 224, 240, 548, 578
BseRI GAGGAG 6 cut(s) 32, 35, 38, 41, 184, 501
BseXI GCAGC 5 cut(s) 64, 190, 284, 426, 553
BsgI GTGCAG 1 cut(s) 283
Bsh1236I CGCG 2 cut(s) 281, 455
Bsh1285I CGRYCG 1 cut(s) 459
BshFI GGCC 7 cut(s) 8, 20, 32, 86, 426, 449, 474
BshNI GGYRCC 4 cut(s) 100, 373, 392, 523
BsiEI CGRYCG 1 cut(s) 459
BsiSI CCGG 5 cut(s) 83, 89, 95, 411, 530
BslI CCNNNNNNNGG 4 cut(s) 88, 94, 133, 150
BsmAI GTCTC 2 cut(s) 263, 317
BsnI GGCC 7 cut(s) 8, 20, 32, 86, 426, 449, 474
Bso31I GGTCTC 2 cut(s) 263, 317
Bsp143I GATC 1 cut(s) 456
Bsp19I CCATGG 1 cut(s) 15
Bsp68I TCGCGA 1 cut(s) 455
BspACI CCGC 8 cut(s) 75, 108, 305, 353, 417, 485, 594, 609
BspANI GGCC 7 cut(s) 8, 20, 32, 86, 426, 449, 474
BspCNI CTCAG 4 cut(s) 223, 241, 547, 577
BspFNI CGCG 2 cut(s) 281, 455
BspLI GGNNCC 8 cut(s) 7, 87, 93, 102, 142, 375, 394, 525
BspT107I GGYRCC 4 cut(s) 100, 373, 392, 523
BspTNI GGTCTC 2 cut(s) 263, 317
BsrBI CCGCTC 1 cut(s) 609
BsrFI RCCGGY 1 cut(s) 529
BssAI RCCGGY 1 cut(s) 529
BssECI CCNNGG 8 cut(s) 15, 81, 87, 132, 198, 223, 387, 475
BssMI GATC 1 cut(s) 456
BssT1I CCWWGG 1 cut(s) 15
Bst2UI CCWGG 2 cut(s) 199, 546
Bst4CI ACNGT 5 cut(s) 133, 262, 293, 523, 553
Bst6I CTCTTC 1 cut(s) 76
BstC8I GCNNGC 3 cut(s) 428, 437, 482
BstDEI CTNAG 4 cut(s) 210, 249, 534, 564
BstDSI CCRYGG 2 cut(s) 15, 132
BstEII GGTNACC 1 cut(s) 382
BstF5I GGATG 1 cut(s) 349
BstFNI CGCG 2 cut(s) 281, 455
BstH2I RGCGCY 1 cut(s) 600
BstHHI GCGC 1 cut(s) 599
BstKTI GATC 1 cut(s) 459
BstMAI GTCTC 2 cut(s) 263, 317
BstMBI GATC 1 cut(s) 456
BstMCI CGRYCG 1 cut(s) 459
BstMWI GCNNNNNNNGC 7 cut(s) 83, 98, 107, 423, 432, 436, 441
BstNI CCWGG 2 cut(s) 199, 546
BstPI GGTNACC 1 cut(s) 382
BstSCI CCNGG 4 cut(s) 81, 87, 197, 544
BstUI CGCG 2 cut(s) 281, 455
BstV1I GCAGC 5 cut(s) 64, 190, 284, 426, 553
BstV2I GAAGAC 1 cut(s) 368
BstXI CCANNNNNNTGG 1 cut(s) 16
BsuRI GGCC 7 cut(s) 8, 20, 32, 86, 426, 449, 474
BtgI CCRYGG 2 cut(s) 15, 132
BtgZI GCGATG 1 cut(s) 46
BtrI CACGTC 1 cut(s) 315
BtsCI GGATG 1 cut(s) 349
BtsI GCAGTG 1 cut(s) 437
BtsIMutI CAGTG 2 cut(s) 246, 437
BtuMI TCGCGA 1 cut(s) 455
Cac8I GCNNGC 3 cut(s) 428, 437, 482
CfoI GCGC 1 cut(s) 599
Cfr10I RCCGGY 1 cut(s) 529
Cfr13I GGNCC 3 cut(s) 6, 85, 140
Csp6I GTAC 2 cut(s) 118, 517
CviAII CATG 2 cut(s) 16, 445
CviQI GTAC 2 cut(s) 118, 517
DdeI CTNAG 4 cut(s) 210, 249, 534, 564
DpnI GATC 1 cut(s) 458
DpnII GATC 1 cut(s) 456
DraIII CACNNNGTG 1 cut(s) 133
DriI GACNNNNNGTC 1 cut(s) 313
EaeI YGGCCR 3 cut(s) 18, 30, 424
Eam1104I CTCTTC 1 cut(s) 76
Eam1105I GACNNNNNGTC 1 cut(s) 313
EarI CTCTTC 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 15
Eco31I GGTCTC 2 cut(s) 263, 317
Eco47I GGWCC 1 cut(s) 140
Eco91I GGTNACC 1 cut(s) 382
EcoO65I GGTNACC 1 cut(s) 382
EcoRII CCWGG 2 cut(s) 197, 544
EcoT14I CCWWGG 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 2 cut(s) 19, 448
FaiI YATR 4 cut(s) 17, 289, 446, 632
FatI CATG 2 cut(s) 15, 444
FauI CCCGC 2 cut(s) 115, 346
FblI GTMKAC 1 cut(s) 555
Fnu4HI GCNGC 8 cut(s) 78, 204, 298, 415, 418, 485, 542, 595
FokI GGATG 1 cut(s) 356
Fsp4HI GCNGC 8 cut(s) 78, 204, 298, 415, 418, 485, 542, 595
FspBI CTAG 2 cut(s) 600, 635
GlaI GCGC 1 cut(s) 598
GluI GCNGC 8 cut(s) 78, 204, 298, 415, 418, 485, 542, 595
HaeII RGCGCY 1 cut(s) 600
HaeIII GGCC 7 cut(s) 8, 20, 32, 86, 426, 449, 474
HapII CCGG 5 cut(s) 83, 89, 95, 411, 530
HhaI GCGC 1 cut(s) 599
Hin1II CATG 2 cut(s) 19, 448
Hin6I GCGC 1 cut(s) 597
HinP1I GCGC 1 cut(s) 597
HincII GTYRAC 2 cut(s) 124, 556
HindII GTYRAC 2 cut(s) 124, 556
HinfI GANTC 1 cut(s) 490
HpaI GTTAAC 1 cut(s) 124
HpaII CCGG 5 cut(s) 83, 89, 95, 411, 530
HphI GGTGA 2 cut(s) 49, 274
Hpy166II GTNNAC 4 cut(s) 124, 140, 519, 556
Hpy188I TCNGA 4 cut(s) 27, 213, 319, 590
Hpy188III TCNNGA 1 cut(s) 454
Hpy8I GTNNAC 4 cut(s) 124, 140, 519, 556
Hpy99I CGWCG 5 cut(s) 286, 319, 425, 560, 574
HpyAV CCTTC 3 cut(s) 190, 226, 460
HpyCH4III ACNGT 5 cut(s) 133, 262, 293, 523, 553
HpyCH4IV ACGT 2 cut(s) 120, 314
HpyCH4V TGCA 1 cut(s) 300
HpyF10VI GCNNNNNNNGC 7 cut(s) 83, 98, 107, 423, 432, 436, 441
HpyF3I CTNAG 4 cut(s) 210, 249, 534, 564
HpySE526I ACGT 2 cut(s) 120, 314
Hsp92II CATG 2 cut(s) 19, 448
HspAI GCGC 1 cut(s) 597
KspAI GTTAAC 1 cut(s) 124
Kzo9I GATC 1 cut(s) 456
LmnI GCTCC 1 cut(s) 97
Lsp1109I GCAGC 5 cut(s) 64, 190, 284, 426, 553
MaeI CTAG 2 cut(s) 600, 635
MaeII ACGT 2 cut(s) 120, 314
MaeIII GTNAC 1 cut(s) 382
MalI GATC 1 cut(s) 458
MbiI CCGCTC 1 cut(s) 609
MboI GATC 1 cut(s) 456
MboII GAAGA 4 cut(s) 63, 148, 370, 373
MlsI TGGCCA 1 cut(s) 20
MluCI AATT 1 cut(s) 187
MluNI TGGCCA 1 cut(s) 20
MmeI TCCRAC 2 cut(s) 195, 297
Mox20I TGGCCA 1 cut(s) 20
MscI TGGCCA 1 cut(s) 20
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 371
Msp20I TGGCCA 1 cut(s) 20
MspA1I CMGCKG 3 cut(s) 77, 305, 417
MspI CCGG 5 cut(s) 83, 89, 95, 411, 530
MspR9I CCNGG 4 cut(s) 83, 89, 199, 546
MvaI CCWGG 2 cut(s) 199, 546
MvnI CGCG 2 cut(s) 281, 455
MwoI GCNNNNNNNGC 7 cut(s) 83, 98, 107, 423, 432, 436, 441
NciI CCSGG 2 cut(s) 83, 89
NcoI CCATGG 1 cut(s) 15
NdeII GATC 1 cut(s) 456
NlaIII CATG 2 cut(s) 19, 448
NlaIV GGNNCC 8 cut(s) 7, 87, 93, 102, 142, 375, 394, 525
NmeAIII GCCGAG 2 cut(s) 204, 456
NruI TCGCGA 1 cut(s) 455
PfeI GAWTC 1 cut(s) 490
PflMI CCANNNNNTGG 2 cut(s) 133, 150
PkrI GCNGC 8 cut(s) 79, 205, 299, 416, 419, 486, 543, 596
Ple19I CGATCG 1 cut(s) 459
Psp6I CCWGG 2 cut(s) 197, 544
PspEI GGTNACC 1 cut(s) 382
PspGI CCWGG 2 cut(s) 197, 544
PspN4I GGNNCC 8 cut(s) 7, 87, 93, 102, 142, 375, 394, 525
PspPI GGNCC 3 cut(s) 6, 85, 140
PvuI CGATCG 1 cut(s) 459
RruI TCGCGA 1 cut(s) 455
RsaI GTAC 2 cut(s) 119, 518
RsaNI GTAC 2 cut(s) 118, 517
RseI CAYNNNNRTG 1 cut(s) 371
SalI GTCGAC 1 cut(s) 554
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 8 cut(s) 78, 204, 298, 415, 418, 485, 542, 595
Sau3AI GATC 1 cut(s) 456
Sau96I GGNCC 3 cut(s) 6, 85, 140
ScrFI CCNGG 4 cut(s) 83, 89, 199, 546
SetI ASST 8 cut(s) 106, 123, 170, 218, 225, 299, 317, 511
SinI GGWCC 1 cut(s) 140
SmiMI CAYNNNNRTG 1 cut(s) 371
Sse9I AATT 1 cut(s) 187
SsiI CCGC 8 cut(s) 75, 108, 305, 353, 417, 485, 594, 609
SspMI CTAG 2 cut(s) 600, 635
StyD4I CCNGG 4 cut(s) 81, 87, 197, 544
StyI CCWWGG 1 cut(s) 15
TaaI ACNGT 5 cut(s) 133, 262, 293, 523, 553
TaiI ACGT 2 cut(s) 123, 317
TaqI TCGA 2 cut(s) 459, 555
TasI AATT 1 cut(s) 187
TauI GCSGC 3 cut(s) 420, 487, 597
TfiI GAWTC 1 cut(s) 490
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 2 cut(s) 253, 437
TseI GCWGC 5 cut(s) 77, 203, 297, 414, 541
TspDTI ATGAA 1 cut(s) 322
TspGWI ACGGA 2 cut(s) 504, 573
TspRI CASTG 2 cut(s) 253, 437
Van91I CCANNNNNTGG 2 cut(s) 133, 150
VpaK11BI GGWCC 1 cut(s) 140
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 555
XspI CTAG 2 cut(s) 600, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.