Rmu_sc0004933.1_g000008

Synaptotagmin-like mitochondrial-lipid-binding domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004933.1
Physical Location & Seq
Forward (+)
19802 .. 26342
6541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004933.1_g000008.1.cds

Sequence Viewer

Length: 1557 bp
atggggttgatttcggggattctgatggggatggtgttcggaattgcgttgatggccggctggcgtcacatgatggcgtaccggagtaccaagcgagtcgctaaggcagttgatataaaactccttgggtcactaaacagagacgatttgaagaaaatttgtggggacaactttcctgagtggatttctttccccgtatttgaacaggtgaaatggttgaataagcagctgagcaaactatggccatttgttgcagatgcagcagagctggtgataaaagagtctgttgaaccactattggaagaatacagacctccaggaatctcatcattgaagtttagcaaactgtctcttggtactgtggcacccaaaattgaaggtattcgtgttcagagtcttaagaaaggtcaaatcacgatggacattgattttcgttggggtggtgatccaaacattgtattaggtgttgaagcacttgttgcttcaattcccattcagttgaaggatcttcaagtttttactgttgttcgcgtaatattccaactttccgaagagatcccttgtatttctgcggttgttgttgccctacttgcagaggctgttggtggaagcttaacagccctccctggaatatcggacatgattgatgatacagtcgagacgattgtcacagacatgctccagtggccgcataggatagttgttccaattggtgggttgcatgttgatacaagtgacttggagcttaaacctcagggaaagatcaccttaacagttgtcagagcgaatgatttaaagaacatggaaatgattggaaaatcagacccttatgttgttgtttacattcgtccaattttcaaggttaagaccaaggttattgacaacaatctgaatcctgtttgggaccaaacatttgagttgattgcagaagacaaggagacacaatcacttgtttttgagattttcgatgaggacattgggcaagacaagcgattgggagtaacaaaattacctttgatcgatctggaagcagaaattcctaaagagatggaactgagattgcagccatctcttaacatgctaaaaataaaagaaaagaaggacagaggaacacttacgattaggatcttgtaccatgaattcaacaaggaagagcagttggctgctttagaggaagagaagaggatctttgaagaacgaaagaaactgaaagctgaaggagttatagggagcacaatggatgcaattgggtccggtgctggaatggtgggttctggtatcggtgctggagttgggcttgtgggaactggtattggtgctggagttgggcttgtgggaactggtgttggtgctggagttgggcttgtgggaacgggtgtcagttctggggctggaatggttggtagtggccttggagctgttggcagtagcctgagcaaagccgggaagttcatgggtaggactatcactgggcaatccagccattcaaggaaaaaaagtggttctacaactccggtgaatagtatccaagaaaatggtggtgcaaagccacggtaa

Protein Analysis

518

Amino Acids

55.85

Weight (kDa)

6.59

Isoelectric Point (pI)

25.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012269)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 364
AccB7I CCANNNNNTGG 1 cut(s) 713
AccII CGCG 1 cut(s) 531
AciI CCGC 2 cut(s) 572, 689
AclWI GGATC 5 cut(s) 440, 513, 550, 1133, 1193
AcoI YGGCCR 3 cut(s) 54, 242, 686
AcsI RAATTY 3 cut(s) 156, 1035, 1139
AcuI CTGAAG 1 cut(s) 1236
AcyI GRCGYC 1 cut(s) 64
AfaI GTAC 4 cut(s) 80, 88, 358, 1133
AfiI CCNNNNNNNGG 1 cut(s) 713
AflII CTTAAG 1 cut(s) 398
AjnI CCWGG 2 cut(s) 316, 625
AluBI AGCT 6 cut(s) 229, 268, 612, 745, 1214, 1418
AluI AGCT 6 cut(s) 229, 268, 612, 745, 1214, 1418
Alw21I GWGCWC 1 cut(s) 1235
Alw26I GTCTC 4 cut(s) 135, 354, 653, 932
AlwI GGATC 5 cut(s) 440, 513, 550, 1133, 1193
AlwNI CAGNNNCTG 1 cut(s) 599
AoxI GGCC 4 cut(s) 54, 242, 686, 1408
ApeKI GCWGC 4 cut(s) 226, 260, 1063, 1163
ApoI RAATTY 3 cut(s) 156, 1035, 1139
ArsI GACNNNNNNTTYG 2 cut(s) 896, 928
Asp700I GAANNNNTTC 1 cut(s) 381
AspS9I GGNCC 2 cut(s) 904, 1251
AsuC2I CCSGG 1 cut(s) 1444
AsuHPI GGTGA 5 cut(s) 220, 283, 455, 757, 1528
AvaII GGWCC 2 cut(s) 904, 1251
AxyI CCTNAGG 1 cut(s) 753
BaeI ACNNNNGTAYC 2 cut(s) 70, 103
BalI TGGCCA 1 cut(s) 244
BanI GGYRCC 1 cut(s) 364
BbsI GAAGAC 1 cut(s) 936
Bbv12I GWGCWC 1 cut(s) 1235
BbvI GCAGC 4 cut(s) 238, 272, 1075, 1150
BccI CCATC 7 cut(s) 19, 25, 46, 67, 412, 1042, 1075
BciT130I CCWGG 2 cut(s) 318, 627
BciVI GTATCC 1 cut(s) 1535
BcnI CCSGG 1 cut(s) 1444
BcoDI GTCTC 4 cut(s) 135, 354, 653, 932
BfrI CTTAAG 1 cut(s) 398
BfuI GTATCC 1 cut(s) 1535
BisI GCNGC 5 cut(s) 227, 261, 689, 1064, 1164
BlpI GCTNAGC 1 cut(s) 230
BlsI GCNGC 5 cut(s) 228, 262, 690, 1065, 1165
Bme1390I CCNGG 3 cut(s) 318, 627, 1444
Bme18I GGWCC 2 cut(s) 904, 1251
BmgT120I GGNCC 2 cut(s) 904, 1251
BmiI GGNNCC 3 cut(s) 366, 905, 1252
BmrFI CCNGG 3 cut(s) 318, 627, 1444
BmrI ACTGGG 1 cut(s) 1479
BmsI GCATC 2 cut(s) 247, 1231
BmuI ACTGGG 1 cut(s) 1479
BoxI GACNNNNGTC 1 cut(s) 665
BpiI GAAGAC 1 cut(s) 936
BpmI CTGGAG 5 cut(s) 300, 665, 1308, 1341, 1374
Bpu10I CCTNAGC 2 cut(s) 102, 1433
Bpu1102I GCTNAGC 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 1444
Bsa29I ATCGAT 1 cut(s) 1020
BsaBI GATNNNNATC 1 cut(s) 1124
BsaHI GRCGYC 1 cut(s) 64
BsaJI CCNNGG 5 cut(s) 124, 625, 870, 1411, 1550
BsaWI WCCGGW 3 cut(s) 81, 1253, 1513
Bsc4I CCNNNNNNNGG 1 cut(s) 713
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 4 cut(s) 682, 1312, 1345, 1474
Bse21I CCTNAGG 1 cut(s) 753
Bse8I GATNNNNATC 1 cut(s) 1124
BseBI CCWGG 2 cut(s) 318, 627
BseCI ATCGAT 1 cut(s) 1020
BseDI CCNNGG 5 cut(s) 124, 625, 870, 1411, 1550
BseGI GGATG 2 cut(s) 36, 1246
BseJI GATNNNNATC 1 cut(s) 1124
BseLI CCNNNNNNNGG 1 cut(s) 713
BseMII CTCAG 5 cut(s) 168, 221, 767, 1046, 1424
BseNI ACTGG 4 cut(s) 682, 1312, 1345, 1474
BseXI GCAGC 4 cut(s) 238, 272, 1075, 1150
Bsh1236I CGCG 1 cut(s) 531
BshFI GGCC 4 cut(s) 56, 244, 688, 1410
BshNI GGYRCC 1 cut(s) 364
BshVI ATCGAT 1 cut(s) 1020
BsiHKAI GWGCWC 1 cut(s) 1235
BsiSI CCGG 5 cut(s) 57, 82, 1254, 1443, 1514
BslFI GGGAC 2 cut(s) 179, 917
BslI CCNNNNNNNGG 1 cut(s) 713
BsmAI GTCTC 4 cut(s) 135, 354, 653, 932
BsmBI CGTCTC 2 cut(s) 135, 653
BsmFI GGGAC 2 cut(s) 179, 917
BsnI GGCC 4 cut(s) 56, 244, 688, 1410
Bsp1286I GDGCHC 1 cut(s) 1235
Bsp143I GATC 8 cut(s) 445, 505, 555, 762, 1017, 1021, 1125, 1185
Bsp1720I GCTNAGC 1 cut(s) 230
BspACI CCGC 2 cut(s) 572, 689
BspANI GGCC 4 cut(s) 56, 244, 688, 1410
BspCNI CTCAG 5 cut(s) 169, 222, 766, 1047, 1425
BspDI ATCGAT 1 cut(s) 1020
BspFNI CGCG 1 cut(s) 531
BspLI GGNNCC 3 cut(s) 366, 905, 1252
BspPI GGATC 5 cut(s) 440, 513, 550, 1133, 1193
BspQI GCTCTTC 1 cut(s) 1146
BspT107I GGYRCC 1 cut(s) 364
BspTI CTTAAG 1 cut(s) 398
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 4 cut(s) 682, 1312, 1345, 1474
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 5 cut(s) 124, 625, 870, 1411, 1550
BssMI GATC 8 cut(s) 445, 505, 555, 762, 1017, 1021, 1125, 1185
BssNI GRCGYC 1 cut(s) 64
BssT1I CCWWGG 3 cut(s) 124, 870, 1411
Bst2UI CCWGG 2 cut(s) 318, 627
Bst4CI ACNGT 6 cut(s) 348, 361, 523, 655, 775, 1554
Bst6I CTCTTC 4 cut(s) 546, 1146, 1170, 1175
BstACI GRCGYC 1 cut(s) 64
BstAFI CTTAAG 1 cut(s) 398
BstAPI GCANNNNNTGC 1 cut(s) 479
BstC8I GCNNGC 2 cut(s) 58, 62
BstDEI CTNAG 6 cut(s) 102, 177, 230, 753, 1055, 1433
BstDSI CCRYGG 1 cut(s) 1550
BstF5I GGATG 2 cut(s) 36, 1246
BstFNI CGCG 1 cut(s) 531
BstKTI GATC 8 cut(s) 448, 508, 558, 765, 1020, 1024, 1128, 1188
BstMAI GTCTC 4 cut(s) 135, 354, 653, 932
BstMBI GATC 8 cut(s) 445, 505, 555, 762, 1017, 1021, 1125, 1185
BstMWI GCNNNNNNNGC 6 cut(s) 53, 260, 479, 590, 685, 988
BstNI CCWGG 2 cut(s) 318, 627
BstNSI RCATGY 3 cut(s) 679, 725, 1081
BstPAI GACNNNNGTC 1 cut(s) 665
BstSCI CCNGG 3 cut(s) 316, 625, 1442
BstUI CGCG 1 cut(s) 531
BstV1I GCAGC 4 cut(s) 238, 272, 1075, 1150
BstV2I GAAGAC 1 cut(s) 936
BstX2I RGATCY 4 cut(s) 505, 555, 1125, 1185
BstXI CCANNNNNNTGG 1 cut(s) 1535
BstYI RGATCY 4 cut(s) 505, 555, 1125, 1185
Bsu15I ATCGAT 1 cut(s) 1020
Bsu36I CCTNAGG 1 cut(s) 753
BsuI GTATCC 1 cut(s) 1535
BsuRI GGCC 4 cut(s) 56, 244, 688, 1410
BsuTUI ATCGAT 1 cut(s) 1020
BtgI CCRYGG 1 cut(s) 1550
BtsCI GGATG 2 cut(s) 36, 1246
BtsIMutI CAGTG 2 cut(s) 689, 1467
Cac8I GCNNGC 2 cut(s) 58, 62
CaiI CAGNNNCTG 1 cut(s) 599
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 2 cut(s) 904, 1251
ClaI ATCGAT 1 cut(s) 1020
CseI GACGC 1 cut(s) 53
Csp6I GTAC 4 cut(s) 79, 87, 357, 1132
CviAII CATG 8 cut(s) 70, 640, 676, 722, 802, 1078, 1136, 1453
CviQI GTAC 4 cut(s) 79, 87, 357, 1132
DdeI CTNAG 6 cut(s) 102, 177, 230, 753, 1055, 1433
DpnI GATC 8 cut(s) 447, 507, 557, 764, 1019, 1023, 1127, 1187
DpnII GATC 8 cut(s) 445, 505, 555, 762, 1017, 1021, 1125, 1185
DraI TTTAAA 1 cut(s) 795
EaeI YGGCCR 3 cut(s) 54, 242, 686
Eam1104I CTCTTC 4 cut(s) 546, 1146, 1170, 1175
EarI CTCTTC 4 cut(s) 546, 1146, 1170, 1175
Eco130I CCWWGG 3 cut(s) 124, 870, 1411
Eco47I GGWCC 2 cut(s) 904, 1251
Eco57I CTGAAG 1 cut(s) 1236
Eco81I CCTNAGG 1 cut(s) 753
EcoRI GAATTC 1 cut(s) 1139
EcoRII CCWGG 2 cut(s) 316, 625
EcoT14I CCWWGG 3 cut(s) 124, 870, 1411
ErhI CCWWGG 3 cut(s) 124, 870, 1411
Esp3I CGTCTC 2 cut(s) 135, 653
FaeI CATG 8 cut(s) 73, 643, 679, 725, 805, 1081, 1139, 1456
FalI AAGNNNNNCTT 4 cut(s) 752, 784, 1172, 1204
FaqI GGGAC 2 cut(s) 179, 917
FatI CATG 8 cut(s) 69, 639, 675, 721, 801, 1077, 1135, 1452
Fnu4HI GCNGC 5 cut(s) 227, 261, 689, 1064, 1164
FokI GGATG 2 cut(s) 43, 1253
Fsp4HI GCNGC 5 cut(s) 227, 261, 689, 1064, 1164
GluI GCNGC 5 cut(s) 227, 261, 689, 1064, 1164
GsuI CTGGAG 5 cut(s) 300, 665, 1308, 1341, 1374
HaeIII GGCC 4 cut(s) 56, 244, 688, 1410
HapII CCGG 5 cut(s) 57, 82, 1254, 1443, 1514
HgaI GACGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 64
Hin1II CATG 8 cut(s) 73, 643, 679, 725, 805, 1081, 1139, 1456
HindIII AAGCTT 1 cut(s) 610
HinfI GANTC 6 cut(s) 19, 96, 281, 321, 394, 892
HpaII CCGG 5 cut(s) 57, 82, 1254, 1443, 1514
HphI GGTGA 5 cut(s) 220, 283, 455, 757, 1528
Hpy166II GTNNAC 1 cut(s) 841
Hpy188I TCNGA 8 cut(s) 24, 41, 393, 550, 637, 782, 823, 891
Hpy188III TCNNGA 4 cut(s) 176, 415, 658, 1025
Hpy8I GTNNAC 1 cut(s) 841
HpyAV CCTTC 4 cut(s) 371, 496, 1093, 1211
HpyCH4III ACNGT 6 cut(s) 348, 361, 523, 655, 775, 1554
HpyCH4V TGCA 8 cut(s) 254, 260, 593, 721, 926, 1063, 1244, 1544
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 260, 479, 590, 685, 988
HpyF3I CTNAG 6 cut(s) 102, 177, 230, 753, 1055, 1433
Hsp92I GRCGYC 1 cut(s) 64
Hsp92II CATG 8 cut(s) 73, 643, 679, 725, 805, 1081, 1139, 1456
KroI GCCGGC 1 cut(s) 56
KroNI GCCGGC 1 cut(s) 58
Kzo9I GATC 8 cut(s) 445, 505, 555, 762, 1017, 1021, 1125, 1185
LguI GCTCTTC 1 cut(s) 1146
LmnI GCTCC 4 cut(s) 684, 742, 1230, 1415
Lsp1109I GCAGC 4 cut(s) 238, 272, 1075, 1150
LweI GCATC 2 cut(s) 247, 1231
MaeIII GTNAC 5 cut(s) 65, 129, 667, 734, 1000
MalI GATC 8 cut(s) 447, 507, 557, 764, 1019, 1023, 1127, 1187
MboI GATC 8 cut(s) 445, 505, 555, 762, 1017, 1021, 1125, 1185
MboII GAAGA 9 cut(s) 163, 314, 500, 563, 941, 1163, 1187, 1192, 1205
MfeI CAATTG 2 cut(s) 708, 1245
MflI RGATCY 4 cut(s) 505, 555, 1125, 1185
MhlI GDGCHC 1 cut(s) 1235
MlsI TGGCCA 1 cut(s) 244
MluNI TGGCCA 1 cut(s) 244
MlyI GAGTC 3 cut(s) 105, 290, 403
MmeI TCCRAC 1 cut(s) 565
MnlI CCTC 8 cut(s) 324, 589, 632, 762, 964, 1100, 1165, 1176
Mox20I TGGCCA 1 cut(s) 244
MroNI GCCGGC 1 cut(s) 56
MroXI GAANNNNTTC 1 cut(s) 381
MscI TGGCCA 1 cut(s) 244
MseI TTAA 7 cut(s) 399, 614, 747, 770, 794, 864, 1074
MslI CAYNNNNRTG 2 cut(s) 674, 806
Msp20I TGGCCA 1 cut(s) 244
MspA1I CMGCKG 1 cut(s) 229
MspCI CTTAAG 1 cut(s) 398
MspI CCGG 5 cut(s) 57, 82, 1254, 1443, 1514
MspR9I CCNGG 3 cut(s) 318, 627, 1444
MunI CAATTG 2 cut(s) 708, 1245
MvaI CCWGG 2 cut(s) 318, 627
MvnI CGCG 1 cut(s) 531
MwoI GCNNNNNNNGC 6 cut(s) 53, 260, 479, 590, 685, 988
NaeI GCCGGC 1 cut(s) 58
NciI CCSGG 1 cut(s) 1444
NdeII GATC 8 cut(s) 445, 505, 555, 762, 1017, 1021, 1125, 1185
NgoMIV GCCGGC 1 cut(s) 56
NlaIII CATG 8 cut(s) 73, 643, 679, 725, 805, 1081, 1139, 1456
NlaIV GGNNCC 3 cut(s) 366, 905, 1252
NmuCI GTSAC 4 cut(s) 65, 129, 667, 734
NspI RCATGY 3 cut(s) 679, 725, 1081
PciSI GCTCTTC 1 cut(s) 1146
PdiI GCCGGC 1 cut(s) 58
PdmI GAANNNNTTC 1 cut(s) 381
PfeI GAWTC 3 cut(s) 19, 321, 892
PflMI CCANNNNNTGG 1 cut(s) 713
PfoI TCCNGGA 1 cut(s) 316
PkrI GCNGC 5 cut(s) 228, 262, 690, 1065, 1165
PleI GAGTC 3 cut(s) 104, 289, 402
PpsI GAGTC 3 cut(s) 104, 289, 402
PshAI GACNNNNGTC 1 cut(s) 665
Psp6I CCWGG 2 cut(s) 316, 625
PspGI CCWGG 2 cut(s) 316, 625
PspN4I GGNNCC 3 cut(s) 366, 905, 1252
PspPI GGNCC 2 cut(s) 904, 1251
PstNI CAGNNNCTG 1 cut(s) 599
PsuI RGATCY 4 cut(s) 505, 555, 1125, 1185
PvuII CAGCTG 1 cut(s) 229
RsaI GTAC 4 cut(s) 80, 88, 358, 1133
RsaNI GTAC 4 cut(s) 79, 87, 357, 1132
RseI CAYNNNNRTG 2 cut(s) 674, 806
SapI GCTCTTC 1 cut(s) 1146
SaqAI TTAA 7 cut(s) 399, 614, 747, 770, 794, 864, 1074
SatI GCNGC 5 cut(s) 227, 261, 689, 1064, 1164
Sau3AI GATC 8 cut(s) 445, 505, 555, 762, 1017, 1021, 1125, 1185
Sau96I GGNCC 2 cut(s) 904, 1251
SchI GAGTC 3 cut(s) 105, 290, 403
ScrFI CCNGG 3 cut(s) 318, 627, 1444
SduI GDGCHC 1 cut(s) 1235
SfaNI GCATC 2 cut(s) 247, 1231
SinI GGWCC 2 cut(s) 904, 1251
SmiMI CAYNNNNRTG 2 cut(s) 674, 806
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
SsiI CCGC 2 cut(s) 572, 689
SspI AATATT 1 cut(s) 537
StyD4I CCNGG 3 cut(s) 316, 625, 1442
StyI CCWWGG 3 cut(s) 124, 870, 1411
TaaI ACNGT 6 cut(s) 348, 361, 523, 655, 775, 1554
TaqI TCGA 3 cut(s) 657, 966, 1020
TauI GCSGC 1 cut(s) 691
TfiI GAWTC 3 cut(s) 19, 321, 892
Tru1I TTAA 7 cut(s) 399, 614, 747, 770, 794, 864, 1074
Tru9I TTAA 7 cut(s) 399, 614, 747, 770, 794, 864, 1074
TscAI CASTG 2 cut(s) 689, 1474
TseFI GTSAC 4 cut(s) 65, 129, 667, 734
TseI GCWGC 4 cut(s) 226, 260, 1063, 1163
Tsp45I GTSAC 4 cut(s) 65, 129, 667, 734
TspDTI ATGAA 2 cut(s) 1152, 1441
TspRI CASTG 2 cut(s) 689, 1474
Van91I CCANNNNNTGG 1 cut(s) 713
Vha464I CTTAAG 1 cut(s) 398
VpaK11BI GGWCC 2 cut(s) 904, 1251
XapI RAATTY 3 cut(s) 156, 1035, 1139
XceI RCATGY 3 cut(s) 679, 725, 1081
XcmI CCANNNNNNNNNTGG 1 cut(s) 1535
XmnI GAANNNNTTC 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.