Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012269

Physical Location & Seq

Genomic Coordinates Forward (+)

31135743 .. 31138091

Gene Structure 2349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0217600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGCTGGCCCTTCGCCTAACTTCAACAACTAAAACCCTCCGTTCACATTTTCTCTCCACCTTCTCCAAAATCGCAATGGACGCCTCCGGCGGTCAAACCCAGCCCCACCGCAACGACTCCGACCATTCCTCCGCCCACCACCACCAAAACGTCGTCGTCATGCGTCACGGCGACCGCATCGACAACTTCGAGCCCCGCTGGATCAAAAACGCCGCCCGCCCGTGGGACCCGCCTCTCGTGGAGGAGGGCCGGGTCCGGGCCTTCTGCAAGGGCGCGAAGCTCCGGTCCGATCTCGGGTTCCCGGTCCACCGCGTGTTCGTGTCGCCGTTCGTGCGCTGCGTGGAGACCGCCGTCCAGGTCGTCACCGCGCTCTCCGCTAGCGAGACGCCGTCGTTGGACAAATACGACAGTCGTAAACCCCTCCCCGTCGATCCCTCCAAGCTCAAGGTCTCAATTGAATATGGCTTGTGTGAGATGCTAAATAGAGAGGCCATTCGTGGTGATGTAGCTCCAAAAGATGGAAATTGGGGTTTCAACATCCCAGAACTTGAAGCCATGTTCCCAGAAGGGACGGTGGATCGCACCGTGGAAAGAGTTTACAAAGAGTTGCCCCAGTGGGGAGAGAGTGTGGTGGATGCAAGGTCAAGGTATGCTAATGTGGTTCAGGCCCTTGCAGATAAACACCCTATGGAAAATTTGCTTCTTGTCACTCACGGTGAAGGAGTCGGTGCCTCAATTAGTTCATTCCTGGAGGGTGCCACAGTATATGAAGCAGAGTACTGTGCATATTCAGAACTACGAAGGCCCATCTTCTGCAATGACCAGTCATCGACTGCTGGAAAGTTTGAGGTATTGACAAATCTTGGTCAGACTGGTATCAGTTACTCTCTTGCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044232 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

299

Amino Acids

33.25

Weight (kDa)

6.37

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_Phos_1	PF00300	185 - 250	2.3e-06	Histidine phosphatase superfamily (branch 1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61050 AT3G61050
fragaria_vesca	FvH4_7g12480 FvH4_7g12480
malus_domestica	MD02G1198800.v1.1
prunus_persica	Prupe.2G149400_v2.0.a1 Prupe.2G149400_v2.0.a1
pyrus_communis	pycom02g16290
rosa_chinensis	RchiOBHm_Chr1g0351321
rosa_laevigata	RLG00000028415
rosa_multiflora	Rmu_sc0004933.1_g000008 Rmu_sc0013758.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303880
rosa_rugosa	Rorug01G0217600
rosa_samantha	Rh1AG232000 Rh1BG202400 Rh1CG216800 Rh1DG229600
rosa_wichuraiana	Rw1G020210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	728, 755
AccB7I	CCANNNNNTGG	1 cut(s)	518
AccII	CGCG	3 cut(s)	275, 312, 368
AclWI	GGATC	3 cut(s)	209, 425, 585
AcsI	RAATTY	1 cut(s)	694
AcyI	GRCGYC	2 cut(s)	81, 386
AdeI	CACNNNGTG	1 cut(s)	313
AfaI	GTAC	1 cut(s)	779
AfiI	CCNNNNNNNGG	6 cut(s)	222, 223, 256, 294, 518, 617
AgsI	TTSAA	4 cut(s)	24, 458, 535, 551
AjnI	CCWGG	2 cut(s)	354, 747
AluBI	AGCT	3 cut(s)	280, 442, 509
AluI	AGCT	3 cut(s)	280, 442, 509
Alw26I	GTCTC	3 cut(s)	338, 377, 454
AlwI	GGATC	3 cut(s)	209, 425, 585
Ama87I	CYCGRG	1 cut(s)	293
AoxI	GGCC	6 cut(s)	6, 247, 258, 489, 666, 803
ApeKI	GCWGC	1 cut(s)	336
ApoI	RAATTY	1 cut(s)	694
ArsI	GACNNNNNNTTYG	2 cut(s)	269, 301
AspLEI	GCGC	3 cut(s)	275, 336, 370
AspS9I	GGNCC	9 cut(s)	7, 226, 247, 253, 258, 285, 304, 667, 804
AsuC2I	CCSGG	3 cut(s)	251, 257, 302
AsuHPI	GGTGA	3 cut(s)	355, 512, 728
AsuNHI	GCTAGC	1 cut(s)	377
AvaI	CYCGRG	1 cut(s)	293
AvaII	GGWCC	4 cut(s)	226, 253, 285, 304
BanI	GGYRCC	2 cut(s)	728, 755
BanII	GRGCYC	1 cut(s)	195
BauI	CACGAG	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	2 cut(s)	512, 815
BceAI	ACGGC	4 cut(s)	184, 310, 335, 373
BciT130I	CCWGG	2 cut(s)	356, 749
BcnI	CCSGG	3 cut(s)	251, 257, 302
BcoDI	GTCTC	3 cut(s)	338, 377, 454
BfaI	CTAG	1 cut(s)	378
BisI	GCNGC	2 cut(s)	213, 337
BlsI	GCNGC	2 cut(s)	214, 338
BmcAI	AGTACT	1 cut(s)	779
Bme1390I	CCNGG	5 cut(s)	251, 257, 302, 356, 749
Bme18I	GGWCC	4 cut(s)	226, 253, 285, 304
BmeT110I	CYCGRG	1 cut(s)	293
BmgT120I	GGNCC	9 cut(s)	7, 226, 247, 253, 258, 285, 304, 667, 804
BmiI	GGNNCC	6 cut(s)	227, 228, 254, 299, 730, 757
BmrFI	CCNGG	5 cut(s)	251, 257, 302, 356, 749
BmrI	ACTGGG	1 cut(s)	607
BmsI	GCATC	3 cut(s)	186, 465, 625
BmtI	GCTAGC	1 cut(s)	381
BmuI	ACTGGG	1 cut(s)	607
BoxI	GACNNNNGTC	1 cut(s)	350
BpmI	CTGGAG	1 cut(s)	770
BpuEI	CTTGAG	1 cut(s)	428
BpuMI	CCSGG	3 cut(s)	251, 257, 302
BsaHI	GRCGYC	2 cut(s)	81, 386
BsaI	GGTCTC	2 cut(s)	338, 454
BsaJI	CCNNGG	2 cut(s)	221, 585
BsaWI	WCCGGW	1 cut(s)	282
BsaXI	ACNNNNNCTCC	4 cut(s)	113, 143, 612, 642
Bsc4I	CCNNNNNNNGG	6 cut(s)	222, 223, 256, 294, 518, 617
Bse1I	ACTGG	3 cut(s)	613, 823, 877
Bse3DI	GCAATG	2 cut(s)	81, 823
BseBI	CCWGG	2 cut(s)	356, 749
BseDI	CCNNGG	2 cut(s)	221, 585
BseGI	GGATG	2 cut(s)	537, 640
BseLI	CCNNNNNNNGG	6 cut(s)	222, 223, 256, 294, 518, 617
BseMI	GCAATG	2 cut(s)	81, 823
BseNI	ACTGG	3 cut(s)	613, 823, 877
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	323
BseYI	CCCAGC	1 cut(s)	99
Bsh1236I	CGCG	3 cut(s)	275, 312, 368
Bsh1285I	CGRYCG	1 cut(s)	175
BshFI	GGCC	6 cut(s)	8, 249, 260, 491, 668, 805
BshNI	GGYRCC	2 cut(s)	728, 755
BsiEI	CGRYCG	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	5 cut(s)	87, 250, 256, 283, 302
BslFI	GGGAC	2 cut(s)	239, 583
BslI	CCNNNNNNNGG	6 cut(s)	222, 223, 256, 294, 518, 617
BsmAI	GTCTC	3 cut(s)	338, 377, 454
BsmBI	CGTCTC	1 cut(s)	377
BsmFI	GGGAC	2 cut(s)	239, 583
BsnI	GGCC	6 cut(s)	8, 249, 260, 491, 668, 805
Bso31I	GGTCTC	2 cut(s)	338, 454
BsoBI	CYCGRG	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	4 cut(s)	201, 289, 430, 577
BspANI	GGCC	6 cut(s)	8, 249, 260, 491, 668, 805
BspFNI	CGCG	3 cut(s)	275, 312, 368
BspLI	GGNNCC	6 cut(s)	227, 228, 254, 299, 730, 757
BspOI	GCTAGC	1 cut(s)	381
BspPI	GGATC	3 cut(s)	209, 425, 585
BspT107I	GGYRCC	2 cut(s)	728, 755
BspTNI	GGTCTC	2 cut(s)	338, 454
BsrDI	GCAATG	2 cut(s)	81, 823
BsrI	ACTGG	3 cut(s)	613, 823, 877
BssECI	CCNNGG	2 cut(s)	221, 585
BssMI	GATC	4 cut(s)	201, 289, 430, 577
BssNI	GRCGYC	2 cut(s)	81, 386
BssSI	CACGAG	1 cut(s)	236
Bst2BI	CACGAG	1 cut(s)	236
Bst2UI	CCWGG	2 cut(s)	356, 749
Bst4CI	ACNGT	6 cut(s)	410, 574, 586, 716, 763, 782
BstACI	GRCGYC	2 cut(s)	81, 386
BstC8I	GCNNGC	3 cut(s)	6, 217, 379
BstDSI	CCRYGG	2 cut(s)	221, 585
BstF5I	GGATG	2 cut(s)	537, 640
BstFNI	CGCG	3 cut(s)	275, 312, 368
BstHHI	GCGC	3 cut(s)	275, 336, 370
BstKTI	GATC	4 cut(s)	204, 292, 433, 580
BstMAI	GTCTC	3 cut(s)	338, 377, 454
BstMBI	GATC	4 cut(s)	201, 289, 430, 577
BstMCI	CGRYCG	1 cut(s)	175
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 331, 374
BstNI	CCWGG	2 cut(s)	356, 749
BstPAI	GACNNNNGTC	1 cut(s)	350
BstSCI	CCNGG	5 cut(s)	249, 255, 300, 354, 747
BstUI	CGCG	3 cut(s)	275, 312, 368
BstV1I	GCAGC	1 cut(s)	323
BsuRI	GGCC	6 cut(s)	8, 249, 260, 491, 668, 805
BtgI	CCRYGG	2 cut(s)	221, 585
BtsCI	GGATG	2 cut(s)	537, 640
BtsIMutI	CAGTG	1 cut(s)	620
Cac8I	GCNNGC	3 cut(s)	6, 217, 379
CfoI	GCGC	3 cut(s)	275, 336, 370
Cfr13I	GGNCC	9 cut(s)	7, 226, 247, 253, 258, 285, 304, 667, 804
CpoI	CGGWCCG	1 cut(s)	285
CseI	GACGC	3 cut(s)	89, 152, 394
Csp6I	GTAC	1 cut(s)	778
CspI	CGGWCCG	1 cut(s)	285
CviAII	CATG	2 cut(s)	160, 556
CviQI	GTAC	1 cut(s)	778
DpnI	GATC	4 cut(s)	203, 291, 432, 579
DpnII	GATC	4 cut(s)	201, 289, 430, 577
DraIII	CACNNNGTG	1 cut(s)	313
EciI	GGCGGA	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	195
Eco31I	GGTCTC	2 cut(s)	338, 454
Eco47I	GGWCC	4 cut(s)	226, 253, 285, 304
Eco88I	CYCGRG	1 cut(s)	293
EcoO109I	RGGNCCY	2 cut(s)	226, 667
EcoRII	CCWGG	2 cut(s)	354, 747
EcoT38I	GRGCYC	1 cut(s)	195
Esp3I	CGTCTC	1 cut(s)	377
FaeI	CATG	2 cut(s)	163, 559
FaiI	YATR	8 cut(s)	161, 462, 557, 651, 689, 766, 768, 787
FaqI	GGGAC	2 cut(s)	239, 583
FatI	CATG	2 cut(s)	159, 555
FauI	CCCGC	3 cut(s)	203, 224, 237
Fnu4HI	GCNGC	2 cut(s)	213, 337
FokI	GGATG	2 cut(s)	524, 647
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	2 cut(s)	213, 337
FspBI	CTAG	1 cut(s)	378
GlaI	GCGC	3 cut(s)	274, 335, 369
GluI	GCNGC	2 cut(s)	213, 337
GsaI	CCCAGC	1 cut(s)	103
GsuI	CTGGAG	1 cut(s)	770
HaeIII	GGCC	6 cut(s)	8, 249, 260, 491, 668, 805
HapII	CCGG	5 cut(s)	87, 250, 256, 283, 302
HgaI	GACGC	3 cut(s)	89, 152, 394
HhaI	GCGC	3 cut(s)	275, 336, 370
Hin1I	GRCGYC	2 cut(s)	81, 386
Hin1II	CATG	2 cut(s)	163, 559
Hin6I	GCGC	3 cut(s)	273, 334, 368
HinP1I	GCGC	3 cut(s)	273, 334, 368
HinfI	GANTC	2 cut(s)	116, 723
HpaII	CCGG	5 cut(s)	87, 250, 256, 283, 302
HphI	GGTGA	3 cut(s)	355, 512, 728
Hpy166II	GTNNAC	4 cut(s)	44, 307, 416, 598
Hpy188I	TCNGA	4 cut(s)	121, 289, 793, 870
Hpy8I	GTNNAC	4 cut(s)	44, 307, 416, 598
Hpy99I	CGWCG	4 cut(s)	155, 158, 394, 431
HpyAV	CCTTC	6 cut(s)	20, 70, 271, 560, 713, 795
HpyCH4III	ACNGT	6 cut(s)	410, 574, 586, 716, 763, 782
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	6 cut(s)	267, 638, 674, 785, 816, 893
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 331, 374
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	2 cut(s)	81, 386
Hsp92II	CATG	2 cut(s)	163, 559
HspAI	GCGC	3 cut(s)	273, 334, 368
KflI	GGGWCCC	1 cut(s)	226
Kzo9I	GATC	4 cut(s)	201, 289, 430, 577
LmnI	GCTCC	2 cut(s)	285, 514
Lsp1109I	GCAGC	1 cut(s)	323
LweI	GCATC	3 cut(s)	186, 465, 625
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	4 cut(s)	164, 361, 706, 881
MalI	GATC	4 cut(s)	203, 291, 432, 579
MboI	GATC	4 cut(s)	201, 289, 430, 577
MboII	GAAGA	1 cut(s)	802
MfeI	CAATTG	1 cut(s)	453
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	4 cut(s)	453, 523, 694, 735
MlyI	GAGTC	2 cut(s)	110, 732
MmeI	TCCRAC	2 cut(s)	144, 375
MspA1I	CMGCKG	1 cut(s)	198
MspI	CCGG	5 cut(s)	87, 250, 256, 283, 302
MspR9I	CCNGG	5 cut(s)	251, 257, 302, 356, 749
MunI	CAATTG	1 cut(s)	453
MvaI	CCWGG	2 cut(s)	356, 749
MvnI	CGCG	3 cut(s)	275, 312, 368
MwoI	GCNNNNNNNGC	3 cut(s)	80, 331, 374
NciI	CCSGG	3 cut(s)	251, 257, 302
NdeII	GATC	4 cut(s)	201, 289, 430, 577
NheI	GCTAGC	1 cut(s)	377
NlaIII	CATG	2 cut(s)	163, 559
NlaIV	GGNNCC	6 cut(s)	227, 228, 254, 299, 730, 757
NmuCI	GTSAC	3 cut(s)	164, 361, 706
PcsI	WCGNNNNNNNCGW	2 cut(s)	186, 336
PflFI	GACNNNGTC	1 cut(s)	388
PflMI	CCANNNNNTGG	1 cut(s)	518
PfoI	TCCNGGA	1 cut(s)	747
PkrI	GCNGC	2 cut(s)	214, 338
PleI	GAGTC	2 cut(s)	110, 731
PpsI	GAGTC	2 cut(s)	110, 731
PpuMI	RGGWCCY	1 cut(s)	226
PshAI	GACNNNNGTC	1 cut(s)	350
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	2 cut(s)	354, 747
PspFI	CCCAGC	1 cut(s)	99
PspGI	CCWGG	2 cut(s)	354, 747
PspN4I	GGNNCC	6 cut(s)	227, 228, 254, 299, 730, 757
PspPI	GGNCC	9 cut(s)	7, 226, 247, 253, 258, 285, 304, 667, 804
PspPPI	RGGWCCY	1 cut(s)	226
PsyI	GACNNNGTC	1 cut(s)	388
RsaI	GTAC	1 cut(s)	779
RsaNI	GTAC	1 cut(s)	778
Rsr2I	CGGWCCG	1 cut(s)	285
RsrII	CGGWCCG	1 cut(s)	285
SatI	GCNGC	2 cut(s)	213, 337
Sau3AI	GATC	4 cut(s)	201, 289, 430, 577
Sau96I	GGNCC	9 cut(s)	7, 226, 247, 253, 258, 285, 304, 667, 804
ScaI	AGTACT	1 cut(s)	779
SchI	GAGTC	2 cut(s)	110, 732
ScrFI	CCNGG	5 cut(s)	251, 257, 302, 356, 749
SduI	GDGCHC	1 cut(s)	195
SfaNI	GCATC	3 cut(s)	186, 465, 625
SinI	GGWCC	4 cut(s)	226, 253, 285, 304
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	4 cut(s)	453, 523, 694, 735
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	5 cut(s)	249, 255, 300, 354, 747
TaaI	ACNGT	6 cut(s)	410, 574, 586, 716, 763, 782
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	4 cut(s)	180, 189, 429, 830
TasI	AATT	4 cut(s)	453, 523, 694, 735
TatI	WGTACW	1 cut(s)	777
TauI	GCSGC	1 cut(s)	215
TscAI	CASTG	1 cut(s)	620
TseFI	GTSAC	3 cut(s)	164, 361, 706
TseI	GCWGC	1 cut(s)	336
Tsp45I	GTSAC	3 cut(s)	164, 361, 706
TspDTI	ATGAA	2 cut(s)	732, 783
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	1 cut(s)	620
Tth111I	GACNNNGTC	1 cut(s)	388
Van91I	CCANNNNNTGG	1 cut(s)	518
VpaK11BI	GGWCC	4 cut(s)	226, 253, 285, 304
XapI	RAATTY	1 cut(s)	694
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XspI	CTAG	1 cut(s)	378
ZrmI	AGTACT	1 cut(s)	779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.