pycom02g16300

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0017359
Physical Location & Seq
Reverse (-)
13430853 .. 13431230
378 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g16300.1

Sequence Viewer

Length: 378 bp
ATGGACGACGCGTTGGACGACGACACGTTCGAGTACGGCGGCGGAAGCAACGCGTTCGGAGATTCGCAGGTTATAGCCGTGCCGTTGACCCTTAAGGGTCTCACGTACTACTTCTCCGGCGCCGGAGACGGCGTACAGTGCCAGCGTGGCATGGCATTCGACATCCAAGTGAATCAAGGGCTCGGATTGCCGCCGGTTCTCAGTCAGCCTCCACCTCCGCCGTACACTGCCCCGCCGCCTGGTTCCGAGTCGGCTCAGACGCCGCCTGGTACTGTCGCGGAAACTCCGCCGAAGGGGAATGGGGCATTGAGAAACGGTGCTAACGTGCGCGAGGGGTTATTTGGGTTTCTTGCTTTGCTGCTTCTTGTTAGGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

126

Amino Acids

12.92

Weight (kDa)

4.21

Isoelectric Point (pI)

33.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017359)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12470
malus_domestica MD02G1199000.v1.1
prunus_persica Prupe.2G149300_v2.0.a1
pyrus_communis pycom02g16300
rosa_chinensis RchiOBHm_Chr1g0351281
rosa_laevigata RLG00000028418
rosa_roxburghii Rroxscaffold_4G00303910
rosa_rugosa Rorug01G0217500
rosa_samantha Rh1AG231900 Rh1BG202100 Rh1CG216600 Rh1DG229400
rosa_wichuraiana Rw1G020190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 58
AccB1I GGYRCC 1 cut(s) 119
AccII CGCG 4 cut(s) 11, 53, 278, 330
AciI CCGC 9 cut(s) 39, 42, 191, 218, 233, 236, 263, 278, 287
AcyI GRCGYC 2 cut(s) 120, 260
AfaI GTAC 5 cut(s) 35, 107, 135, 224, 271
AfiI CCNNNNNNNGG 2 cut(s) 239, 293
AflII CTTAAG 1 cut(s) 92
AflIII ACRYGT 3 cut(s) 9, 24, 51
AjnI CCWGG 2 cut(s) 238, 265
Alw26I GTCTC 2 cut(s) 104, 120
ApeKI GCWGC 1 cut(s) 358
ArsI GACNNNNNNTTYG 2 cut(s) 11, 43
AspLEI GCGC 2 cut(s) 122, 330
BanI GGYRCC 1 cut(s) 119
BanII GRGCYC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 345
BceAI ACGGC 5 cut(s) 52, 62, 67, 145, 205
BcgI CGANNNNNNTGC 4 cut(s) 37, 71, 139, 173
BciT130I CCWGG 2 cut(s) 240, 267
BcoDI GTCTC 2 cut(s) 104, 120
BfoI RGCGCY 1 cut(s) 123
BfrI CTTAAG 1 cut(s) 92
BfuAI ACCTGC 1 cut(s) 58
BglI GCCNNNNNGGC 1 cut(s) 147
BisI GCNGC 5 cut(s) 40, 191, 236, 263, 359
BlsI GCNGC 5 cut(s) 41, 192, 237, 264, 360
Bme1390I CCNGG 2 cut(s) 240, 267
BmiI GGNNCC 2 cut(s) 121, 244
BmrFI CCNGG 2 cut(s) 240, 267
BsaAI YACGTR 1 cut(s) 105
BsaHI GRCGYC 2 cut(s) 120, 260
BsaI GGTCTC 1 cut(s) 104
BsaXI ACNNNNNCTCC 4 cut(s) 98, 117, 128, 147
Bsc4I CCNNNNNNNGG 2 cut(s) 239, 293
Bse118I RCCGGY 1 cut(s) 193
BseBI CCWGG 2 cut(s) 240, 267
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 239, 293
BseMII CTCAG 2 cut(s) 214, 269
BseXI GCAGC 1 cut(s) 345
Bsh1236I CGCG 4 cut(s) 11, 53, 278, 330
BshNI GGYRCC 1 cut(s) 119
BsiSI CCGG 3 cut(s) 117, 123, 194
BslI CCNNNNNNNGG 2 cut(s) 239, 293
BsmAI GTCTC 2 cut(s) 104, 120
BsmBI CGTCTC 1 cut(s) 120
BsmI GAATGC 1 cut(s) 155
Bso31I GGTCTC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 183
BspACI CCGC 9 cut(s) 39, 42, 191, 218, 233, 236, 263, 278, 287
BspCNI CTCAG 2 cut(s) 213, 268
BspFNI CGCG 4 cut(s) 11, 53, 278, 330
BspLI GGNNCC 2 cut(s) 121, 244
BspMI ACCTGC 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 119
BspTI CTTAAG 1 cut(s) 92
BspTNI GGTCTC 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 193
BssAI RCCGGY 1 cut(s) 193
BssNI GRCGYC 2 cut(s) 120, 260
Bst2UI CCWGG 2 cut(s) 240, 267
Bst4CI ACNGT 3 cut(s) 138, 274, 317
BstACI GRCGYC 2 cut(s) 120, 260
BstAFI CTTAAG 1 cut(s) 92
BstBAI YACGTR 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 2 cut(s) 200, 255
BstF5I GGATG 1 cut(s) 162
BstFNI CGCG 4 cut(s) 11, 53, 278, 330
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 2 cut(s) 122, 330
BstMAI GTCTC 2 cut(s) 104, 120
BstMWI GCNNNNNNNGC 4 cut(s) 45, 138, 147, 187
BstNI CCWGG 2 cut(s) 240, 267
BstSCI CCNGG 2 cut(s) 238, 265
BstUI CGCG 4 cut(s) 11, 53, 278, 330
BstV1I GCAGC 1 cut(s) 345
BtsCI GGATG 1 cut(s) 162
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 143, 225
BveI ACCTGC 1 cut(s) 58
Cac8I GCNNGC 1 cut(s) 143
CfoI GCGC 2 cut(s) 122, 330
Cfr10I RCCGGY 1 cut(s) 193
CseI GACGC 2 cut(s) 17, 268
Csp6I GTAC 5 cut(s) 34, 106, 134, 223, 270
CviAII CATG 1 cut(s) 151
CviJI RGCY 5 cut(s) 77, 181, 208, 254, 373
CviKI_1 RGCY 5 cut(s) 77, 181, 208, 254, 373
CviQI GTAC 5 cut(s) 34, 106, 134, 223, 270
DdeI CTNAG 2 cut(s) 200, 255
DinI GGCGCC 1 cut(s) 121
EciI GGCGGA 3 cut(s) 57, 207, 276
Eco24I GRGCYC 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 104
EcoRII CCWGG 2 cut(s) 238, 265
EcoT38I GRGCYC 1 cut(s) 183
EgeI GGCGCC 1 cut(s) 121
EheI GGCGCC 1 cut(s) 121
Esp3I CGTCTC 1 cut(s) 120
FaeI CATG 1 cut(s) 154
FaiI YATR 2 cut(s) 74, 152
FatI CATG 1 cut(s) 150
FauI CCCGC 1 cut(s) 240
Fnu4HI GCNGC 5 cut(s) 40, 191, 236, 263, 359
FokI GGATG 1 cut(s) 149
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 5 cut(s) 40, 191, 236, 263, 359
GlaI GCGC 2 cut(s) 121, 329
GluI GCNGC 5 cut(s) 40, 191, 236, 263, 359
HaeII RGCGCY 1 cut(s) 123
HapII CCGG 3 cut(s) 117, 123, 194
HgaI GACGC 2 cut(s) 17, 268
HhaI GCGC 2 cut(s) 122, 330
Hin1I GRCGYC 2 cut(s) 120, 260
Hin1II CATG 1 cut(s) 154
Hin6I GCGC 2 cut(s) 120, 328
HinP1I GCGC 2 cut(s) 120, 328
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HinfI GANTC 3 cut(s) 62, 172, 248
HpaII CCGG 3 cut(s) 117, 123, 194
Hpy166II GTNNAC 2 cut(s) 87, 225
Hpy188I TCNGA 4 cut(s) 59, 185, 247, 258
Hpy8I GTNNAC 2 cut(s) 87, 225
Hpy99I CGWCG 2 cut(s) 11, 23
HpyAV CCTTC 1 cut(s) 286
HpyCH4III ACNGT 3 cut(s) 138, 274, 317
HpyCH4IV ACGT 3 cut(s) 26, 104, 324
HpyF10VI GCNNNNNNNGC 4 cut(s) 45, 138, 147, 187
HpyF3I CTNAG 2 cut(s) 200, 255
HpySE526I ACGT 3 cut(s) 26, 104, 324
Hsp92I GRCGYC 2 cut(s) 120, 260
Hsp92II CATG 1 cut(s) 154
HspAI GCGC 2 cut(s) 120, 328
KasI GGCGCC 1 cut(s) 119
LpnPI CCDG 9 cut(s) 53, 130, 136, 155, 207, 225, 252, 252, 279
Lsp1109I GCAGC 1 cut(s) 345
MaeII ACGT 3 cut(s) 26, 104, 324
MhlI GDGCHC 1 cut(s) 183
MluI ACGCGT 2 cut(s) 9, 51
Mly113I GGCGCC 1 cut(s) 120
MlyI GAGTC 1 cut(s) 257
MnlI CCTC 3 cut(s) 219, 225, 325
MseI TTAA 1 cut(s) 93
MslI CAYNNNNRTG 1 cut(s) 167
MspCI CTTAAG 1 cut(s) 92
MspI CCGG 3 cut(s) 117, 123, 194
MspR9I CCNGG 2 cut(s) 240, 267
Mva1269I GAATGC 1 cut(s) 155
MvaI CCWGG 2 cut(s) 240, 267
MvnI CGCG 4 cut(s) 11, 53, 278, 330
MwoI GCNNNNNNNGC 4 cut(s) 45, 138, 147, 187
NarI GGCGCC 1 cut(s) 120
NlaIII CATG 1 cut(s) 154
NlaIV GGNNCC 2 cut(s) 121, 244
PcsI WCGNNNNNNNCGW 3 cut(s) 15, 27, 321
PctI GAATGC 1 cut(s) 155
PfeI GAWTC 2 cut(s) 62, 172
PkrI GCNGC 5 cut(s) 41, 192, 237, 264, 360
PleI GAGTC 1 cut(s) 256
PluTI GGCGCC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 256
Ppu21I YACGTR 1 cut(s) 105
Psp6I CCWGG 2 cut(s) 238, 265
PspGI CCWGG 2 cut(s) 238, 265
PspN4I GGNNCC 2 cut(s) 121, 244
RsaI GTAC 5 cut(s) 35, 107, 135, 224, 271
RsaNI GTAC 5 cut(s) 34, 106, 134, 223, 270
RseI CAYNNNNRTG 1 cut(s) 167
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 5 cut(s) 40, 191, 236, 263, 359
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 2 cut(s) 240, 267
SduI GDGCHC 1 cut(s) 183
SetI ASST 5 cut(s) 29, 72, 107, 217, 327
SfoI GGCGCC 1 cut(s) 121
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
SsiI CCGC 9 cut(s) 39, 42, 191, 218, 233, 236, 263, 278, 287
SspDI GGCGCC 1 cut(s) 119
StyD4I CCNGG 2 cut(s) 238, 265
TaaI ACNGT 3 cut(s) 138, 274, 317
TaiI ACGT 3 cut(s) 29, 107, 327
TaqI TCGA 2 cut(s) 30, 159
TauI GCSGC 4 cut(s) 42, 193, 238, 265
TfiI GAWTC 2 cut(s) 62, 172
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 2 cut(s) 143, 232
TseI GCWGC 1 cut(s) 358
TspRI CASTG 2 cut(s) 143, 232
Vha464I CTTAAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.