Rh1CG216600

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0017359
Physical Location & Seq
Forward (+)
46604481 .. 46606096
1616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG216600.1

Sequence Viewer

Length: 645 bp
ATGGCGGCCAGACCTATGGCCAATCTGACGGCCATTATCCTCTTCCTCCTCCTCATCACCATCGCCGCCACTTCCGCTGCCCCTGCCCCGGCGGCTCCTCCCGCCACCAAGTACATTAACCACACCGTGGGTGGGCCCATCGGGTGGTTCTTCAACTCCACCTCCAACACTTCCTTCACTAATTACTCCTCCTGGGCTGCTTCTCAGACCTTCAACCTCGGCGACTATCTAGTTTTCAACACTGAGAACCAGACGGTGATTGACACCCAAAACGCGACGACATACCGTAGCTGCACAGCGGACGACACGTCGGACGAGACCACTTTCGTCTGGGGGGATGATACTGCGGGGAAGAAGACCATTGTGGTGCCATTGGTTACCGAGGGTGCCAACTACTACTTCTCCGGCAGCGGCGACGGCCAGCAGTGCCAGCAAGGCATGGCCTTCGCGATCGAAGTCAATCACGGCCTCGGCTTGCCGCCGATTCTCAATCAGCCTCCACCTCCGCCGTACACGGAGCCGCCGGCGCAGTCGACGCCTGGAACTGTCGACGGAACTCAGCCGTCGGGGAATAGTGGGTTCAGAAGCGGCGCTAGTTTGAGCGGAGGGTTATTGGTTGCGTTTGTGCTGGTTCTCAAGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

214

Amino Acids

22.4

Weight (kDa)

4.47

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 57 - 147 1.8e-14 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017359)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12470
malus_domestica MD02G1199000.v1.1
prunus_persica Prupe.2G149300_v2.0.a1
pyrus_communis pycom02g16300
rosa_chinensis RchiOBHm_Chr1g0351281
rosa_laevigata RLG00000028418
rosa_roxburghii Rroxscaffold_4G00303910
rosa_rugosa Rorug01G0217500
rosa_samantha Rh1AG231900 Rh1BG202100 Rh1CG216600 Rh1DG229400
rosa_wichuraiana Rw1G020190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 367, 386
AccB7I CCANNNNNTGG 2 cut(s) 127, 144
AccBSI CCGCTC 1 cut(s) 603
AccI GTMKAC 2 cut(s) 533, 549
AccII CGCG 2 cut(s) 275, 449
AcoI YGGCCR 4 cut(s) 6, 18, 30, 418
AcyI GRCGYC 1 cut(s) 536
AdeI CACNNNGTG 1 cut(s) 127
AfaI GTAC 2 cut(s) 113, 512
AfiI CCNNNNNNNGG 4 cut(s) 88, 127, 132, 144
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 3 cut(s) 154, 214, 238
AhdI GACNNNNNGTC 1 cut(s) 307
AjiI CACGTC 1 cut(s) 309
AjnI CCWGG 2 cut(s) 191, 538
AjuI GAANNNNNNNTTGG 4 cut(s) 158, 190, 383, 415
AluBI AGCT 1 cut(s) 291
AluI AGCT 1 cut(s) 291
Alw26I GTCTC 1 cut(s) 311
AoxI GGCC 7 cut(s) 6, 18, 30, 134, 418, 441, 466
ApaI GGGCCC 1 cut(s) 138
ApeKI GCWGC 4 cut(s) 77, 197, 291, 408
AspLEI GCGC 2 cut(s) 529, 593
AspS9I GGNCC 2 cut(s) 134, 135
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 2 cut(s) 49, 268
BaeGI GKGCMC 1 cut(s) 138
BalI TGGCCA 1 cut(s) 20
BanI GGYRCC 2 cut(s) 367, 386
BanII GRGCYC 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 362
BbvI GCAGC 4 cut(s) 64, 184, 278, 420
BccI CCATC 2 cut(s) 68, 146
BceAI ACGGC 5 cut(s) 45, 433, 481, 493, 547
BcgI CGANNNNNNTGC 2 cut(s) 427, 461
BciT130I CCWGG 2 cut(s) 193, 540
BcnI CCSGG 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 311
BfaI CTAG 2 cut(s) 230, 594
BfoI RGCGCY 1 cut(s) 594
BglI GCCNNNNNGGC 2 cut(s) 92, 435
Bme1390I CCNGG 3 cut(s) 89, 193, 540
BmeRI GACNNNNNGTC 1 cut(s) 307
BmgBI CACGTC 1 cut(s) 309
BmgT120I GGNCC 2 cut(s) 134, 135
BmiI GGNNCC 5 cut(s) 96, 136, 369, 388, 519
BmrFI CCNGG 3 cut(s) 89, 193, 540
BpiI GAAGAC 1 cut(s) 362
BpuEI CTTGAG 1 cut(s) 620
BpuMI CCSGG 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 536
BsaI GGTCTC 1 cut(s) 311
BsaJI CCNNGG 6 cut(s) 87, 126, 192, 217, 381, 469
BsaXI ACNNNNNCTCC 4 cut(s) 146, 176, 386, 416
Bsc4I CCNNNNNNNGG 4 cut(s) 88, 127, 132, 144
Bse118I RCCGGY 1 cut(s) 523
BseBI CCWGG 2 cut(s) 193, 540
BseDI CCNNGG 6 cut(s) 87, 126, 192, 217, 381, 469
BseGI GGATG 1 cut(s) 343
BseLI CCNNNNNNNGG 4 cut(s) 88, 127, 132, 144
BseMII CTCAG 3 cut(s) 218, 234, 572
BseRI GAGGAG 4 cut(s) 38, 41, 87, 178
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 4 cut(s) 64, 184, 278, 420
BsgI GTGCAG 1 cut(s) 277
Bsh1236I CGCG 2 cut(s) 275, 449
Bsh1285I CGRYCG 1 cut(s) 453
BshFI GGCC 7 cut(s) 8, 20, 32, 136, 420, 443, 468
BshNI GGYRCC 2 cut(s) 367, 386
BsiEI CGRYCG 1 cut(s) 453
BsiSI CCGG 3 cut(s) 89, 405, 524
BslI CCNNNNNNNGG 4 cut(s) 88, 127, 132, 144
BsmAI GTCTC 1 cut(s) 311
BsnI GGCC 7 cut(s) 8, 20, 32, 136, 420, 443, 468
Bso31I GGTCTC 1 cut(s) 311
Bsp120I GGGCCC 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 1 cut(s) 450
Bsp68I TCGCGA 1 cut(s) 449
BspANI GGCC 7 cut(s) 8, 20, 32, 136, 420, 443, 468
BspCNI CTCAG 3 cut(s) 217, 235, 571
BspFNI CGCG 2 cut(s) 275, 449
BspLI GGNNCC 5 cut(s) 96, 136, 369, 388, 519
BspT107I GGYRCC 2 cut(s) 367, 386
BspTNI GGTCTC 1 cut(s) 311
BsrBI CCGCTC 1 cut(s) 603
BsrFI RCCGGY 1 cut(s) 523
BssAI RCCGGY 1 cut(s) 523
BssECI CCNNGG 6 cut(s) 87, 126, 192, 217, 381, 469
BssMI GATC 1 cut(s) 450
BssNI GRCGYC 1 cut(s) 536
Bst2UI CCWGG 2 cut(s) 193, 540
Bst4CI ACNGT 4 cut(s) 127, 256, 287, 547
Bst6I CTCTTC 1 cut(s) 47
BstACI GRCGYC 1 cut(s) 536
BstC8I GCNNGC 4 cut(s) 422, 431, 476, 525
BstDEI CTNAG 3 cut(s) 204, 243, 558
BstDSI CCRYGG 1 cut(s) 126
BstEII GGTNACC 1 cut(s) 376
BstF5I GGATG 1 cut(s) 343
BstFNI CGCG 2 cut(s) 275, 449
BstH2I RGCGCY 1 cut(s) 594
BstHHI GCGC 2 cut(s) 529, 593
BstKTI GATC 1 cut(s) 453
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 1 cut(s) 450
BstMCI CGRYCG 1 cut(s) 453
BstNI CCWGG 2 cut(s) 193, 540
BstPI GGTNACC 1 cut(s) 376
BstSCI CCNGG 3 cut(s) 87, 191, 538
BstSLI GKGCMC 1 cut(s) 138
BstUI CGCG 2 cut(s) 275, 449
BstV1I GCAGC 4 cut(s) 64, 184, 278, 420
BstV2I GAAGAC 1 cut(s) 362
BstXI CCANNNNNNTGG 1 cut(s) 16
BsuRI GGCC 7 cut(s) 8, 20, 32, 136, 420, 443, 468
BtgI CCRYGG 1 cut(s) 126
BtgZI GCGATG 1 cut(s) 46
BtrI CACGTC 1 cut(s) 309
BtsCI GGATG 1 cut(s) 343
BtsI GCAGTG 1 cut(s) 431
BtsIMutI CAGTG 2 cut(s) 240, 431
BtuMI TCGCGA 1 cut(s) 449
Cac8I GCNNGC 4 cut(s) 422, 431, 476, 525
CfoI GCGC 2 cut(s) 529, 593
Cfr10I RCCGGY 1 cut(s) 523
Cfr13I GGNCC 2 cut(s) 134, 135
CseI GACGC 1 cut(s) 544
Csp6I GTAC 2 cut(s) 112, 511
CviAII CATG 1 cut(s) 439
CviQI GTAC 2 cut(s) 112, 511
DdeI CTNAG 3 cut(s) 204, 243, 558
DpnI GATC 1 cut(s) 452
DpnII GATC 1 cut(s) 450
DraIII CACNNNGTG 1 cut(s) 127
DriI GACNNNNNGTC 1 cut(s) 307
EaeI YGGCCR 4 cut(s) 6, 18, 30, 418
Eam1104I CTCTTC 1 cut(s) 47
Eam1105I GACNNNNNGTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 47
EciI GGCGGA 1 cut(s) 495
Eco24I GRGCYC 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 311
Eco91I GGTNACC 1 cut(s) 376
EcoO65I GGTNACC 1 cut(s) 376
EcoRII CCWGG 2 cut(s) 191, 538
EcoT38I GRGCYC 1 cut(s) 138
FaeI CATG 1 cut(s) 442
FaiI YATR 3 cut(s) 17, 283, 440
FatI CATG 1 cut(s) 438
FauI CCCGC 2 cut(s) 109, 340
FblI GTMKAC 2 cut(s) 533, 549
FokI GGATG 1 cut(s) 350
FriOI GRGCYC 1 cut(s) 138
FspBI CTAG 2 cut(s) 230, 594
GlaI GCGC 2 cut(s) 528, 592
HaeII RGCGCY 1 cut(s) 594
HaeIII GGCC 7 cut(s) 8, 20, 32, 136, 420, 443, 468
HapII CCGG 3 cut(s) 89, 405, 524
HgaI GACGC 1 cut(s) 544
HhaI GCGC 2 cut(s) 529, 593
Hin1I GRCGYC 1 cut(s) 536
Hin1II CATG 1 cut(s) 442
Hin6I GCGC 2 cut(s) 527, 591
HinP1I GCGC 2 cut(s) 527, 591
HincII GTYRAC 2 cut(s) 534, 550
HindII GTYRAC 2 cut(s) 534, 550
HinfI GANTC 1 cut(s) 484
HpaII CCGG 3 cut(s) 89, 405, 524
HphI GGTGA 2 cut(s) 49, 268
Hpy166II GTNNAC 3 cut(s) 513, 534, 550
Hpy188I TCNGA 4 cut(s) 27, 207, 313, 584
Hpy188III TCNNGA 1 cut(s) 448
Hpy8I GTNNAC 3 cut(s) 513, 534, 550
Hpy99I CGWCG 6 cut(s) 280, 313, 419, 538, 554, 568
HpyAV CCTTC 3 cut(s) 184, 220, 454
HpyCH4III ACNGT 4 cut(s) 127, 256, 287, 547
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 1 cut(s) 294
HpyF3I CTNAG 3 cut(s) 204, 243, 558
HpySE526I ACGT 1 cut(s) 308
Hsp92I GRCGYC 1 cut(s) 536
Hsp92II CATG 1 cut(s) 442
HspAI GCGC 2 cut(s) 527, 591
KroI GCCGGC 1 cut(s) 523
KroNI GCCGGC 1 cut(s) 525
Kzo9I GATC 1 cut(s) 450
LmnI GCTCC 2 cut(s) 100, 517
Lsp1109I GCAGC 4 cut(s) 64, 184, 278, 420
MaeI CTAG 2 cut(s) 230, 594
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 1 cut(s) 376
MalI GATC 1 cut(s) 452
MbiI CCGCTC 1 cut(s) 603
MboI GATC 1 cut(s) 450
MboII GAAGA 4 cut(s) 34, 142, 364, 367
MhlI GDGCHC 1 cut(s) 138
MlsI TGGCCA 1 cut(s) 20
MluCI AATT 1 cut(s) 181
MluNI TGGCCA 1 cut(s) 20
MmeI TCCRAC 2 cut(s) 189, 291
Mox20I TGGCCA 1 cut(s) 20
MreI CGCCGGCG 1 cut(s) 523
MroNI GCCGGC 1 cut(s) 523
MscI TGGCCA 1 cut(s) 20
MseI TTAA 1 cut(s) 117
MslI CAYNNNNRTG 1 cut(s) 365
Msp20I TGGCCA 1 cut(s) 20
MspA1I CMGCKG 3 cut(s) 77, 299, 411
MspI CCGG 3 cut(s) 89, 405, 524
MspR9I CCNGG 3 cut(s) 89, 193, 540
MvaI CCWGG 2 cut(s) 193, 540
MvnI CGCG 2 cut(s) 275, 449
NaeI GCCGGC 1 cut(s) 525
NciI CCSGG 1 cut(s) 89
NdeII GATC 1 cut(s) 450
NgoMIV GCCGGC 1 cut(s) 523
NlaIII CATG 1 cut(s) 442
NlaIV GGNNCC 5 cut(s) 96, 136, 369, 388, 519
NmeAIII GCCGAG 2 cut(s) 198, 450
NruI TCGCGA 1 cut(s) 449
PdiI GCCGGC 1 cut(s) 525
PfeI GAWTC 1 cut(s) 484
PflMI CCANNNNNTGG 2 cut(s) 127, 144
Ple19I CGATCG 1 cut(s) 453
Psp6I CCWGG 2 cut(s) 191, 538
PspEI GGTNACC 1 cut(s) 376
PspGI CCWGG 2 cut(s) 191, 538
PspN4I GGNNCC 5 cut(s) 96, 136, 369, 388, 519
PspOMI GGGCCC 1 cut(s) 134
PspPI GGNCC 2 cut(s) 134, 135
PvuI CGATCG 1 cut(s) 453
RruI TCGCGA 1 cut(s) 449
RsaI GTAC 2 cut(s) 113, 512
RsaNI GTAC 2 cut(s) 112, 511
RseI CAYNNNNRTG 1 cut(s) 365
SalI GTCGAC 2 cut(s) 532, 548
SaqAI TTAA 1 cut(s) 117
Sau3AI GATC 1 cut(s) 450
Sau96I GGNCC 2 cut(s) 134, 135
ScrFI CCNGG 3 cut(s) 89, 193, 540
SduI GDGCHC 1 cut(s) 138
SetI ASST 8 cut(s) 16, 164, 212, 219, 293, 311, 505, 642
SgrAI CRCCGGYG 1 cut(s) 523
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 635
SmoI CTYRAG 1 cut(s) 635
Sse9I AATT 1 cut(s) 181
SspMI CTAG 2 cut(s) 230, 594
StyD4I CCNGG 3 cut(s) 87, 191, 538
TaaI ACNGT 4 cut(s) 127, 256, 287, 547
TaiI ACGT 1 cut(s) 311
TaqI TCGA 3 cut(s) 453, 533, 549
TasI AATT 1 cut(s) 181
TatI WGTACW 1 cut(s) 111
TauI GCSGC 7 cut(s) 8, 68, 95, 414, 481, 523, 591
TfiI GAWTC 1 cut(s) 484
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 2 cut(s) 247, 431
TseI GCWGC 4 cut(s) 77, 197, 291, 408
TspGWI ACGGA 2 cut(s) 530, 567
TspRI CASTG 2 cut(s) 247, 431
Van91I CCANNNNNTGG 2 cut(s) 127, 144
XcmI CCANNNNNNNNNTGG 1 cut(s) 128
XmiI GTMKAC 2 cut(s) 533, 549
XspI CTAG 2 cut(s) 230, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.