Rw1G020190

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0017359
Physical Location & Seq
Forward (+)
43772397 .. 43773213
817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G020190.1

Sequence Viewer

Length: 651 bp
ATGGCGGCCAGACCTATGGCCAATCTGACGGCCATTATCCTCTTCCTCCTCCTCATCACCATCGCCGCCACTTCCGCTGCCCCGGCCCCGGCTCCGGTGGCTCCTCCGGCCACCAAGTACATTAACCACACCGTGGGTGGGCCCATCGGGTGGTTCTTCAACTCCACCTCCAACACTTCCTTCACTAATTACTCCTCCTGGGCTGCTTCTCAGACCTTCAACCTCGGCGACTATCTAGTTTTCAACACTGAGAACCAGACGGTGATTGAGACCCAAAACGCAACGACATACCGTAGCTGCACAGCGGACGACACGTCGGACGAGACCACTTTCGTCTGGGGGGATGATACTGCGGGGAAGAAGACCATTGTGGTGCCATTGGTTACCGAGGGTGCCAACTACTACTTCTCCGGCAGCGGCGACGGCCAGCAGTGCCAGCAAGGCATGGCCTTCGCGATCGAAGTCAATCACGGCCTTGGCTTGCCGCCGATTCTCAATCAGCCTCCACCTCCGCCGTACACGGAGCCGCCGGCGCAGTCGCCGCCTGGAACTGTCGACGGAACTCAGCCGTCGGGGAATAGTGGGTTCAGAAGCGGCGCTAGTTTGAGCGGAGGGTTATTGGTTGCGTTTGTGCTGGTTCTCAATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

216

Amino Acids

22.59

Weight (kDa)

4.36

Isoelectric Point (pI)

46.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 59 - 149 1e-14 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017359)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12470
malus_domestica MD02G1199000.v1.1
prunus_persica Prupe.2G149300_v2.0.a1
pyrus_communis pycom02g16300
rosa_chinensis RchiOBHm_Chr1g0351281
rosa_laevigata RLG00000028418
rosa_roxburghii Rroxscaffold_4G00303910
rosa_rugosa Rorug01G0217500
rosa_samantha Rh1AG231900 Rh1BG202100 Rh1CG216600 Rh1DG229400
rosa_wichuraiana Rw1G020190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 373, 392
AccB7I CCANNNNNTGG 2 cut(s) 133, 150
AccBSI CCGCTC 1 cut(s) 609
AccI GTMKAC 1 cut(s) 555
AccII CGCG 1 cut(s) 455
AcoI YGGCCR 5 cut(s) 6, 18, 30, 108, 424
AdeI CACNNNGTG 1 cut(s) 133
AfaI GTAC 2 cut(s) 119, 518
AfiI CCNNNNNNNGG 5 cut(s) 88, 94, 133, 138, 150
AflIII ACRYGT 1 cut(s) 312
AgsI TTSAA 3 cut(s) 160, 220, 244
AhdI GACNNNNNGTC 1 cut(s) 313
AjiI CACGTC 1 cut(s) 315
AjnI CCWGG 2 cut(s) 197, 544
AjuI GAANNNNNNNTTGG 4 cut(s) 164, 196, 389, 421
AluBI AGCT 1 cut(s) 297
AluI AGCT 1 cut(s) 297
Alw26I GTCTC 2 cut(s) 263, 317
AoxI GGCC 9 cut(s) 6, 18, 30, 84, 108, 140, 424, 447, 472
ApaI GGGCCC 1 cut(s) 144
ApeKI GCWGC 4 cut(s) 77, 203, 297, 414
AspLEI GCGC 2 cut(s) 535, 599
AspS9I GGNCC 3 cut(s) 85, 140, 141
AsuC2I CCSGG 2 cut(s) 83, 89
AsuHPI GGTGA 2 cut(s) 49, 274
BaeGI GKGCMC 1 cut(s) 144
BalI TGGCCA 1 cut(s) 20
BanI GGYRCC 2 cut(s) 373, 392
BanII GRGCYC 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 368
BbvI GCAGC 4 cut(s) 64, 190, 284, 426
BccI CCATC 2 cut(s) 68, 152
BceAI ACGGC 5 cut(s) 45, 439, 487, 499, 553
BcgI CGANNNNNNTGC 2 cut(s) 433, 467
BciT130I CCWGG 2 cut(s) 199, 546
BcnI CCSGG 2 cut(s) 83, 89
BcoDI GTCTC 2 cut(s) 263, 317
BfaI CTAG 2 cut(s) 236, 600
BfoI RGCGCY 1 cut(s) 600
BglI GCCNNNNNGGC 1 cut(s) 441
Bme1390I CCNGG 4 cut(s) 83, 89, 199, 546
BmeRI GACNNNNNGTC 1 cut(s) 313
BmgBI CACGTC 1 cut(s) 315
BmgT120I GGNCC 3 cut(s) 85, 140, 141
BmiI GGNNCC 7 cut(s) 87, 93, 102, 142, 375, 394, 525
BmrFI CCNGG 4 cut(s) 83, 89, 199, 546
BpiI GAAGAC 1 cut(s) 368
BpuMI CCSGG 2 cut(s) 83, 89
BsaI GGTCTC 2 cut(s) 263, 317
BsaJI CCNNGG 7 cut(s) 81, 87, 132, 198, 223, 387, 475
BsaWI WCCGGW 1 cut(s) 94
BsaXI ACNNNNNCTCC 4 cut(s) 152, 182, 392, 422
Bsc4I CCNNNNNNNGG 5 cut(s) 88, 94, 133, 138, 150
Bse118I RCCGGY 1 cut(s) 529
BseBI CCWGG 2 cut(s) 199, 546
BseDI CCNNGG 7 cut(s) 81, 87, 132, 198, 223, 387, 475
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 5 cut(s) 88, 94, 133, 138, 150
BseMII CTCAG 3 cut(s) 224, 240, 578
BseRI GAGGAG 4 cut(s) 38, 41, 93, 184
BseSI GKGCMC 1 cut(s) 144
BseXI GCAGC 4 cut(s) 64, 190, 284, 426
BsgI GTGCAG 1 cut(s) 283
Bsh1236I CGCG 1 cut(s) 455
Bsh1285I CGRYCG 1 cut(s) 459
BshFI GGCC 9 cut(s) 8, 20, 32, 86, 110, 142, 426, 449, 474
BshNI GGYRCC 2 cut(s) 373, 392
BsiEI CGRYCG 1 cut(s) 459
BsiSI CCGG 6 cut(s) 83, 89, 95, 107, 411, 530
BslI CCNNNNNNNGG 5 cut(s) 88, 94, 133, 138, 150
BsmAI GTCTC 2 cut(s) 263, 317
BsnI GGCC 9 cut(s) 8, 20, 32, 86, 110, 142, 426, 449, 474
Bso31I GGTCTC 2 cut(s) 263, 317
Bsp120I GGGCCC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 1 cut(s) 456
Bsp68I TCGCGA 1 cut(s) 455
BspANI GGCC 9 cut(s) 8, 20, 32, 86, 110, 142, 426, 449, 474
BspCNI CTCAG 3 cut(s) 223, 241, 577
BspFNI CGCG 1 cut(s) 455
BspLI GGNNCC 7 cut(s) 87, 93, 102, 142, 375, 394, 525
BspT107I GGYRCC 2 cut(s) 373, 392
BspTNI GGTCTC 2 cut(s) 263, 317
BsrBI CCGCTC 1 cut(s) 609
BsrFI RCCGGY 1 cut(s) 529
BssAI RCCGGY 1 cut(s) 529
BssECI CCNNGG 7 cut(s) 81, 87, 132, 198, 223, 387, 475
BssMI GATC 1 cut(s) 456
BssT1I CCWWGG 1 cut(s) 475
Bst2UI CCWGG 2 cut(s) 199, 546
Bst4CI ACNGT 4 cut(s) 133, 262, 293, 553
Bst6I CTCTTC 1 cut(s) 47
BstC8I GCNNGC 4 cut(s) 428, 437, 482, 531
BstDEI CTNAG 3 cut(s) 210, 249, 564
BstDSI CCRYGG 1 cut(s) 132
BstEII GGTNACC 1 cut(s) 382
BstF5I GGATG 1 cut(s) 349
BstFNI CGCG 1 cut(s) 455
BstH2I RGCGCY 1 cut(s) 600
BstHHI GCGC 2 cut(s) 535, 599
BstKTI GATC 1 cut(s) 459
BstMAI GTCTC 2 cut(s) 263, 317
BstMBI GATC 1 cut(s) 456
BstMCI CGRYCG 1 cut(s) 459
BstNI CCWGG 2 cut(s) 199, 546
BstPI GGTNACC 1 cut(s) 382
BstSCI CCNGG 4 cut(s) 81, 87, 197, 544
BstSLI GKGCMC 1 cut(s) 144
BstUI CGCG 1 cut(s) 455
BstV1I GCAGC 4 cut(s) 64, 190, 284, 426
BstV2I GAAGAC 1 cut(s) 368
BstXI CCANNNNNNTGG 1 cut(s) 16
BsuRI GGCC 9 cut(s) 8, 20, 32, 86, 110, 142, 426, 449, 474
BtgI CCRYGG 1 cut(s) 132
BtgZI GCGATG 1 cut(s) 46
BtrI CACGTC 1 cut(s) 315
BtsCI GGATG 1 cut(s) 349
BtsI GCAGTG 1 cut(s) 437
BtsIMutI CAGTG 2 cut(s) 246, 437
BtuMI TCGCGA 1 cut(s) 455
Cac8I GCNNGC 4 cut(s) 428, 437, 482, 531
CfoI GCGC 2 cut(s) 535, 599
Cfr10I RCCGGY 1 cut(s) 529
Cfr13I GGNCC 3 cut(s) 85, 140, 141
Csp6I GTAC 2 cut(s) 118, 517
CviAII CATG 1 cut(s) 445
CviQI GTAC 2 cut(s) 118, 517
DdeI CTNAG 3 cut(s) 210, 249, 564
DpnI GATC 1 cut(s) 458
DpnII GATC 1 cut(s) 456
DraIII CACNNNGTG 1 cut(s) 133
DriI GACNNNNNGTC 1 cut(s) 313
EaeI YGGCCR 5 cut(s) 6, 18, 30, 108, 424
Eam1104I CTCTTC 1 cut(s) 47
Eam1105I GACNNNNNGTC 1 cut(s) 313
EarI CTCTTC 1 cut(s) 47
EciI GGCGGA 1 cut(s) 501
Eco130I CCWWGG 1 cut(s) 475
Eco24I GRGCYC 1 cut(s) 144
Eco31I GGTCTC 2 cut(s) 263, 317
Eco91I GGTNACC 1 cut(s) 382
EcoO65I GGTNACC 1 cut(s) 382
EcoRII CCWGG 2 cut(s) 197, 544
EcoT14I CCWWGG 1 cut(s) 475
EcoT38I GRGCYC 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 475
FaeI CATG 1 cut(s) 448
FaiI YATR 3 cut(s) 17, 289, 446
FatI CATG 1 cut(s) 444
FauI CCCGC 1 cut(s) 346
FblI GTMKAC 1 cut(s) 555
FokI GGATG 1 cut(s) 356
FriOI GRGCYC 1 cut(s) 144
FspBI CTAG 2 cut(s) 236, 600
GlaI GCGC 2 cut(s) 534, 598
HaeII RGCGCY 1 cut(s) 600
HaeIII GGCC 9 cut(s) 8, 20, 32, 86, 110, 142, 426, 449, 474
HapII CCGG 6 cut(s) 83, 89, 95, 107, 411, 530
HhaI GCGC 2 cut(s) 535, 599
Hin1II CATG 1 cut(s) 448
Hin6I GCGC 2 cut(s) 533, 597
HinP1I GCGC 2 cut(s) 533, 597
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HinfI GANTC 1 cut(s) 490
HpaII CCGG 6 cut(s) 83, 89, 95, 107, 411, 530
HphI GGTGA 2 cut(s) 49, 274
Hpy166II GTNNAC 2 cut(s) 519, 556
Hpy188I TCNGA 4 cut(s) 27, 213, 319, 590
Hpy188III TCNNGA 1 cut(s) 454
Hpy8I GTNNAC 2 cut(s) 519, 556
Hpy99I CGWCG 4 cut(s) 319, 425, 560, 574
HpyAV CCTTC 3 cut(s) 190, 226, 460
HpyCH4III ACNGT 4 cut(s) 133, 262, 293, 553
HpyCH4IV ACGT 1 cut(s) 314
HpyCH4V TGCA 1 cut(s) 300
HpyF3I CTNAG 3 cut(s) 210, 249, 564
HpySE526I ACGT 1 cut(s) 314
Hsp92II CATG 1 cut(s) 448
HspAI GCGC 2 cut(s) 533, 597
KroI GCCGGC 1 cut(s) 529
KroNI GCCGGC 1 cut(s) 531
Kzo9I GATC 1 cut(s) 456
LmnI GCTCC 3 cut(s) 97, 106, 523
Lsp1109I GCAGC 4 cut(s) 64, 190, 284, 426
MaeI CTAG 2 cut(s) 236, 600
MaeII ACGT 1 cut(s) 314
MaeIII GTNAC 1 cut(s) 382
MalI GATC 1 cut(s) 458
MbiI CCGCTC 1 cut(s) 609
MboI GATC 1 cut(s) 456
MboII GAAGA 4 cut(s) 34, 148, 370, 373
MhlI GDGCHC 1 cut(s) 144
MlsI TGGCCA 1 cut(s) 20
MluCI AATT 1 cut(s) 187
MluNI TGGCCA 1 cut(s) 20
MmeI TCCRAC 2 cut(s) 195, 297
Mox20I TGGCCA 1 cut(s) 20
MreI CGCCGGCG 1 cut(s) 529
MroNI GCCGGC 1 cut(s) 529
MscI TGGCCA 1 cut(s) 20
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 371
Msp20I TGGCCA 1 cut(s) 20
MspA1I CMGCKG 3 cut(s) 77, 305, 417
MspI CCGG 6 cut(s) 83, 89, 95, 107, 411, 530
MspR9I CCNGG 4 cut(s) 83, 89, 199, 546
MvaI CCWGG 2 cut(s) 199, 546
MvnI CGCG 1 cut(s) 455
NaeI GCCGGC 1 cut(s) 531
NciI CCSGG 2 cut(s) 83, 89
NdeII GATC 1 cut(s) 456
NgoMIV GCCGGC 1 cut(s) 529
NlaIII CATG 1 cut(s) 448
NlaIV GGNNCC 7 cut(s) 87, 93, 102, 142, 375, 394, 525
NmeAIII GCCGAG 1 cut(s) 204
NruI TCGCGA 1 cut(s) 455
PdiI GCCGGC 1 cut(s) 531
PfeI GAWTC 1 cut(s) 490
PflMI CCANNNNNTGG 2 cut(s) 133, 150
Ple19I CGATCG 1 cut(s) 459
Psp6I CCWGG 2 cut(s) 197, 544
PspEI GGTNACC 1 cut(s) 382
PspGI CCWGG 2 cut(s) 197, 544
PspN4I GGNNCC 7 cut(s) 87, 93, 102, 142, 375, 394, 525
PspOMI GGGCCC 1 cut(s) 140
PspPI GGNCC 3 cut(s) 85, 140, 141
PvuI CGATCG 1 cut(s) 459
RruI TCGCGA 1 cut(s) 455
RsaI GTAC 2 cut(s) 119, 518
RsaNI GTAC 2 cut(s) 118, 517
RseI CAYNNNNRTG 1 cut(s) 371
SalI GTCGAC 1 cut(s) 554
SaqAI TTAA 1 cut(s) 123
Sau3AI GATC 1 cut(s) 456
Sau96I GGNCC 3 cut(s) 85, 140, 141
ScrFI CCNGG 4 cut(s) 83, 89, 199, 546
SduI GDGCHC 1 cut(s) 144
SetI ASST 7 cut(s) 16, 170, 218, 225, 299, 317, 511
SgrAI CRCCGGYG 1 cut(s) 529
SmiMI CAYNNNNRTG 1 cut(s) 371
Sse9I AATT 1 cut(s) 187
SspMI CTAG 2 cut(s) 236, 600
StyD4I CCNGG 4 cut(s) 81, 87, 197, 544
StyI CCWWGG 1 cut(s) 475
TaaI ACNGT 4 cut(s) 133, 262, 293, 553
TaiI ACGT 1 cut(s) 317
TaqI TCGA 2 cut(s) 459, 555
TasI AATT 1 cut(s) 187
TatI WGTACW 1 cut(s) 117
TauI GCSGC 7 cut(s) 8, 68, 420, 487, 529, 544, 597
TfiI GAWTC 1 cut(s) 490
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 2 cut(s) 253, 437
TseI GCWGC 4 cut(s) 77, 203, 297, 414
TspGWI ACGGA 2 cut(s) 536, 573
TspRI CASTG 2 cut(s) 253, 437
Van91I CCANNNNNTGG 2 cut(s) 133, 150
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 555
XspI CTAG 2 cut(s) 236, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.