MD02G1199000.v1.1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0017359
Physical Location & Seq
Reverse (-)
19549384 .. 19550603
1220 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1199000.v1.1.491

Sequence Viewer

Length: 654 bp
ATGAAATCCGCTAATCCGACGGCCATTATGCTTCTCATCGCCATCACTGCCACCGCTGCCGCCGCCGCCACACCTACGGCAACCCAATACGTCAATCACACCGTGGGCGGAGCCACCGGCTGGTTCTTCAACTCCACCAGCAACTCCTCCTTCACAAATTACTCCTCTTGGGCCGCCACTCAGACCTTCAATCTCGGCGACTACCTCATCTTCAATACTAGCACAAACCAGACGGTGATCGAAACCTACAACCAAACGACATACCGTAGCTGCTCAATGGACGACGCGTCGGACGACGACACGTTCGAGTACGGCGGCGGAAGCAATGCATTCGGAGATTCGCAGGTTATGGCCGTGCCGTTGACCCATAAGGGTCTCACATACTACTTCTCCAGCGCCGGAGACGGCGTACAGTGCCAGCGTGGCATGGCATTCGAGATCCAAGTGAATCAAGGGCTCGGATTGCCGCCGGTTCTCATGCAGCCTCCACCTCCGCCGTACACTTCCCCGCCGCCTGGTTCCGAGTCGGCTCAGACGCCGCCTGGTACTGTCGCGGAAACTCCGCCGAAGGGGAATGGGGCATTGAGAAACTGTCCTAACGTGCGCGAGGGGTTATTTGGGTTTCTTGCTTTGCTGCTTCTTGTTAGGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

218

Amino Acids

22.96

Weight (kDa)

4.64

Isoelectric Point (pI)

31.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 49 - 143 5.7e-13 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017359)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12470
malus_domestica MD02G1199000.v1.1
prunus_persica Prupe.2G149300_v2.0.a1
pyrus_communis pycom02g16300
rosa_chinensis RchiOBHm_Chr1g0351281
rosa_laevigata RLG00000028418
rosa_roxburghii Rroxscaffold_4G00303910
rosa_rugosa Rorug01G0217500
rosa_samantha Rh1AG231900 Rh1BG202100 Rh1CG216600 Rh1DG229400
rosa_wichuraiana Rw1G020190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 334
AccB7I CCANNNNNTGG 1 cut(s) 120
AccII CGCG 3 cut(s) 287, 554, 606
AclWI GGATC 1 cut(s) 433
AcoI YGGCCR 2 cut(s) 21, 351
AcyI GRCGYC 1 cut(s) 536
AdeI CACNNNGTG 1 cut(s) 103
AfaI GTAC 4 cut(s) 311, 411, 500, 547
AfiI CCNNNNNNNGG 3 cut(s) 120, 515, 569
AflIII ACRYGT 2 cut(s) 285, 300
AgsI TTSAA 3 cut(s) 130, 190, 214
AhdI GACNNNNNGTC 1 cut(s) 286
AjnI CCWGG 2 cut(s) 514, 541
AluBI AGCT 1 cut(s) 270
AluI AGCT 1 cut(s) 270
Alw26I GTCTC 2 cut(s) 380, 396
AlwI GGATC 1 cut(s) 433
AoxI GGCC 3 cut(s) 21, 171, 351
ApeKI GCWGC 4 cut(s) 56, 270, 481, 634
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AspLEI GCGC 2 cut(s) 398, 606
AspS9I GGNCC 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 247
BanII GRGCYC 1 cut(s) 459
BbvI GCAGC 4 cut(s) 43, 257, 493, 621
BccI CCATC 1 cut(s) 50
BceAI ACGGC 7 cut(s) 36, 93, 328, 338, 343, 421, 481
BcgI CGANNNNNNTGC 4 cut(s) 313, 347, 415, 449
BciT130I CCWGG 2 cut(s) 516, 543
BcoDI GTCTC 2 cut(s) 380, 396
BfaI CTAG 1 cut(s) 219
BfoI RGCGCY 1 cut(s) 399
BfuAI ACCTGC 1 cut(s) 334
BglI GCCNNNNNGGC 1 cut(s) 423
Bme1390I CCNGG 2 cut(s) 516, 543
BmeRI GACNNNNNGTC 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 171
BmiI GGNNCC 2 cut(s) 112, 520
BmrFI CCNGG 2 cut(s) 516, 543
BpmI CTGGAG 1 cut(s) 376
BsaHI GRCGYC 1 cut(s) 536
BsaI GGTCTC 1 cut(s) 380
BsaJI CCNNGG 1 cut(s) 102
BsaXI ACNNNNNCTCC 4 cut(s) 374, 393, 404, 423
Bsc4I CCNNNNNNNGG 3 cut(s) 120, 515, 569
Bse118I RCCGGY 2 cut(s) 116, 469
Bse3DI GCAATG 1 cut(s) 331
BseBI CCWGG 2 cut(s) 516, 543
BseDI CCNNGG 1 cut(s) 102
BseLI CCNNNNNNNGG 3 cut(s) 120, 515, 569
BseMI GCAATG 1 cut(s) 331
BseMII CTCAG 2 cut(s) 194, 545
BseRI GAGGAG 2 cut(s) 136, 154
BseXI GCAGC 4 cut(s) 43, 257, 493, 621
Bsh1236I CGCG 3 cut(s) 287, 554, 606
BshFI GGCC 3 cut(s) 23, 173, 353
BsiSI CCGG 3 cut(s) 117, 399, 470
BslI CCNNNNNNNGG 3 cut(s) 120, 515, 569
BsmAI GTCTC 2 cut(s) 380, 396
BsmBI CGTCTC 1 cut(s) 396
BsmI GAATGC 2 cut(s) 329, 431
BsnI GGCC 3 cut(s) 23, 173, 353
Bso31I GGTCTC 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 459
Bsp143I GATC 2 cut(s) 237, 438
BspANI GGCC 3 cut(s) 23, 173, 353
BspCNI CTCAG 2 cut(s) 193, 544
BspFNI CGCG 3 cut(s) 287, 554, 606
BspLI GGNNCC 2 cut(s) 112, 520
BspMI ACCTGC 1 cut(s) 334
BspPI GGATC 1 cut(s) 433
BspTNI GGTCTC 1 cut(s) 380
BsrDI GCAATG 1 cut(s) 331
BsrFI RCCGGY 2 cut(s) 116, 469
BssAI RCCGGY 2 cut(s) 116, 469
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 2 cut(s) 237, 438
BssNI GRCGYC 1 cut(s) 536
Bst2UI CCWGG 2 cut(s) 516, 543
Bst4CI ACNGT 6 cut(s) 103, 235, 266, 414, 550, 593
BstACI GRCGYC 1 cut(s) 536
BstC8I GCNNGC 1 cut(s) 419
BstDEI CTNAG 2 cut(s) 180, 531
BstDSI CCRYGG 1 cut(s) 102
BstFNI CGCG 3 cut(s) 287, 554, 606
BstH2I RGCGCY 1 cut(s) 399
BstHHI GCGC 2 cut(s) 398, 606
BstKTI GATC 2 cut(s) 240, 441
BstMAI GTCTC 2 cut(s) 380, 396
BstMBI GATC 2 cut(s) 237, 438
BstMWI GCNNNNNNNGC 8 cut(s) 47, 56, 62, 65, 321, 414, 423, 463
BstNI CCWGG 2 cut(s) 516, 543
BstSCI CCNGG 2 cut(s) 514, 541
BstUI CGCG 3 cut(s) 287, 554, 606
BstV1I GCAGC 4 cut(s) 43, 257, 493, 621
BstX2I RGATCY 1 cut(s) 438
BstYI RGATCY 1 cut(s) 438
BsuRI GGCC 3 cut(s) 23, 173, 353
BtgI CCRYGG 1 cut(s) 102
BtgZI GCGATG 1 cut(s) 22
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 2 cut(s) 45, 419
BveI ACCTGC 1 cut(s) 334
Cac8I GCNNGC 1 cut(s) 419
CfoI GCGC 2 cut(s) 398, 606
Cfr10I RCCGGY 2 cut(s) 116, 469
Cfr13I GGNCC 1 cut(s) 171
CseI GACGC 3 cut(s) 276, 293, 544
Csp6I GTAC 4 cut(s) 310, 410, 499, 546
CviAII CATG 2 cut(s) 427, 478
CviQI GTAC 4 cut(s) 310, 410, 499, 546
DdeI CTNAG 2 cut(s) 180, 531
DpnI GATC 2 cut(s) 239, 440
DpnII GATC 2 cut(s) 237, 438
DraIII CACNNNGTG 1 cut(s) 103
DriI GACNNNNNGTC 1 cut(s) 286
EaeI YGGCCR 2 cut(s) 21, 351
Eam1105I GACNNNNNGTC 1 cut(s) 286
EciI GGCGGA 4 cut(s) 123, 333, 483, 552
Eco24I GRGCYC 1 cut(s) 459
Eco31I GGTCTC 1 cut(s) 380
EcoRII CCWGG 2 cut(s) 514, 541
EcoT22I ATGCAT 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 459
Esp3I CGTCTC 1 cut(s) 396
FaeI CATG 2 cut(s) 430, 481
FaiI YATR 7 cut(s) 29, 262, 350, 369, 382, 428, 479
FatI CATG 2 cut(s) 426, 477
FauI CCCGC 1 cut(s) 516
FriOI GRGCYC 1 cut(s) 459
FspBI CTAG 1 cut(s) 219
GlaI GCGC 2 cut(s) 397, 605
GsuI CTGGAG 1 cut(s) 376
HaeII RGCGCY 1 cut(s) 399
HaeIII GGCC 3 cut(s) 23, 173, 353
HapII CCGG 3 cut(s) 117, 399, 470
HgaI GACGC 3 cut(s) 276, 293, 544
HhaI GCGC 2 cut(s) 398, 606
Hin1I GRCGYC 1 cut(s) 536
Hin1II CATG 2 cut(s) 430, 481
Hin6I GCGC 2 cut(s) 396, 604
HinP1I GCGC 2 cut(s) 396, 604
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HinfI GANTC 3 cut(s) 338, 448, 524
HpaII CCGG 3 cut(s) 117, 399, 470
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 2 cut(s) 363, 501
Hpy188I TCNGA 7 cut(s) 18, 183, 292, 335, 461, 523, 534
Hpy188III TCNNGA 1 cut(s) 436
Hpy8I GTNNAC 2 cut(s) 363, 501
Hpy99I CGWCG 4 cut(s) 22, 287, 292, 299
HpyAV CCTTC 3 cut(s) 160, 196, 562
HpyCH4III ACNGT 6 cut(s) 103, 235, 266, 414, 550, 593
HpyCH4IV ACGT 3 cut(s) 90, 302, 600
HpyCH4V TGCA 2 cut(s) 329, 481
HpyF10VI GCNNNNNNNGC 8 cut(s) 47, 56, 62, 65, 321, 414, 423, 463
HpyF3I CTNAG 2 cut(s) 180, 531
HpySE526I ACGT 3 cut(s) 90, 302, 600
Hsp92I GRCGYC 1 cut(s) 536
Hsp92II CATG 2 cut(s) 430, 481
HspAI GCGC 2 cut(s) 396, 604
Kzo9I GATC 2 cut(s) 237, 438
LmnI GCTCC 1 cut(s) 110
Lsp1109I GCAGC 4 cut(s) 43, 257, 493, 621
MaeI CTAG 1 cut(s) 219
MaeII ACGT 3 cut(s) 90, 302, 600
MalI GATC 2 cut(s) 239, 440
MboI GATC 2 cut(s) 237, 438
MboII GAAGA 2 cut(s) 118, 202
MflI RGATCY 1 cut(s) 438
MhlI GDGCHC 1 cut(s) 459
MluCI AATT 1 cut(s) 157
MluI ACGCGT 1 cut(s) 285
MlyI GAGTC 1 cut(s) 533
MmeI TCCRAC 2 cut(s) 41, 270
MnlI CCTC 6 cut(s) 157, 175, 215, 495, 501, 601
Mph1103I ATGCAT 1 cut(s) 331
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 3 cut(s) 117, 399, 470
MspR9I CCNGG 2 cut(s) 516, 543
Mva1269I GAATGC 2 cut(s) 329, 431
MvaI CCWGG 2 cut(s) 516, 543
MvnI CGCG 3 cut(s) 287, 554, 606
MwoI GCNNNNNNNGC 8 cut(s) 47, 56, 62, 65, 321, 414, 423, 463
NdeII GATC 2 cut(s) 237, 438
NlaIII CATG 2 cut(s) 430, 481
NlaIV GGNNCC 2 cut(s) 112, 520
NmeAIII GCCGAG 1 cut(s) 174
NsiI ATGCAT 1 cut(s) 331
PcsI WCGNNNNNNNCGW 2 cut(s) 291, 303
PctI GAATGC 2 cut(s) 329, 431
PfeI GAWTC 2 cut(s) 338, 448
PflMI CCANNNNNTGG 1 cut(s) 120
PleI GAGTC 1 cut(s) 532
PpsI GAGTC 1 cut(s) 532
Psp6I CCWGG 2 cut(s) 514, 541
PspGI CCWGG 2 cut(s) 514, 541
PspN4I GGNNCC 2 cut(s) 112, 520
PspPI GGNCC 1 cut(s) 171
PsuI RGATCY 1 cut(s) 438
RsaI GTAC 4 cut(s) 311, 411, 500, 547
RsaNI GTAC 4 cut(s) 310, 410, 499, 546
Sau3AI GATC 2 cut(s) 237, 438
Sau96I GGNCC 1 cut(s) 171
SchI GAGTC 1 cut(s) 533
ScrFI CCNGG 2 cut(s) 516, 543
SduI GDGCHC 1 cut(s) 459
Sse9I AATT 1 cut(s) 157
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 2 cut(s) 514, 541
TaaI ACNGT 6 cut(s) 103, 235, 266, 414, 550, 593
TaiI ACGT 3 cut(s) 93, 305, 603
TaqI TCGA 3 cut(s) 240, 306, 435
TasI AATT 1 cut(s) 157
TauI GCSGC 8 cut(s) 62, 65, 68, 176, 318, 469, 514, 541
TfiI GAWTC 2 cut(s) 338, 448
TscAI CASTG 2 cut(s) 52, 419
TseI GCWGC 4 cut(s) 56, 270, 481, 634
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 52, 419
Van91I CCANNNNNTGG 1 cut(s) 120
XspI CTAG 1 cut(s) 219
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.