Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013758.1

Orthogroup ID

OG0012269

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 5268

Gene Structure 5268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013758.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

atggggttgatttcggggattctgatggggatggtgttcggaattgcgttgatggccggctggcgtcacatgatggcgtaccggagtaccaagcgagtcgctaaggcagttgatataaaactccttgggtcactaaacagagacgatttgaagaaaatttgtggggacaactttcctgagtggatttctttccccgtatttgaacaggtgaaatggttgaataagcagctgagcaaactatggccatttgttgcagatgcagcagagctggtgataaaagagtctgttgaaccactattggaagaatacagacctccaggaatctcatcattgaagtttagcaaactgtctcttggtactgtggcacccaaaattgaaggtattcgtgttcagagtcttaagaaaggtcaaatcacgatggacattgattttcgttggggtggtgatccaaacattgtattaggtgttgaagcacttgttgcttcaattcccattcagttgaaggatcttcaagtttttactgttgttcgcgtaatattccaactttccgaagagatcccttgtatttctgcggttgttgttgccctacttgcagaggctgttggtggaagcttaacagccctccctggaatatcggacatgattgatgatacagtcgagacgattgtcacagacatgctccagtggccgcataggatagttgttccaattggtgggttgcatgttgatacaagtgacttggagcttaaacctcagggaaagatcaccttaacagttgtcagagcgaatgatttaaagaacatggaaatgattggaaaatcagacccttatgttgttgtttacattcgtccaattttcaaggttaagaccaaggttattgacaacaatctgaatcctgtttgggaccaaacatttgagttgattgcagaagacaaggagacacaatcacttgtttttgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044232 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

320

Amino Acids

35.57

Weight (kDa)

5.44

Isoelectric Point (pI)

26.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61050 AT3G61050
fragaria_vesca	FvH4_7g12480 FvH4_7g12480
malus_domestica	MD02G1198800.v1.1
prunus_persica	Prupe.2G149400_v2.0.a1 Prupe.2G149400_v2.0.a1
pyrus_communis	pycom02g16290
rosa_chinensis	RchiOBHm_Chr1g0351321
rosa_laevigata	RLG00000028415
rosa_multiflora	Rmu_sc0004933.1_g000008 Rmu_sc0013758.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303880
rosa_rugosa	Rorug01G0217600
rosa_samantha	Rh1AG232000 Rh1BG202400 Rh1CG216800 Rh1DG229600
rosa_wichuraiana	Rw1G020210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	364
AccB7I	CCANNNNNTGG	1 cut(s)	713
AccII	CGCG	1 cut(s)	531
AciI	CCGC	2 cut(s)	572, 689
AclWI	GGATC	3 cut(s)	440, 513, 550
AcoI	YGGCCR	3 cut(s)	54, 242, 686
AcsI	RAATTY	1 cut(s)	156
AcyI	GRCGYC	1 cut(s)	64
AfaI	GTAC	3 cut(s)	80, 88, 358
AfiI	CCNNNNNNNGG	1 cut(s)	713
AflII	CTTAAG	1 cut(s)	398
AjnI	CCWGG	2 cut(s)	316, 625
AluBI	AGCT	4 cut(s)	229, 268, 612, 745
AluI	AGCT	4 cut(s)	229, 268, 612, 745
Alw26I	GTCTC	4 cut(s)	135, 354, 653, 932
AlwI	GGATC	3 cut(s)	440, 513, 550
AlwNI	CAGNNNCTG	1 cut(s)	599
AoxI	GGCC	3 cut(s)	54, 242, 686
ApeKI	GCWGC	2 cut(s)	226, 260
ApoI	RAATTY	1 cut(s)	156
ArsI	GACNNNNNNTTYG	2 cut(s)	896, 928
Asp700I	GAANNNNTTC	1 cut(s)	381
AspS9I	GGNCC	1 cut(s)	904
AsuHPI	GGTGA	4 cut(s)	220, 283, 455, 757
AvaII	GGWCC	1 cut(s)	904
AxyI	CCTNAGG	1 cut(s)	753
BaeI	ACNNNNGTAYC	2 cut(s)	70, 103
BalI	TGGCCA	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	364
BbsI	GAAGAC	1 cut(s)	936
BbvI	GCAGC	2 cut(s)	238, 272
BccI	CCATC	5 cut(s)	19, 25, 46, 67, 412
BciT130I	CCWGG	2 cut(s)	318, 627
BcoDI	GTCTC	4 cut(s)	135, 354, 653, 932
BfrI	CTTAAG	1 cut(s)	398
BisI	GCNGC	3 cut(s)	227, 261, 689
BlpI	GCTNAGC	1 cut(s)	230
BlsI	GCNGC	3 cut(s)	228, 262, 690
Bme1390I	CCNGG	2 cut(s)	318, 627
Bme18I	GGWCC	1 cut(s)	904
BmgT120I	GGNCC	1 cut(s)	904
BmiI	GGNNCC	2 cut(s)	366, 905
BmrFI	CCNGG	2 cut(s)	318, 627
BmsI	GCATC	1 cut(s)	247
BoxI	GACNNNNGTC	1 cut(s)	665
BpiI	GAAGAC	1 cut(s)	936
BpmI	CTGGAG	2 cut(s)	300, 665
Bpu10I	CCTNAGC	1 cut(s)	102
Bpu1102I	GCTNAGC	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	64
BsaJI	CCNNGG	3 cut(s)	124, 625, 870
BsaWI	WCCGGW	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	1 cut(s)	713
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	682
Bse21I	CCTNAGG	1 cut(s)	753
BseBI	CCWGG	2 cut(s)	318, 627
BseDI	CCNNGG	3 cut(s)	124, 625, 870
BseGI	GGATG	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	713
BseMII	CTCAG	3 cut(s)	168, 221, 767
BseNI	ACTGG	1 cut(s)	682
BseXI	GCAGC	2 cut(s)	238, 272
Bsh1236I	CGCG	1 cut(s)	531
BshFI	GGCC	3 cut(s)	56, 244, 688
BshNI	GGYRCC	1 cut(s)	364
BsiSI	CCGG	2 cut(s)	57, 82
BslFI	GGGAC	2 cut(s)	179, 917
BslI	CCNNNNNNNGG	1 cut(s)	713
BsmAI	GTCTC	4 cut(s)	135, 354, 653, 932
BsmBI	CGTCTC	2 cut(s)	135, 653
BsmFI	GGGAC	2 cut(s)	179, 917
BsnI	GGCC	3 cut(s)	56, 244, 688
Bsp143I	GATC	4 cut(s)	445, 505, 555, 762
Bsp1720I	GCTNAGC	1 cut(s)	230
BspACI	CCGC	2 cut(s)	572, 689
BspANI	GGCC	3 cut(s)	56, 244, 688
BspCNI	CTCAG	3 cut(s)	169, 222, 766
BspFNI	CGCG	1 cut(s)	531
BspLI	GGNNCC	2 cut(s)	366, 905
BspPI	GGATC	3 cut(s)	440, 513, 550
BspT107I	GGYRCC	1 cut(s)	364
BspTI	CTTAAG	1 cut(s)	398
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	682
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	3 cut(s)	124, 625, 870
BssMI	GATC	4 cut(s)	445, 505, 555, 762
BssNI	GRCGYC	1 cut(s)	64
BssT1I	CCWWGG	2 cut(s)	124, 870
Bst2UI	CCWGG	2 cut(s)	318, 627
Bst4CI	ACNGT	5 cut(s)	348, 361, 523, 655, 775
Bst6I	CTCTTC	1 cut(s)	546
BstACI	GRCGYC	1 cut(s)	64
BstAFI	CTTAAG	1 cut(s)	398
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstC8I	GCNNGC	2 cut(s)	58, 62
BstDEI	CTNAG	4 cut(s)	102, 177, 230, 753
BstF5I	GGATG	1 cut(s)	36
BstFNI	CGCG	1 cut(s)	531
BstKTI	GATC	4 cut(s)	448, 508, 558, 765
BstMAI	GTCTC	4 cut(s)	135, 354, 653, 932
BstMBI	GATC	4 cut(s)	445, 505, 555, 762
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 260, 479, 590, 685
BstNI	CCWGG	2 cut(s)	318, 627
BstNSI	RCATGY	2 cut(s)	679, 725
BstPAI	GACNNNNGTC	1 cut(s)	665
BstSCI	CCNGG	2 cut(s)	316, 625
BstUI	CGCG	1 cut(s)	531
BstV1I	GCAGC	2 cut(s)	238, 272
BstV2I	GAAGAC	1 cut(s)	936
BstX2I	RGATCY	2 cut(s)	505, 555
BstYI	RGATCY	2 cut(s)	505, 555
Bsu36I	CCTNAGG	1 cut(s)	753
BsuRI	GGCC	3 cut(s)	56, 244, 688
BtsCI	GGATG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	689
Cac8I	GCNNGC	2 cut(s)	58, 62
CaiI	CAGNNNCTG	1 cut(s)	599
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	904
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	3 cut(s)	79, 87, 357
CviAII	CATG	5 cut(s)	70, 640, 676, 722, 802
CviQI	GTAC	3 cut(s)	79, 87, 357
DdeI	CTNAG	4 cut(s)	102, 177, 230, 753
DpnI	GATC	4 cut(s)	447, 507, 557, 764
DpnII	GATC	4 cut(s)	445, 505, 555, 762
DraI	TTTAAA	1 cut(s)	795
EaeI	YGGCCR	3 cut(s)	54, 242, 686
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Eco130I	CCWWGG	2 cut(s)	124, 870
Eco47I	GGWCC	1 cut(s)	904
Eco81I	CCTNAGG	1 cut(s)	753
EcoRII	CCWGG	2 cut(s)	316, 625
EcoT14I	CCWWGG	2 cut(s)	124, 870
ErhI	CCWWGG	2 cut(s)	124, 870
Esp3I	CGTCTC	2 cut(s)	135, 653
FaeI	CATG	5 cut(s)	73, 643, 679, 725, 805
FaiI	YATR	9 cut(s)	71, 116, 241, 641, 677, 693, 723, 803, 831
FalI	AAGNNNNNCTT	2 cut(s)	752, 784
FaqI	GGGAC	2 cut(s)	179, 917
FatI	CATG	5 cut(s)	69, 639, 675, 721, 801
Fnu4HI	GCNGC	3 cut(s)	227, 261, 689
FokI	GGATG	1 cut(s)	43
Fsp4HI	GCNGC	3 cut(s)	227, 261, 689
GluI	GCNGC	3 cut(s)	227, 261, 689
GsuI	CTGGAG	2 cut(s)	300, 665
HaeIII	GGCC	3 cut(s)	56, 244, 688
HapII	CCGG	2 cut(s)	57, 82
HgaI	GACGC	1 cut(s)	53
Hin1I	GRCGYC	1 cut(s)	64
Hin1II	CATG	5 cut(s)	73, 643, 679, 725, 805
HindIII	AAGCTT	1 cut(s)	610
HinfI	GANTC	6 cut(s)	19, 96, 281, 321, 394, 892
HpaII	CCGG	2 cut(s)	57, 82
HphI	GGTGA	4 cut(s)	220, 283, 455, 757
Hpy166II	GTNNAC	1 cut(s)	841
Hpy188I	TCNGA	8 cut(s)	24, 41, 393, 550, 637, 782, 823, 891
Hpy188III	TCNNGA	3 cut(s)	176, 415, 658
Hpy8I	GTNNAC	1 cut(s)	841
HpyAV	CCTTC	2 cut(s)	371, 496
HpyCH4III	ACNGT	5 cut(s)	348, 361, 523, 655, 775
HpyCH4V	TGCA	5 cut(s)	254, 260, 593, 721, 926
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 260, 479, 590, 685
HpyF3I	CTNAG	4 cut(s)	102, 177, 230, 753
Hsp92I	GRCGYC	1 cut(s)	64
Hsp92II	CATG	5 cut(s)	73, 643, 679, 725, 805
KroI	GCCGGC	1 cut(s)	56
KroNI	GCCGGC	1 cut(s)	58
Kzo9I	GATC	4 cut(s)	445, 505, 555, 762
LmnI	GCTCC	2 cut(s)	684, 742
Lsp1109I	GCAGC	2 cut(s)	238, 272
LweI	GCATC	1 cut(s)	247
MaeIII	GTNAC	4 cut(s)	65, 129, 667, 734
MalI	GATC	4 cut(s)	447, 507, 557, 764
MboI	GATC	4 cut(s)	445, 505, 555, 762
MboII	GAAGA	5 cut(s)	163, 314, 500, 563, 941
MfeI	CAATTG	1 cut(s)	708
MflI	RGATCY	2 cut(s)	505, 555
MlsI	TGGCCA	1 cut(s)	244
MluCI	AATT	6 cut(s)	42, 156, 372, 486, 708, 852
MluNI	TGGCCA	1 cut(s)	244
MlyI	GAGTC	3 cut(s)	105, 290, 403
MmeI	TCCRAC	1 cut(s)	565
MnlI	CCTC	4 cut(s)	324, 589, 632, 762
Mox20I	TGGCCA	1 cut(s)	244
MroNI	GCCGGC	1 cut(s)	56
MroXI	GAANNNNTTC	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	244
MseI	TTAA	6 cut(s)	399, 614, 747, 770, 794, 864
MslI	CAYNNNNRTG	2 cut(s)	674, 806
Msp20I	TGGCCA	1 cut(s)	244
MspA1I	CMGCKG	1 cut(s)	229
MspCI	CTTAAG	1 cut(s)	398
MspI	CCGG	2 cut(s)	57, 82
MspR9I	CCNGG	2 cut(s)	318, 627
MunI	CAATTG	1 cut(s)	708
MvaI	CCWGG	2 cut(s)	318, 627
MvnI	CGCG	1 cut(s)	531
MwoI	GCNNNNNNNGC	5 cut(s)	53, 260, 479, 590, 685
NaeI	GCCGGC	1 cut(s)	58
NdeII	GATC	4 cut(s)	445, 505, 555, 762
NgoMIV	GCCGGC	1 cut(s)	56
NlaIII	CATG	5 cut(s)	73, 643, 679, 725, 805
NlaIV	GGNNCC	2 cut(s)	366, 905
NmuCI	GTSAC	4 cut(s)	65, 129, 667, 734
NspI	RCATGY	2 cut(s)	679, 725
PdiI	GCCGGC	1 cut(s)	58
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	3 cut(s)	19, 321, 892
PflMI	CCANNNNNTGG	1 cut(s)	713
PfoI	TCCNGGA	1 cut(s)	316
PkrI	GCNGC	3 cut(s)	228, 262, 690
PleI	GAGTC	3 cut(s)	104, 289, 402
PpsI	GAGTC	3 cut(s)	104, 289, 402
PshAI	GACNNNNGTC	1 cut(s)	665
Psp6I	CCWGG	2 cut(s)	316, 625
PspGI	CCWGG	2 cut(s)	316, 625
PspN4I	GGNNCC	2 cut(s)	366, 905
PspPI	GGNCC	1 cut(s)	904
PstNI	CAGNNNCTG	1 cut(s)	599
PsuI	RGATCY	2 cut(s)	505, 555
PvuII	CAGCTG	1 cut(s)	229
RsaI	GTAC	3 cut(s)	80, 88, 358
RsaNI	GTAC	3 cut(s)	79, 87, 357
RseI	CAYNNNNRTG	2 cut(s)	674, 806
SaqAI	TTAA	6 cut(s)	399, 614, 747, 770, 794, 864
SatI	GCNGC	3 cut(s)	227, 261, 689
Sau3AI	GATC	4 cut(s)	445, 505, 555, 762
Sau96I	GGNCC	1 cut(s)	904
SchI	GAGTC	3 cut(s)	105, 290, 403
ScrFI	CCNGG	2 cut(s)	318, 627
SfaNI	GCATC	1 cut(s)	247
SinI	GGWCC	1 cut(s)	904
SmiMI	CAYNNNNRTG	2 cut(s)	674, 806
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	6 cut(s)	42, 156, 372, 486, 708, 852
SsiI	CCGC	2 cut(s)	572, 689
SspI	AATATT	1 cut(s)	537
StyD4I	CCNGG	2 cut(s)	316, 625
StyI	CCWWGG	2 cut(s)	124, 870
TaaI	ACNGT	5 cut(s)	348, 361, 523, 655, 775
TaqI	TCGA	1 cut(s)	657
TasI	AATT	6 cut(s)	42, 156, 372, 486, 708, 852
TauI	GCSGC	1 cut(s)	691
TfiI	GAWTC	3 cut(s)	19, 321, 892
Tru1I	TTAA	6 cut(s)	399, 614, 747, 770, 794, 864
Tru9I	TTAA	6 cut(s)	399, 614, 747, 770, 794, 864
TscAI	CASTG	1 cut(s)	689
TseFI	GTSAC	4 cut(s)	65, 129, 667, 734
TseI	GCWGC	2 cut(s)	226, 260
Tsp45I	GTSAC	4 cut(s)	65, 129, 667, 734
TspRI	CASTG	1 cut(s)	689
Van91I	CCANNNNNTGG	1 cut(s)	713
Vha464I	CTTAAG	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	904
XapI	RAATTY	1 cut(s)	156
XceI	RCATGY	2 cut(s)	679, 725
XmnI	GAANNNNTTC	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.