Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0012269

Physical Location & Seq

Genomic Coordinates Forward (+)

46629345 .. 46636700

Gene Structure 7356 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG216800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGGGTTGATTTCGGGGATTCTGATGGGGATGGTGTTCGGAATTGCGTTGATGGCCGGCTGGCGTCACATGATGGCGTACCGGAGTACCAAGCGAGTCGCTAAGGCAGTTGATATAAAACTCCTTGGGTCACTAAACAGAGACGATTTGAAGAAAATTTGTGGGGACAACTTTCCTGAGTGGATTTCTTTCCCCGTATTTGAACAGGTGAAATGGTTGAATAAGCAGCTGAGCAAATTATGGCCATTTGTCGCAGATGCAGCAGAGCTGGTGATAAAAGAGTCTGTTGAACCACTATTGGAAGAATACAGACCTCCAGGAATCTCATCATTGAAGTTTAGCAAACTGTCTCTTGGTACTGTGGCACCCAAAATTGAAGGTATTCGTGTTCAGAGTCTTAAGAAAGGTCAAATCACGATGGACATTGATTTTCGTTGGGGTGGTGATCCAAACATTGTATTAGGTGTTGAAGCACTTGTTGCTTCAATTCCCATTCAGTTGAAGGATCTTCAAGTTTTTACTGTTGTTCGCGTAATATTCCAACTTTCCGAAGAGATCCCTTGTATTTCTGCGGTTGTTGTTGCCCTACTTGCAGAGCCAAAGCCTAGAATTGATTATACTCTGAAGGCTGTTGGTGGAAGCTTAACAGCCCTCCCTGGAATATCGGATATGATTGATGATACAGTCGAGACGATTGTCACAGACATGCTCCAGTGGCCGCATAGGATAGTTGTTCCAATTGGTGGGTTGCATGTTGATACAAGTGACTTGGAGCTTAAACCTCAGGGAAAGATCACCTTAACAGTTGTCAGAGCGAATGATTTAAAGAACATGGAAATGATTGGAAAATCAGACCCTTATGTTGTTGTTTACATTCGTCCAATTTTCAAGGTTAAGACCAAGGTTATTGACAACAATCTGAATCCTGTTTGGGACCAAACATTTGAGTTGATTGCAGAGGACAAGGAGACACAATCACTTGTTTTTGAGATTTTCGATGAGGACATTGGGCAAGACAAGCGATTGGGAGTAACAAAATTACCTTTGATCGATCTGGAAGCAGAAATTCCTAAAGAGATGGAACTGAGATTGCAGCCATCTCTTAACATGCTAAAAATAAAAGAAAAGAAGGACAGAGGAACACTTACGATTAGGGTAAGTGTTCAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044232 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

390

Amino Acids

43.69

Weight (kDa)

5.85

Isoelectric Point (pI)

27.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP_LBD	PF17047	68 - 247	1.4e-17	Synaptotagmin-like mitochondrial-lipid-binding domain
C2	PF00168	263 - 355	4.6e-23	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61050 AT3G61050
fragaria_vesca	FvH4_7g12480 FvH4_7g12480
malus_domestica	MD02G1198800.v1.1
prunus_persica	Prupe.2G149400_v2.0.a1 Prupe.2G149400_v2.0.a1
pyrus_communis	pycom02g16290
rosa_chinensis	RchiOBHm_Chr1g0351321
rosa_laevigata	RLG00000028415
rosa_multiflora	Rmu_sc0004933.1_g000008 Rmu_sc0013758.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303880
rosa_rugosa	Rorug01G0217600
rosa_samantha	Rh1AG232000 Rh1BG202400 Rh1CG216800 Rh1DG229600
rosa_wichuraiana	Rw1G020210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	364
AccB7I	CCANNNNNTGG	1 cut(s)	743
AccII	CGCG	1 cut(s)	531
AciI	CCGC	2 cut(s)	572, 719
AclWI	GGATC	3 cut(s)	440, 513, 550
AcoI	YGGCCR	3 cut(s)	54, 242, 716
AcsI	RAATTY	2 cut(s)	156, 1065
AcuI	CTGAAG	1 cut(s)	644
AcyI	GRCGYC	1 cut(s)	64
AfaI	GTAC	3 cut(s)	80, 88, 358
AfiI	CCNNNNNNNGG	1 cut(s)	743
AflII	CTTAAG	1 cut(s)	398
AjnI	CCWGG	2 cut(s)	316, 655
AluBI	AGCT	4 cut(s)	229, 268, 642, 775
AluI	AGCT	4 cut(s)	229, 268, 642, 775
Alw26I	GTCTC	4 cut(s)	135, 354, 683, 962
AlwI	GGATC	3 cut(s)	440, 513, 550
AoxI	GGCC	3 cut(s)	54, 242, 716
ApeKI	GCWGC	3 cut(s)	226, 260, 1093
ApoI	RAATTY	2 cut(s)	156, 1065
ArsI	GACNNNNNNTTYG	2 cut(s)	926, 958
Asp700I	GAANNNNTTC	1 cut(s)	381
AspS9I	GGNCC	1 cut(s)	934
AsuHPI	GGTGA	4 cut(s)	220, 283, 455, 787
AvaII	GGWCC	1 cut(s)	934
AxyI	CCTNAGG	1 cut(s)	783
BaeI	ACNNNNGTAYC	2 cut(s)	70, 103
BalI	TGGCCA	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	364
BbvI	GCAGC	3 cut(s)	238, 272, 1105
BccI	CCATC	7 cut(s)	19, 25, 46, 67, 412, 1072, 1105
BciT130I	CCWGG	2 cut(s)	318, 657
BcoDI	GTCTC	4 cut(s)	135, 354, 683, 962
BfaI	CTAG	1 cut(s)	606
BfrI	CTTAAG	1 cut(s)	398
BisI	GCNGC	4 cut(s)	227, 261, 719, 1094
BlpI	GCTNAGC	1 cut(s)	230
BlsI	GCNGC	4 cut(s)	228, 262, 720, 1095
Bme1390I	CCNGG	2 cut(s)	318, 657
Bme18I	GGWCC	1 cut(s)	934
BmgT120I	GGNCC	1 cut(s)	934
BmiI	GGNNCC	2 cut(s)	366, 935
BmrFI	CCNGG	2 cut(s)	318, 657
BmsI	GCATC	1 cut(s)	247
BoxI	GACNNNNGTC	1 cut(s)	695
BpmI	CTGGAG	2 cut(s)	300, 695
Bpu10I	CCTNAGC	1 cut(s)	102
Bpu1102I	GCTNAGC	1 cut(s)	230
Bsa29I	ATCGAT	1 cut(s)	1050
BsaHI	GRCGYC	1 cut(s)	64
BsaJI	CCNNGG	3 cut(s)	124, 655, 900
BsaWI	WCCGGW	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	1 cut(s)	743
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	712
Bse21I	CCTNAGG	1 cut(s)	783
BseBI	CCWGG	2 cut(s)	318, 657
BseCI	ATCGAT	1 cut(s)	1050
BseDI	CCNNGG	3 cut(s)	124, 655, 900
BseGI	GGATG	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	743
BseMII	CTCAG	4 cut(s)	168, 221, 797, 1076
BseNI	ACTGG	1 cut(s)	712
BseXI	GCAGC	3 cut(s)	238, 272, 1105
Bsh1236I	CGCG	1 cut(s)	531
BshFI	GGCC	3 cut(s)	56, 244, 718
BshNI	GGYRCC	1 cut(s)	364
BshVI	ATCGAT	1 cut(s)	1050
BsiSI	CCGG	2 cut(s)	57, 82
BslFI	GGGAC	2 cut(s)	179, 947
BslI	CCNNNNNNNGG	1 cut(s)	743
BsmAI	GTCTC	4 cut(s)	135, 354, 683, 962
BsmBI	CGTCTC	2 cut(s)	135, 683
BsmFI	GGGAC	2 cut(s)	179, 947
BsnI	GGCC	3 cut(s)	56, 244, 718
Bsp143I	GATC	6 cut(s)	445, 505, 555, 792, 1047, 1051
Bsp1720I	GCTNAGC	1 cut(s)	230
BspACI	CCGC	2 cut(s)	572, 719
BspANI	GGCC	3 cut(s)	56, 244, 718
BspCNI	CTCAG	4 cut(s)	169, 222, 796, 1077
BspDI	ATCGAT	1 cut(s)	1050
BspFNI	CGCG	1 cut(s)	531
BspLI	GGNNCC	2 cut(s)	366, 935
BspPI	GGATC	3 cut(s)	440, 513, 550
BspT107I	GGYRCC	1 cut(s)	364
BspTI	CTTAAG	1 cut(s)	398
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	712
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	3 cut(s)	124, 655, 900
BssMI	GATC	6 cut(s)	445, 505, 555, 792, 1047, 1051
BssNI	GRCGYC	1 cut(s)	64
BssT1I	CCWWGG	2 cut(s)	124, 900
Bst2UI	CCWGG	2 cut(s)	318, 657
Bst4CI	ACNGT	5 cut(s)	348, 361, 523, 685, 805
Bst6I	CTCTTC	1 cut(s)	546
BstACI	GRCGYC	1 cut(s)	64
BstAFI	CTTAAG	1 cut(s)	398
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstC8I	GCNNGC	2 cut(s)	58, 62
BstDEI	CTNAG	5 cut(s)	102, 177, 230, 783, 1085
BstF5I	GGATG	1 cut(s)	36
BstFNI	CGCG	1 cut(s)	531
BstKTI	GATC	6 cut(s)	448, 508, 558, 795, 1050, 1054
BstMAI	GTCTC	4 cut(s)	135, 354, 683, 962
BstMBI	GATC	6 cut(s)	445, 505, 555, 792, 1047, 1051
BstMWI	GCNNNNNNNGC	6 cut(s)	53, 260, 479, 590, 715, 1018
BstNI	CCWGG	2 cut(s)	318, 657
BstNSI	RCATGY	3 cut(s)	709, 755, 1111
BstPAI	GACNNNNGTC	1 cut(s)	695
BstSCI	CCNGG	2 cut(s)	316, 655
BstUI	CGCG	1 cut(s)	531
BstV1I	GCAGC	3 cut(s)	238, 272, 1105
BstX2I	RGATCY	2 cut(s)	505, 555
BstYI	RGATCY	2 cut(s)	505, 555
Bsu15I	ATCGAT	1 cut(s)	1050
Bsu36I	CCTNAGG	1 cut(s)	783
BsuRI	GGCC	3 cut(s)	56, 244, 718
BsuTUI	ATCGAT	1 cut(s)	1050
BtsCI	GGATG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	719
Cac8I	GCNNGC	2 cut(s)	58, 62
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	934
ClaI	ATCGAT	1 cut(s)	1050
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	3 cut(s)	79, 87, 357
CviAII	CATG	5 cut(s)	70, 706, 752, 832, 1108
CviQI	GTAC	3 cut(s)	79, 87, 357
DdeI	CTNAG	5 cut(s)	102, 177, 230, 783, 1085
DpnI	GATC	6 cut(s)	447, 507, 557, 794, 1049, 1053
DpnII	GATC	6 cut(s)	445, 505, 555, 792, 1047, 1051
DraI	TTTAAA	1 cut(s)	825
EaeI	YGGCCR	3 cut(s)	54, 242, 716
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Eco130I	CCWWGG	2 cut(s)	124, 900
Eco47I	GGWCC	1 cut(s)	934
Eco57I	CTGAAG	1 cut(s)	644
Eco81I	CCTNAGG	1 cut(s)	783
EcoRII	CCWGG	2 cut(s)	316, 655
EcoT14I	CCWWGG	2 cut(s)	124, 900
ErhI	CCWWGG	2 cut(s)	124, 900
Esp3I	CGTCTC	2 cut(s)	135, 683
FaeI	CATG	5 cut(s)	73, 709, 755, 835, 1111
FalI	AAGNNNNNCTT	2 cut(s)	782, 814
FaqI	GGGAC	2 cut(s)	179, 947
FatI	CATG	5 cut(s)	69, 705, 751, 831, 1107
Fnu4HI	GCNGC	4 cut(s)	227, 261, 719, 1094
FokI	GGATG	1 cut(s)	43
Fsp4HI	GCNGC	4 cut(s)	227, 261, 719, 1094
FspBI	CTAG	1 cut(s)	606
GluI	GCNGC	4 cut(s)	227, 261, 719, 1094
GsuI	CTGGAG	2 cut(s)	300, 695
HaeIII	GGCC	3 cut(s)	56, 244, 718
HapII	CCGG	2 cut(s)	57, 82
HgaI	GACGC	1 cut(s)	53
Hin1I	GRCGYC	1 cut(s)	64
Hin1II	CATG	5 cut(s)	73, 709, 755, 835, 1111
HindIII	AAGCTT	1 cut(s)	640
HinfI	GANTC	6 cut(s)	19, 96, 281, 321, 394, 922
HpaII	CCGG	2 cut(s)	57, 82
HphI	GGTGA	4 cut(s)	220, 283, 455, 787
Hpy166II	GTNNAC	1 cut(s)	871
Hpy188I	TCNGA	9 cut(s)	24, 41, 393, 550, 624, 667, 812, 853, 921
Hpy188III	TCNNGA	4 cut(s)	176, 415, 688, 1055
Hpy8I	GTNNAC	1 cut(s)	871
HpyAV	CCTTC	4 cut(s)	371, 496, 619, 1123
HpyCH4III	ACNGT	5 cut(s)	348, 361, 523, 685, 805
HpyCH4V	TGCA	5 cut(s)	260, 593, 751, 956, 1093
HpyF10VI	GCNNNNNNNGC	6 cut(s)	53, 260, 479, 590, 715, 1018
HpyF3I	CTNAG	5 cut(s)	102, 177, 230, 783, 1085
Hsp92I	GRCGYC	1 cut(s)	64
Hsp92II	CATG	5 cut(s)	73, 709, 755, 835, 1111
KroI	GCCGGC	1 cut(s)	56
KroNI	GCCGGC	1 cut(s)	58
Kzo9I	GATC	6 cut(s)	445, 505, 555, 792, 1047, 1051
LmnI	GCTCC	2 cut(s)	714, 772
Lsp1109I	GCAGC	3 cut(s)	238, 272, 1105
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	1 cut(s)	606
MaeIII	GTNAC	5 cut(s)	65, 129, 697, 764, 1030
MalI	GATC	6 cut(s)	447, 507, 557, 794, 1049, 1053
MboI	GATC	6 cut(s)	445, 505, 555, 792, 1047, 1051
MboII	GAAGA	4 cut(s)	163, 314, 500, 563
MfeI	CAATTG	1 cut(s)	738
MflI	RGATCY	2 cut(s)	505, 555
MlsI	TGGCCA	1 cut(s)	244
MluNI	TGGCCA	1 cut(s)	244
MlyI	GAGTC	3 cut(s)	105, 290, 403
MmeI	TCCRAC	1 cut(s)	565
MnlI	CCTC	6 cut(s)	324, 662, 792, 952, 994, 1130
Mox20I	TGGCCA	1 cut(s)	244
MroNI	GCCGGC	1 cut(s)	56
MroXI	GAANNNNTTC	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	244
MseI	TTAA	7 cut(s)	399, 644, 777, 800, 824, 894, 1104
MslI	CAYNNNNRTG	2 cut(s)	704, 836
Msp20I	TGGCCA	1 cut(s)	244
MspA1I	CMGCKG	1 cut(s)	229
MspCI	CTTAAG	1 cut(s)	398
MspI	CCGG	2 cut(s)	57, 82
MspR9I	CCNGG	2 cut(s)	318, 657
MunI	CAATTG	1 cut(s)	738
MvaI	CCWGG	2 cut(s)	318, 657
MvnI	CGCG	1 cut(s)	531
MwoI	GCNNNNNNNGC	6 cut(s)	53, 260, 479, 590, 715, 1018
NaeI	GCCGGC	1 cut(s)	58
NdeII	GATC	6 cut(s)	445, 505, 555, 792, 1047, 1051
NgoMIV	GCCGGC	1 cut(s)	56
NlaIII	CATG	5 cut(s)	73, 709, 755, 835, 1111
NlaIV	GGNNCC	2 cut(s)	366, 935
NmuCI	GTSAC	4 cut(s)	65, 129, 697, 764
NspI	RCATGY	3 cut(s)	709, 755, 1111
PdiI	GCCGGC	1 cut(s)	58
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	3 cut(s)	19, 321, 922
PflMI	CCANNNNNTGG	1 cut(s)	743
PfoI	TCCNGGA	1 cut(s)	316
PkrI	GCNGC	4 cut(s)	228, 262, 720, 1095
PleI	GAGTC	3 cut(s)	104, 289, 402
PpsI	GAGTC	3 cut(s)	104, 289, 402
PshAI	GACNNNNGTC	1 cut(s)	695
Psp6I	CCWGG	2 cut(s)	316, 655
PspGI	CCWGG	2 cut(s)	316, 655
PspN4I	GGNNCC	2 cut(s)	366, 935
PspPI	GGNCC	1 cut(s)	934
PsuI	RGATCY	2 cut(s)	505, 555
PvuII	CAGCTG	1 cut(s)	229
RsaI	GTAC	3 cut(s)	80, 88, 358
RsaNI	GTAC	3 cut(s)	79, 87, 357
RseI	CAYNNNNRTG	2 cut(s)	704, 836
SaqAI	TTAA	7 cut(s)	399, 644, 777, 800, 824, 894, 1104
SatI	GCNGC	4 cut(s)	227, 261, 719, 1094
Sau3AI	GATC	6 cut(s)	445, 505, 555, 792, 1047, 1051
Sau96I	GGNCC	1 cut(s)	934
SchI	GAGTC	3 cut(s)	105, 290, 403
ScrFI	CCNGG	2 cut(s)	318, 657
SfaNI	GCATC	1 cut(s)	247
SinI	GGWCC	1 cut(s)	934
SmiMI	CAYNNNNRTG	2 cut(s)	704, 836
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
SsiI	CCGC	2 cut(s)	572, 719
SspI	AATATT	1 cut(s)	537
SspMI	CTAG	1 cut(s)	606
StyD4I	CCNGG	2 cut(s)	316, 655
StyI	CCWWGG	2 cut(s)	124, 900
TaaI	ACNGT	5 cut(s)	348, 361, 523, 685, 805
TaqI	TCGA	3 cut(s)	687, 996, 1050
TauI	GCSGC	1 cut(s)	721
TfiI	GAWTC	3 cut(s)	19, 321, 922
Tru1I	TTAA	7 cut(s)	399, 644, 777, 800, 824, 894, 1104
Tru9I	TTAA	7 cut(s)	399, 644, 777, 800, 824, 894, 1104
TscAI	CASTG	1 cut(s)	719
TseFI	GTSAC	4 cut(s)	65, 129, 697, 764
TseI	GCWGC	3 cut(s)	226, 260, 1093
Tsp45I	GTSAC	4 cut(s)	65, 129, 697, 764
TspRI	CASTG	1 cut(s)	719
Van91I	CCANNNNNTGG	1 cut(s)	743
Vha464I	CTTAAG	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	934
XapI	RAATTY	2 cut(s)	156, 1065
XceI	RCATGY	3 cut(s)	709, 755, 1111
XmnI	GAANNNNTTC	1 cut(s)	381
XspI	CTAG	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.