FvH4_7g12480

Synaptotagmin-like mitochondrial-lipid-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012269
Physical Location & Seq
Forward (+)
11311931 .. 11318678
6748 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12480.t2

Sequence Viewer

Length: 1554 bp
ATGGGGTTGATTTCGGGGATTCTGATGGGGATGGTGTTCGGAATTGCGTTGATGGCCGGCTGGCGTCACATGATGGCCTACCGGAGTACCAAGCGTATCGCTAAGGCAGTTGATATAAAACTCCTTGGGTCGCTAAACAGAGACGATTTGAAGAAAATATGTGGGGACAACTTTCCTGAGTGGATTTCTTTCCCTGTATTTGAACAGGTTAAATGGTTGAATAAGCAGCTGAGCAAACTGTGGCCATTCGTTGCAGATGCAGCAGAGCTGGTGATTAGAGAGTCTGTTGAACCACTATTGGAAGAATACAGACCTCCGGGAATCACATCATTGAAATTTAGCAAACTGTCTCTTGGTACTGTAGCACCCAAGATTGAAGGTATTCGTGTTCAGAGTCTTAAGAAAGGTCAAATCACAATGGACATTGATTTTCGTTGGGGTGGTGATCCAAATATCGTATTAGGTGTTGAAGCTGCACTTGTTGCTTCAATTCCCATACAGTTGAAGGATCTTCAAGTATTTACTGTTGTTCGCGTAATCTTCCAACTTTCCGAAGAGATCCCTTGTATTTCTGCTGTTGTCGTTGCTCTACTTGCAGAGCCAAAGCCTAGAATTGATTATACTGTGAAGGCTGTTGGTGGAAGCTTAACAGCCCTCCCTGGAATATCGGATATGATTGATGATACAGTCGAGACGATTGTCACAGACATGCTCCAGTGGCCGCATAGGATTGTTGTTCCAATTGGGGTGGATGTTGATATAAGTGACTTGGAGCTTAAACCTCAGGGAAAAATCACCTTGACAGTCGTTAGAGCCAATGATTTGAAGAACATGGAAATGATTGGAAAATCAGACCCTTATGTTGTTGTGTACATTCGTCCGTTGTTCAAGGTTAAGACCAAGGTTATCGACAACAATCTGAACCCTATTTGGGACCAAACATTTGAGTTGATTGCAGAAGACAAGGAGACACAATCAATTGTTTTTGAGGTTTTTGATGAGGACATTGGGCAAGACAAGCGATTAGGAGTTACAAGGTTACCTTTGATTGATCTGGAAGCAGAAGTTCCTAAAGAGATGGAACTGAGATTGCAGCCATCACTTAACATGCTAAAAATAAAAGAAAAGAAGGACAGAGGAACACTTACGATTAAGATCTTATACCATGAGTTCAACAAGGAAGAGCAGTTAGTTGCTTTAGAGGAAGAGAAAAGGATTTTAGAAGAAAGAAAGAAACTGAAAGCCGAAGGAGTTATAGGGAGCACAATGGATGCACTTGGGTCTGGTGTTGGTGTGGTGGGTTCTGGTATCGGTGCTGGAGTTGGGTTTGTGGGAACTGGTGTTGGTGCTGGAGTTGGGCTGGTAGGAAGTGGTGTCAGTTCTGGGGCTGGAATGGTTGGTAGTGGCCTTGGAGCTGTTGGTAGTAGCCTGAGCAAAGCAGGGAAGTTCATGGGGAGGACTATCACTGGGCAATCCAGCCATTCAAGGAAAAAAAGTGGTTCTACAACTCCGGTGAATAGTGTCCAAGAAAATGGTGGTGCAAAGCCACGGTAA

Protein Analysis

518

Amino Acids

56.2

Weight (kDa)

6.95

Isoelectric Point (pI)

26.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMP_LBD PF17047 68 - 248 5.1e-17 Synaptotagmin-like mitochondrial-lipid-binding domain
C2 PF00168 263 - 358 8.5e-23 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012269)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61050 AT3G61050
fragaria_vesca FvH4_7g12480 FvH4_7g12480
malus_domestica MD02G1198800.v1.1
prunus_persica Prupe.2G149400_v2.0.a1 Prupe.2G149400_v2.0.a1
pyrus_communis pycom02g16290
rosa_chinensis RchiOBHm_Chr1g0351321
rosa_laevigata RLG00000028415
rosa_multiflora Rmu_sc0004933.1_g000008 Rmu_sc0013758.1_g000001
rosa_roxburghii Rroxscaffold_4G00303880
rosa_rugosa Rorug01G0217600
rosa_samantha Rh1AG232000 Rh1BG202400 Rh1CG216800 Rh1DG229600
rosa_wichuraiana Rw1G020210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 534
AciI CCGC 1 cut(s) 722
AclWI GGATC 3 cut(s) 440, 516, 553
AcoI YGGCCR 3 cut(s) 54, 242, 719
AcsI RAATTY 1 cut(s) 335
AcyI GRCGYC 1 cut(s) 64
AfaI GTAC 3 cut(s) 88, 358, 872
AfiI CCNNNNNNNGG 1 cut(s) 931
AflII CTTAAG 1 cut(s) 398
AjnI CCWGG 1 cut(s) 658
AluBI AGCT 6 cut(s) 229, 268, 473, 645, 775, 1415
AluI AGCT 6 cut(s) 229, 268, 473, 645, 775, 1415
Alw21I GWGCWC 1 cut(s) 1265
Alw26I GTCTC 4 cut(s) 135, 354, 686, 962
AlwI GGATC 3 cut(s) 440, 516, 553
AoxI GGCC 5 cut(s) 54, 75, 242, 719, 1405
ApeKI GCWGC 4 cut(s) 226, 260, 473, 1093
ApoI RAATTY 1 cut(s) 335
ArsI GACNNNNNNTTYG 2 cut(s) 926, 958
Asp700I GAANNNNTTC 1 cut(s) 381
AspS9I GGNCC 1 cut(s) 934
AsuC2I CCSGG 1 cut(s) 318
AsuHPI GGTGA 4 cut(s) 283, 455, 787, 1525
AvaII GGWCC 1 cut(s) 934
AxyI CCTNAGG 1 cut(s) 783
BaeI ACNNNNGTAYC 2 cut(s) 70, 103
BalI TGGCCA 1 cut(s) 244
BbsI GAAGAC 1 cut(s) 966
Bbv12I GWGCWC 1 cut(s) 1265
BbvI GCAGC 4 cut(s) 238, 272, 460, 1105
BccI CCATC 6 cut(s) 19, 25, 46, 67, 1072, 1105
BciT130I CCWGG 1 cut(s) 660
BcnI CCSGG 1 cut(s) 318
BcoDI GTCTC 4 cut(s) 135, 354, 686, 962
BfaI CTAG 1 cut(s) 609
BfmI CTRYAG 1 cut(s) 360
BfrI CTTAAG 1 cut(s) 398
BglII AGATCT 1 cut(s) 1155
BisI GCNGC 5 cut(s) 227, 261, 474, 722, 1094
BlpI GCTNAGC 1 cut(s) 230
BlsI GCNGC 5 cut(s) 228, 262, 475, 723, 1095
Bme1390I CCNGG 2 cut(s) 318, 660
Bme18I GGWCC 1 cut(s) 934
BmgT120I GGNCC 1 cut(s) 934
BmiI GGNNCC 1 cut(s) 935
BmrFI CCNGG 2 cut(s) 318, 660
BmrI ACTGGG 1 cut(s) 1476
BmsI GCATC 2 cut(s) 247, 1261
BmuI ACTGGG 1 cut(s) 1476
BoxI GACNNNNGTC 1 cut(s) 698
BpiI GAAGAC 1 cut(s) 966
BpmI CTGGAG 3 cut(s) 698, 1338, 1371
Bpu10I CCTNAGC 2 cut(s) 102, 1430
Bpu1102I GCTNAGC 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 318
BsaBI GATNNNNATC 1 cut(s) 1154
BsaHI GRCGYC 1 cut(s) 64
BsaJI CCNNGG 5 cut(s) 124, 658, 900, 1408, 1547
BsaWI WCCGGW 2 cut(s) 81, 1510
Bsc4I CCNNNNNNNGG 1 cut(s) 931
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 3 cut(s) 715, 1342, 1471
Bse21I CCTNAGG 1 cut(s) 783
Bse8I GATNNNNATC 1 cut(s) 1154
BseBI CCWGG 1 cut(s) 660
BseDI CCNNGG 5 cut(s) 124, 658, 900, 1408, 1547
BseGI GGATG 3 cut(s) 36, 757, 1276
BseJI GATNNNNATC 1 cut(s) 1154
BseLI CCNNNNNNNGG 1 cut(s) 931
BseMII CTCAG 5 cut(s) 168, 221, 797, 1076, 1421
BseNI ACTGG 3 cut(s) 715, 1342, 1471
BseXI GCAGC 4 cut(s) 238, 272, 460, 1105
BsgI GTGCAG 1 cut(s) 459
Bsh1236I CGCG 1 cut(s) 534
BshFI GGCC 5 cut(s) 56, 77, 244, 721, 1407
BsiHKAI GWGCWC 1 cut(s) 1265
BsiSI CCGG 4 cut(s) 57, 82, 317, 1511
BslFI GGGAC 2 cut(s) 179, 947
BslI CCNNNNNNNGG 1 cut(s) 931
BsmAI GTCTC 4 cut(s) 135, 354, 686, 962
BsmBI CGTCTC 2 cut(s) 135, 686
BsmFI GGGAC 2 cut(s) 179, 947
BsnI GGCC 5 cut(s) 56, 77, 244, 721, 1407
Bsp1286I GDGCHC 1 cut(s) 1265
Bsp1407I TGTACA 1 cut(s) 870
Bsp143I GATC 5 cut(s) 445, 508, 558, 1051, 1155
Bsp1720I GCTNAGC 1 cut(s) 230
BspACI CCGC 1 cut(s) 722
BspANI GGCC 5 cut(s) 56, 77, 244, 721, 1407
BspCNI CTCAG 5 cut(s) 169, 222, 796, 1077, 1422
BspFNI CGCG 1 cut(s) 534
BspLI GGNNCC 1 cut(s) 935
BspPI GGATC 3 cut(s) 440, 516, 553
BspQI GCTCTTC 1 cut(s) 1176
BspTI CTTAAG 1 cut(s) 398
BsrFI RCCGGY 1 cut(s) 56
BsrGI TGTACA 1 cut(s) 870
BsrI ACTGG 3 cut(s) 715, 1342, 1471
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 5 cut(s) 124, 658, 900, 1408, 1547
BssMI GATC 5 cut(s) 445, 508, 558, 1051, 1155
BssNI GRCGYC 1 cut(s) 64
BssT1I CCWWGG 3 cut(s) 124, 900, 1408
Bst2UI CCWGG 1 cut(s) 660
Bst4CI ACNGT 9 cut(s) 240, 348, 361, 501, 526, 625, 688, 805, 1551
Bst6I CTCTTC 3 cut(s) 549, 1176, 1200
BstACI GRCGYC 1 cut(s) 64
BstAFI CTTAAG 1 cut(s) 398
BstAPI GCANNNNNTGC 1 cut(s) 482
BstAUI TGTACA 1 cut(s) 870
BstC8I GCNNGC 2 cut(s) 58, 62
BstDEI CTNAG 6 cut(s) 102, 177, 230, 783, 1085, 1430
BstDSI CCRYGG 1 cut(s) 1547
BstEII GGTNACC 1 cut(s) 1038
BstF5I GGATG 3 cut(s) 36, 757, 1276
BstFNI CGCG 1 cut(s) 534
BstKTI GATC 5 cut(s) 448, 511, 561, 1054, 1158
BstMAI GTCTC 4 cut(s) 135, 354, 686, 962
BstMBI GATC 5 cut(s) 445, 508, 558, 1051, 1155
BstMWI GCNNNNNNNGC 6 cut(s) 53, 260, 482, 593, 718, 1018
BstNI CCWGG 1 cut(s) 660
BstNSI RCATGY 2 cut(s) 712, 1111
BstPAI GACNNNNGTC 1 cut(s) 698
BstPI GGTNACC 1 cut(s) 1038
BstSCI CCNGG 2 cut(s) 316, 658
BstSFI CTRYAG 1 cut(s) 360
BstUI CGCG 1 cut(s) 534
BstV1I GCAGC 4 cut(s) 238, 272, 460, 1105
BstV2I GAAGAC 1 cut(s) 966
BstX2I RGATCY 3 cut(s) 508, 558, 1155
BstXI CCANNNNNNTGG 1 cut(s) 1532
BstYI RGATCY 3 cut(s) 508, 558, 1155
Bsu36I CCTNAGG 1 cut(s) 783
BsuRI GGCC 5 cut(s) 56, 77, 244, 721, 1407
BtgI CCRYGG 1 cut(s) 1547
BtsCI GGATG 3 cut(s) 36, 757, 1276
BtsIMutI CAGTG 2 cut(s) 722, 1464
Cac8I GCNNGC 2 cut(s) 58, 62
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 934
CseI GACGC 1 cut(s) 53
Csp6I GTAC 3 cut(s) 87, 357, 871
CspCI CAANNNNNGTGG 2 cut(s) 729, 764
CviAII CATG 6 cut(s) 70, 709, 832, 1108, 1166, 1450
CviQI GTAC 3 cut(s) 87, 357, 871
DdeI CTNAG 6 cut(s) 102, 177, 230, 783, 1085, 1430
DpnI GATC 5 cut(s) 447, 510, 560, 1053, 1157
DpnII GATC 5 cut(s) 445, 508, 558, 1051, 1155
EaeI YGGCCR 3 cut(s) 54, 242, 719
Eam1104I CTCTTC 3 cut(s) 549, 1176, 1200
EarI CTCTTC 3 cut(s) 549, 1176, 1200
Eco130I CCWWGG 3 cut(s) 124, 900, 1408
Eco47I GGWCC 1 cut(s) 934
Eco81I CCTNAGG 1 cut(s) 783
Eco91I GGTNACC 1 cut(s) 1038
EcoO65I GGTNACC 1 cut(s) 1038
EcoRII CCWGG 1 cut(s) 658
EcoT14I CCWWGG 3 cut(s) 124, 900, 1408
ErhI CCWWGG 3 cut(s) 124, 900, 1408
Esp3I CGTCTC 2 cut(s) 135, 686
FaeI CATG 6 cut(s) 73, 712, 835, 1111, 1169, 1453
FalI AAGNNNNNCTT 4 cut(s) 462, 494, 1027, 1059
FaqI GGGAC 2 cut(s) 179, 947
FatI CATG 6 cut(s) 69, 708, 831, 1107, 1165, 1449
Fnu4HI GCNGC 5 cut(s) 227, 261, 474, 722, 1094
FokI GGATG 3 cut(s) 43, 764, 1283
Fsp4HI GCNGC 5 cut(s) 227, 261, 474, 722, 1094
FspBI CTAG 1 cut(s) 609
GluI GCNGC 5 cut(s) 227, 261, 474, 722, 1094
GsuI CTGGAG 3 cut(s) 698, 1338, 1371
HaeIII GGCC 5 cut(s) 56, 77, 244, 721, 1407
HapII CCGG 4 cut(s) 57, 82, 317, 1511
HgaI GACGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 64
Hin1II CATG 6 cut(s) 73, 712, 835, 1111, 1169, 1453
HindIII AAGCTT 1 cut(s) 643
HinfI GANTC 4 cut(s) 19, 281, 321, 394
HpaII CCGG 4 cut(s) 57, 82, 317, 1511
HphI GGTGA 4 cut(s) 283, 455, 787, 1525
Hpy166II GTNNAC 1 cut(s) 871
Hpy188I TCNGA 7 cut(s) 24, 41, 393, 553, 670, 853, 921
Hpy188III TCNNGA 3 cut(s) 176, 691, 1055
Hpy8I GTNNAC 1 cut(s) 871
HpyAV CCTTC 5 cut(s) 371, 499, 622, 1123, 1241
HpyCH4III ACNGT 9 cut(s) 240, 348, 361, 501, 526, 625, 688, 805, 1551
HpyCH4V TGCA 8 cut(s) 254, 260, 476, 596, 956, 1093, 1274, 1541
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 260, 482, 593, 718, 1018
HpyF3I CTNAG 6 cut(s) 102, 177, 230, 783, 1085, 1430
Hsp92I GRCGYC 1 cut(s) 64
Hsp92II CATG 6 cut(s) 73, 712, 835, 1111, 1169, 1453
KroI GCCGGC 1 cut(s) 56
KroNI GCCGGC 1 cut(s) 58
Kzo9I GATC 5 cut(s) 445, 508, 558, 1051, 1155
LguI GCTCTTC 1 cut(s) 1176
LmnI GCTCC 4 cut(s) 717, 772, 1260, 1412
Lsp1109I GCAGC 4 cut(s) 238, 272, 460, 1105
LweI GCATC 2 cut(s) 247, 1261
MaeI CTAG 1 cut(s) 609
MaeIII GTNAC 5 cut(s) 65, 700, 764, 1030, 1038
MalI GATC 5 cut(s) 447, 510, 560, 1053, 1157
MboI GATC 5 cut(s) 445, 508, 558, 1051, 1155
MfeI CAATTG 2 cut(s) 741, 978
MflI RGATCY 3 cut(s) 508, 558, 1155
MhlI GDGCHC 1 cut(s) 1265
MlsI TGGCCA 1 cut(s) 244
MluCI AATT 6 cut(s) 42, 335, 489, 612, 741, 978
MluNI TGGCCA 1 cut(s) 244
MlyI GAGTC 2 cut(s) 290, 403
MmeI TCCRAC 1 cut(s) 568
MnlI CCTC 8 cut(s) 324, 665, 792, 982, 994, 1130, 1195, 1449
Mox20I TGGCCA 1 cut(s) 244
MroNI GCCGGC 1 cut(s) 56
MroXI GAANNNNTTC 1 cut(s) 381
MscI TGGCCA 1 cut(s) 244
MseI TTAA 7 cut(s) 210, 399, 647, 777, 894, 1104, 1152
MslI CAYNNNNRTG 2 cut(s) 707, 836
Msp20I TGGCCA 1 cut(s) 244
MspA1I CMGCKG 1 cut(s) 229
MspCI CTTAAG 1 cut(s) 398
MspI CCGG 4 cut(s) 57, 82, 317, 1511
MspR9I CCNGG 2 cut(s) 318, 660
MunI CAATTG 2 cut(s) 741, 978
MvaI CCWGG 1 cut(s) 660
MvnI CGCG 1 cut(s) 534
MwoI GCNNNNNNNGC 6 cut(s) 53, 260, 482, 593, 718, 1018
NaeI GCCGGC 1 cut(s) 58
NciI CCSGG 1 cut(s) 318
NdeII GATC 5 cut(s) 445, 508, 558, 1051, 1155
NgoMIV GCCGGC 1 cut(s) 56
NlaIII CATG 6 cut(s) 73, 712, 835, 1111, 1169, 1453
NlaIV GGNNCC 1 cut(s) 935
NmuCI GTSAC 3 cut(s) 65, 700, 764
NspI RCATGY 2 cut(s) 712, 1111
PciSI GCTCTTC 1 cut(s) 1176
PdiI GCCGGC 1 cut(s) 58
PdmI GAANNNNTTC 1 cut(s) 381
PfeI GAWTC 2 cut(s) 19, 321
PfoI TCCNGGA 1 cut(s) 316
PkrI GCNGC 5 cut(s) 228, 262, 475, 723, 1095
PleI GAGTC 2 cut(s) 289, 402
PpsI GAGTC 2 cut(s) 289, 402
PshAI GACNNNNGTC 1 cut(s) 698
Psp6I CCWGG 1 cut(s) 658
PspEI GGTNACC 1 cut(s) 1038
PspGI CCWGG 1 cut(s) 658
PspN4I GGNNCC 1 cut(s) 935
PspPI GGNCC 1 cut(s) 934
PsuI RGATCY 3 cut(s) 508, 558, 1155
PvuII CAGCTG 1 cut(s) 229
RsaI GTAC 3 cut(s) 88, 358, 872
RsaNI GTAC 3 cut(s) 87, 357, 871
RseI CAYNNNNRTG 2 cut(s) 707, 836
SapI GCTCTTC 1 cut(s) 1176
SaqAI TTAA 7 cut(s) 210, 399, 647, 777, 894, 1104, 1152
SatI GCNGC 5 cut(s) 227, 261, 474, 722, 1094
Sau3AI GATC 5 cut(s) 445, 508, 558, 1051, 1155
Sau96I GGNCC 1 cut(s) 934
SchI GAGTC 2 cut(s) 290, 403
ScrFI CCNGG 2 cut(s) 318, 660
SduI GDGCHC 1 cut(s) 1265
SfaNI GCATC 2 cut(s) 247, 1261
SfcI CTRYAG 1 cut(s) 360
SinI GGWCC 1 cut(s) 934
SmiMI CAYNNNNRTG 2 cut(s) 707, 836
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 6 cut(s) 42, 335, 489, 612, 741, 978
SsiI CCGC 1 cut(s) 722
SspMI CTAG 1 cut(s) 609
StyD4I CCNGG 2 cut(s) 316, 658
StyI CCWWGG 3 cut(s) 124, 900, 1408
TaaI ACNGT 9 cut(s) 240, 348, 361, 501, 526, 625, 688, 805, 1551
TaqI TCGA 2 cut(s) 690, 909
TasI AATT 6 cut(s) 42, 335, 489, 612, 741, 978
TatI WGTACW 1 cut(s) 870
TauI GCSGC 1 cut(s) 724
TfiI GAWTC 2 cut(s) 19, 321
Tru1I TTAA 7 cut(s) 210, 399, 647, 777, 894, 1104, 1152
Tru9I TTAA 7 cut(s) 210, 399, 647, 777, 894, 1104, 1152
TscAI CASTG 2 cut(s) 722, 1471
TseFI GTSAC 3 cut(s) 65, 700, 764
TseI GCWGC 4 cut(s) 226, 260, 473, 1093
Tsp45I GTSAC 3 cut(s) 65, 700, 764
TspDTI ATGAA 1 cut(s) 1438
TspGWI ACGGA 1 cut(s) 870
TspRI CASTG 2 cut(s) 722, 1471
Vha464I CTTAAG 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 934
XapI RAATTY 1 cut(s) 335
XceI RCATGY 2 cut(s) 712, 1111
XcmI CCANNNNNNNNNTGG 1 cut(s) 1532
XmnI GAANNNNTTC 1 cut(s) 381
XspI CTAG 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.