MD02G1198800.v1.1

Synaptotagmin-like mitochondrial-lipid-binding domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
19519551 .. 19526291
6741 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1198800.v1.1.491

Sequence Viewer

Length: 1611 bp
ATGGGGCTGATTTCGGGGATTCTGATGGGGATGTTGTTCGGAATTGCATTGATGGCCGGATGGCGTCACATGATGAGGTATCGAAGCACCAAACGAGTCGCTAAGGCAGTTGACATAAAGCTCCTTGGATCGCTAAACAGAGATGACTTGAAGAAAATATGCGGGGACAATTTTCCTGAATGGATATCTTTCCCTGTATTTGAACAGGTGAAATGGTTGAATAAGCAATTGAGCAAACTGTGGCCATATGTTGCAGATGCAGCAGAAATCATTATAAAAGATTCTGTTGAACCACTACTGGAAGAATACCGACCTCCAGGAATTACTTCATTGAAGTTCAGCAAACTGTCTCTTGGTACCGTGGCACCCAAAATCGAAGGTATTCGGGTTCAAAGTCTTAAAAAAGGTCAAATTACAATGGACATTGACTTTCGTTGGGGTGGTGATCCAAACATCGTATTAGGTGTTGAAGCTGCACTTGTTGCTTCCATCCCCATTCAGTTGAAGGATCTTCAAGTTTTTACCGTTGTTCGTGTGATTTTCCAACTTGCTGAAGAGATCCCATGTATTTCTGCGGTTGTTGTTGCTCTACTTGCAGAGCCAAAGCCGAGAATTGATTACACTCTGAAGGCTGTTGGTGGAAGCTTAACAGCCCTCCCTGGAATTTCAGATATGATTGATGATACCGTGGAATCCATTGTCACAGACATGCTCCAGTGGCCACACAGGATTGTTGTTCCAATAGGTGGTGTGCCTGTTGATACAAGTGAACTGGAGCTTAAACCTCAAGGAAAGCTCACCTTGACTGTTGTGAAAGCAAATGATCTGAAGAACATGGAAATGATTGGAAAATCGGACCCTTACGTTGTTGTCTACATTCGTCCACTGTTCAAGGTTAAGACCAAGGTTATTGATAACAATCTGAATCCTGTTTGGGACCAAACTTTCGAGTTGATTGCAGAAGACAAGGAGACTCAATCACTTATTCTTGAGGTTTTTGATGAGGACATTGGACAAGACAAGCGATTGGGAGTAACAAAATTACCTTTGATTGAGCTGGAAGCAGAAACTCCTAAAGAGATTGAACTGAGACTGCAGCCATCACTTAACATGCTAAAAATAAAGGAAAAGAAGGATAGAGGAACTATTACAATCAAGGTCTTTTACCATGAATTTAACAAGGAAGAGCAGTTGATTGCTTTGGAAGAAGAGAAGAGGATCCTAGAAGAAAGAAAGAAACTGAAAGAAGCAGGAGTTATCGGCAGCACAATGGATGCACTTGATGGAGCAGCTTCAGTGGTTGGATCCGGTGTTGGAATGGTGGGAAGTGGTGTGACCGCTGGAGCCGGGCTTGTGGGAAGTGGAGTCACTGCTGGAGCCGGGCTTGTGGGAAGTGGCGTTACAGCTGGAGCTGGGCTTGTGGGAACTGGCGTTAATTCTGGAGTTGGAATGGTTGGGAGTGGGCTTGGGGCTGTTGGCAGTGGCCTGAGCAAAGCTGGGAAGTTCATGGGGAGGACTATCACCGGGCAATCCAGCCATTCCAGGAGAAGAAGTGGCTCCACAACTCCAGTGAATAGTGTCCAAGAAAATGGCGGTGCAAAGCCGCGGTAA

Protein Analysis

537

Amino Acids

57.81

Weight (kDa)

7.64

Isoelectric Point (pI)

30.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMP_LBD PF17047 68 - 248 1e-15 Synaptotagmin-like mitochondrial-lipid-binding domain
C2 PF00168 264 - 359 1.8e-23 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012269)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 275
Acc65I GGTACC 1 cut(s) 356
AccB1I GGYRCC 2 cut(s) 356, 364
AccB7I CCANNNNNTGG 1 cut(s) 746
AccI GTMKAC 1 cut(s) 873
AccII CGCG 1 cut(s) 1606
AciI CCGC 6 cut(s) 162, 575, 1338, 1593, 1604, 1606
AclWI GGATC 8 cut(s) 136, 440, 516, 553, 1213, 1226, 1299, 1312
AcoI YGGCCR 3 cut(s) 54, 242, 719
AcsI RAATTY 2 cut(s) 663, 1172
AcuI CTGAAG 4 cut(s) 573, 647, 848, 1278
AcyI GRCGYC 1 cut(s) 64
AfaI GTAC 1 cut(s) 358
AfiI CCNNNNNNNGG 1 cut(s) 746
AjnI CCWGG 3 cut(s) 316, 658, 1541
Alw26I GTCTC 3 cut(s) 354, 965, 1084
AlwI GGATC 8 cut(s) 136, 440, 516, 553, 1213, 1226, 1299, 1312
AoxI GGCC 4 cut(s) 54, 242, 719, 1483
ApeKI GCWGC 5 cut(s) 260, 473, 1096, 1263, 1289
ApoI RAATTY 2 cut(s) 663, 1172
ArsI GACNNNNNNTTYG 2 cut(s) 929, 961
Asp700I GAANNNNTTC 2 cut(s) 325, 381
Asp718I GGTACC 1 cut(s) 356
AspS9I GGNCC 2 cut(s) 856, 937
AsuC2I CCSGG 3 cut(s) 1348, 1381, 1525
AsuHPI GGTGA 4 cut(s) 220, 455, 790, 1513
AvaII GGWCC 2 cut(s) 856, 937
BalI TGGCCA 2 cut(s) 244, 721
BamHI GGATCC 2 cut(s) 1218, 1304
BanI GGYRCC 2 cut(s) 356, 364
BarI GAAGNNNNNNTAC 2 cut(s) 1384, 1416
BbsI GAAGAC 1 cut(s) 969
BbvI GCAGC 5 cut(s) 272, 460, 1108, 1275, 1301
BccI CCATC 6 cut(s) 19, 46, 54, 497, 1108, 1277
BcgI CGANNNNNNTGC 2 cut(s) 938, 972
BciT130I CCWGG 3 cut(s) 318, 660, 1543
BcnI CCSGG 3 cut(s) 1348, 1381, 1525
BcoDI GTCTC 3 cut(s) 354, 965, 1084
BfaI CTAG 1 cut(s) 1223
BfmI CTRYAG 1 cut(s) 1094
BisI GCNGC 6 cut(s) 261, 474, 1097, 1264, 1290, 1604
BlsI GCNGC 6 cut(s) 262, 475, 1098, 1265, 1291, 1605
Bme1390I CCNGG 6 cut(s) 318, 660, 1348, 1381, 1525, 1543
Bme18I GGWCC 2 cut(s) 856, 937
BmgT120I GGNCC 2 cut(s) 856, 937
BmiI GGNNCC 9 cut(s) 358, 366, 858, 938, 1220, 1306, 1345, 1378, 1558
BmrFI CCNGG 6 cut(s) 318, 660, 1348, 1381, 1525, 1543
BmsI GCATC 2 cut(s) 247, 1264
BpiI GAAGAC 1 cut(s) 969
BpmI CTGGAG 8 cut(s) 300, 698, 794, 1362, 1395, 1428, 1461, 1551
Bpu10I CCTNAGC 2 cut(s) 102, 1487
BpuEI CTTGAG 2 cut(s) 771, 1010
BpuMI CCSGG 3 cut(s) 1348, 1381, 1525
BsaBI GATNNNNATC 1 cut(s) 918
BsaHI GRCGYC 1 cut(s) 64
BsaJI CCNNGG 6 cut(s) 124, 360, 658, 687, 903, 1604
BsaWI WCCGGW 1 cut(s) 1307
BsaXI ACNNNNNCTCC 2 cut(s) 1537, 1567
Bsc4I CCNNNNNNNGG 1 cut(s) 746
Bse1I ACTGG 5 cut(s) 303, 715, 777, 1432, 1568
Bse8I GATNNNNATC 1 cut(s) 918
BseBI CCWGG 3 cut(s) 318, 660, 1543
BseDI CCNNGG 6 cut(s) 124, 360, 658, 687, 903, 1604
BseGI GGATG 4 cut(s) 36, 65, 489, 1279
BseJI GATNNNNATC 1 cut(s) 918
BseLI CCNNNNNNNGG 1 cut(s) 746
BseMII CTCAG 2 cut(s) 1079, 1478
BseNI ACTGG 5 cut(s) 303, 715, 777, 1432, 1568
BseXI GCAGC 5 cut(s) 272, 460, 1108, 1275, 1301
BseYI CCCAGC 2 cut(s) 1412, 1496
BsgI GTGCAG 1 cut(s) 459
Bsh1236I CGCG 1 cut(s) 1606
BshFI GGCC 4 cut(s) 56, 244, 721, 1485
BshNI GGYRCC 2 cut(s) 356, 364
BsiSI CCGG 5 cut(s) 57, 1308, 1347, 1380, 1524
BslFI GGGAC 2 cut(s) 179, 950
BslI CCNNNNNNNGG 1 cut(s) 746
BsmAI GTCTC 3 cut(s) 354, 965, 1084
BsmFI GGGAC 2 cut(s) 179, 950
BsnI GGCC 4 cut(s) 56, 244, 721, 1485
Bsp143I GATC 7 cut(s) 128, 445, 508, 558, 823, 1218, 1304
BspACI CCGC 6 cut(s) 162, 575, 1338, 1593, 1604, 1606
BspANI GGCC 4 cut(s) 56, 244, 721, 1485
BspCNI CTCAG 2 cut(s) 1080, 1479
BspFNI CGCG 1 cut(s) 1606
BspLI GGNNCC 9 cut(s) 358, 366, 858, 938, 1220, 1306, 1345, 1378, 1558
BspMAI CTGCAG 1 cut(s) 1098
BspPI GGATC 8 cut(s) 136, 440, 516, 553, 1213, 1226, 1299, 1312
BspQI GCTCTTC 1 cut(s) 1179
BspT107I GGYRCC 2 cut(s) 356, 364
BsrI ACTGG 5 cut(s) 303, 715, 777, 1432, 1568
BssECI CCNNGG 6 cut(s) 124, 360, 658, 687, 903, 1604
BssMI GATC 7 cut(s) 128, 445, 508, 558, 823, 1218, 1304
BssNI GRCGYC 1 cut(s) 64
BssT1I CCWWGG 2 cut(s) 124, 903
Bst2UI CCWGG 3 cut(s) 318, 660, 1543
Bst4CI ACNGT 7 cut(s) 240, 348, 361, 526, 688, 808, 888
Bst6I CTCTTC 4 cut(s) 549, 1179, 1203, 1208
BstACI GRCGYC 1 cut(s) 64
BstAPI GCANNNNNTGC 1 cut(s) 482
BstDEI CTNAG 3 cut(s) 102, 1088, 1487
BstDSI CCRYGG 3 cut(s) 360, 687, 1604
BstF5I GGATG 4 cut(s) 36, 65, 489, 1279
BstFNI CGCG 1 cut(s) 1606
BstKTI GATC 7 cut(s) 131, 448, 511, 561, 826, 1221, 1307
BstMAI GTCTC 3 cut(s) 354, 965, 1084
BstMBI GATC 7 cut(s) 128, 445, 508, 558, 823, 1218, 1304
BstMWI GCNNNNNNNGC 5 cut(s) 53, 260, 482, 593, 718
BstNI CCWGG 3 cut(s) 318, 660, 1543
BstNSI RCATGY 2 cut(s) 712, 1114
BstSCI CCNGG 6 cut(s) 316, 658, 1346, 1379, 1523, 1541
BstSFI CTRYAG 1 cut(s) 1094
BstUI CGCG 1 cut(s) 1606
BstV1I GCAGC 5 cut(s) 272, 460, 1108, 1275, 1301
BstV2I GAAGAC 1 cut(s) 969
BstX2I RGATCY 4 cut(s) 508, 558, 1218, 1304
BstXI CCANNNNNNTGG 1 cut(s) 1589
BstYI RGATCY 4 cut(s) 508, 558, 1218, 1304
BsuRI GGCC 4 cut(s) 56, 244, 721, 1485
BtgI CCRYGG 3 cut(s) 360, 687, 1604
BtsCI GGATG 4 cut(s) 36, 65, 489, 1279
BtsI GCAGTG 2 cut(s) 1368, 1486
BtsIMutI CAGTG 6 cut(s) 722, 884, 1302, 1368, 1486, 1575
Cfr13I GGNCC 2 cut(s) 856, 937
Cfr42I CCGCGG 1 cut(s) 1607
CseI GACGC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 357
CviAII CATG 7 cut(s) 70, 564, 709, 835, 1111, 1169, 1507
CviQI GTAC 1 cut(s) 357
DdeI CTNAG 3 cut(s) 102, 1088, 1487
DpnI GATC 7 cut(s) 130, 447, 510, 560, 825, 1220, 1306
DpnII GATC 7 cut(s) 128, 445, 508, 558, 823, 1218, 1304
EaeI YGGCCR 3 cut(s) 54, 242, 719
Eam1104I CTCTTC 4 cut(s) 549, 1179, 1203, 1208
EarI CTCTTC 4 cut(s) 549, 1179, 1203, 1208
Eco130I CCWWGG 2 cut(s) 124, 903
Eco32I GATATC 1 cut(s) 186
Eco47I GGWCC 2 cut(s) 856, 937
Eco57I CTGAAG 4 cut(s) 573, 647, 848, 1278
EcoRII CCWGG 3 cut(s) 316, 658, 1541
EcoRV GATATC 1 cut(s) 186
EcoT14I CCWWGG 2 cut(s) 124, 903
ErhI CCWWGG 2 cut(s) 124, 903
FaeI CATG 7 cut(s) 73, 567, 712, 838, 1114, 1172, 1510
FalI AAGNNNNNCTT 4 cut(s) 462, 494, 785, 817
FaqI GGGAC 2 cut(s) 179, 950
FatI CATG 7 cut(s) 69, 563, 708, 834, 1110, 1168, 1506
FauI CCCGC 1 cut(s) 155
FauNDI CATATG 1 cut(s) 247
FblI GTMKAC 1 cut(s) 873
Fnu4HI GCNGC 6 cut(s) 261, 474, 1097, 1264, 1290, 1604
FokI GGATG 4 cut(s) 43, 72, 476, 1286
Fsp4HI GCNGC 6 cut(s) 261, 474, 1097, 1264, 1290, 1604
FspBI CTAG 1 cut(s) 1223
GluI GCNGC 6 cut(s) 261, 474, 1097, 1264, 1290, 1604
GsaI CCCAGC 2 cut(s) 1416, 1500
GsuI CTGGAG 8 cut(s) 300, 698, 794, 1362, 1395, 1428, 1461, 1551
HaeIII GGCC 4 cut(s) 56, 244, 721, 1485
HapII CCGG 5 cut(s) 57, 1308, 1347, 1380, 1524
HgaI GACGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 64
Hin1II CATG 7 cut(s) 73, 567, 712, 838, 1114, 1172, 1510
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HindIII AAGCTT 1 cut(s) 643
HinfI GANTC 7 cut(s) 19, 96, 281, 692, 925, 973, 1365
HpaII CCGG 5 cut(s) 57, 1308, 1347, 1380, 1524
HphI GGTGA 4 cut(s) 220, 455, 790, 1513
Hpy166II GTNNAC 4 cut(s) 112, 770, 874, 884
Hpy188I TCNGA 7 cut(s) 24, 41, 627, 670, 828, 856, 924
Hpy188III TCNNGA 3 cut(s) 176, 989, 1440
Hpy8I GTNNAC 4 cut(s) 112, 770, 874, 884
HpyAV CCTTC 4 cut(s) 371, 499, 622, 1126
HpyCH4III ACNGT 7 cut(s) 240, 348, 361, 526, 688, 808, 888
HpyCH4IV ACGT 1 cut(s) 864
HpyCH4V TGCA 9 cut(s) 47, 254, 260, 476, 596, 959, 1096, 1277, 1598
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 260, 482, 593, 718
HpyF3I CTNAG 3 cut(s) 102, 1088, 1487
HpySE526I ACGT 1 cut(s) 864
Hsp92I GRCGYC 1 cut(s) 64
Hsp92II CATG 7 cut(s) 73, 567, 712, 838, 1114, 1172, 1510
KpnI GGTACC 1 cut(s) 360
KspI CCGCGG 1 cut(s) 1607
Kzo9I GATC 7 cut(s) 128, 445, 508, 558, 823, 1218, 1304
LguI GCTCTTC 1 cut(s) 1179
LmnI GCTCC 8 cut(s) 126, 717, 775, 1286, 1343, 1376, 1409, 1562
Lsp1109I GCAGC 5 cut(s) 272, 460, 1108, 1275, 1301
LweI GCATC 2 cut(s) 247, 1264
MaeI CTAG 1 cut(s) 1223
MaeII ACGT 1 cut(s) 864
MaeIII GTNAC 6 cut(s) 65, 700, 1033, 1333, 1366, 1399
MalI GATC 7 cut(s) 130, 447, 510, 560, 825, 1220, 1306
MboI GATC 7 cut(s) 128, 445, 508, 558, 823, 1218, 1304
MfeI CAATTG 1 cut(s) 227
MflI RGATCY 4 cut(s) 508, 558, 1218, 1304
MlsI TGGCCA 2 cut(s) 244, 721
MluNI TGGCCA 2 cut(s) 244, 721
MlyI GAGTC 3 cut(s) 105, 967, 1374
MmeI TCCRAC 4 cut(s) 568, 1282, 1294, 1426
MnlI CCTC 9 cut(s) 69, 324, 665, 795, 985, 997, 1133, 1209, 1506
Mox20I TGGCCA 2 cut(s) 244, 721
MroXI GAANNNNTTC 2 cut(s) 325, 381
MscI TGGCCA 2 cut(s) 244, 721
MseI TTAA 7 cut(s) 399, 647, 780, 897, 1107, 1176, 1434
MslI CAYNNNNRTG 2 cut(s) 707, 839
Msp20I TGGCCA 2 cut(s) 244, 721
MspA1I CMGCKG 3 cut(s) 1340, 1406, 1606
MspI CCGG 5 cut(s) 57, 1308, 1347, 1380, 1524
MspR9I CCNGG 6 cut(s) 318, 660, 1348, 1381, 1525, 1543
MunI CAATTG 1 cut(s) 227
MvaI CCWGG 3 cut(s) 318, 660, 1543
MvnI CGCG 1 cut(s) 1606
MwoI GCNNNNNNNGC 5 cut(s) 53, 260, 482, 593, 718
NciI CCSGG 3 cut(s) 1348, 1381, 1525
NdeI CATATG 1 cut(s) 247
NdeII GATC 7 cut(s) 128, 445, 508, 558, 823, 1218, 1304
NlaIII CATG 7 cut(s) 73, 567, 712, 838, 1114, 1172, 1510
NlaIV GGNNCC 9 cut(s) 358, 366, 858, 938, 1220, 1306, 1345, 1378, 1558
NmeAIII GCCGAG 1 cut(s) 633
NmuCI GTSAC 4 cut(s) 65, 700, 1333, 1366
NspI RCATGY 2 cut(s) 712, 1114
PciSI GCTCTTC 1 cut(s) 1179
PdmI GAANNNNTTC 2 cut(s) 325, 381
PfeI GAWTC 4 cut(s) 19, 281, 692, 925
PflMI CCANNNNNTGG 1 cut(s) 746
PfoI TCCNGGA 2 cut(s) 316, 1541
PkrI GCNGC 6 cut(s) 262, 475, 1098, 1265, 1291, 1605
PleI GAGTC 3 cut(s) 104, 967, 1373
PpsI GAGTC 3 cut(s) 104, 967, 1373
PsiI TTATAA 1 cut(s) 275
Psp6I CCWGG 3 cut(s) 316, 658, 1541
PspFI CCCAGC 2 cut(s) 1412, 1496
PspGI CCWGG 3 cut(s) 316, 658, 1541
PspN4I GGNNCC 9 cut(s) 358, 366, 858, 938, 1220, 1306, 1345, 1378, 1558
PspPI GGNCC 2 cut(s) 856, 937
PstI CTGCAG 1 cut(s) 1098
PsuI RGATCY 4 cut(s) 508, 558, 1218, 1304
PvuII CAGCTG 1 cut(s) 1406
RsaI GTAC 1 cut(s) 358
RsaNI GTAC 1 cut(s) 357
RseI CAYNNNNRTG 2 cut(s) 707, 839
SacII CCGCGG 1 cut(s) 1607
SapI GCTCTTC 1 cut(s) 1179
SaqAI TTAA 7 cut(s) 399, 647, 780, 897, 1107, 1176, 1434
SatI GCNGC 6 cut(s) 261, 474, 1097, 1264, 1290, 1604
Sau3AI GATC 7 cut(s) 128, 445, 508, 558, 823, 1218, 1304
Sau96I GGNCC 2 cut(s) 856, 937
SchI GAGTC 3 cut(s) 105, 967, 1374
ScrFI CCNGG 6 cut(s) 318, 660, 1348, 1381, 1525, 1543
SfaNI GCATC 2 cut(s) 247, 1264
SfcI CTRYAG 1 cut(s) 1094
Sfr303I CCGCGG 1 cut(s) 1607
SgrBI CCGCGG 1 cut(s) 1607
SinI GGWCC 2 cut(s) 856, 937
SmiMI CAYNNNNRTG 2 cut(s) 707, 839
SmlI CTYRAG 2 cut(s) 786, 989
SmoI CTYRAG 2 cut(s) 786, 989
SsiI CCGC 6 cut(s) 162, 575, 1338, 1593, 1604, 1606
SspMI CTAG 1 cut(s) 1223
StyD4I CCNGG 6 cut(s) 316, 658, 1346, 1379, 1523, 1541
StyI CCWWGG 2 cut(s) 124, 903
TaaI ACNGT 7 cut(s) 240, 348, 361, 526, 688, 808, 888
TaiI ACGT 1 cut(s) 867
TaqI TCGA 3 cut(s) 82, 375, 948
TauI GCSGC 1 cut(s) 1606
TfiI GAWTC 4 cut(s) 19, 281, 692, 925
Tru1I TTAA 7 cut(s) 399, 647, 780, 897, 1107, 1176, 1434
Tru9I TTAA 7 cut(s) 399, 647, 780, 897, 1107, 1176, 1434
TscAI CASTG 6 cut(s) 722, 891, 1302, 1375, 1486, 1575
TseFI GTSAC 4 cut(s) 65, 700, 1333, 1366
TseI GCWGC 5 cut(s) 260, 473, 1096, 1263, 1289
Tsp45I GTSAC 4 cut(s) 65, 700, 1333, 1366
TspDTI ATGAA 3 cut(s) 318, 1185, 1495
TspRI CASTG 6 cut(s) 722, 891, 1302, 1375, 1486, 1575
Van91I CCANNNNNTGG 1 cut(s) 746
VpaK11BI GGWCC 2 cut(s) 856, 937
XapI RAATTY 2 cut(s) 663, 1172
XceI RCATGY 2 cut(s) 712, 1114
XmiI GTMKAC 1 cut(s) 873
XmnI GAANNNNTTC 2 cut(s) 325, 381
XspI CTAG 1 cut(s) 1223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.