Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002453

Physical Location & Seq

Genomic Coordinates Reverse (-)

14180775 .. 14182861

Gene Structure 2087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g16533.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGAGGAGAGCGAGAGCGACGGCGAGCACTATAACTCGATGGAGGACGAGCAGTTCGTGTTGTGGTTTCGGAAGGCTTGGCCTTACCTCTGGGCCCACCACGGCGCTACTTTCGTTGTCGTCATCTCCGGTGAAATTGTCAACAACCCTCACCACCTAGACCCTATTCTAAAGGATATTGCCTTTCTTCATCACCTGGGGATCAATTTTGTTCTTGTTCCAGGGACACATTTCGCGACCAGTCAACCACCACCAGTTCCCAACCTCCCTCTCCCGTTCCCGACCACCACCAGTTCCCGACCTCCCTCTTCCTCTCCCGACCACCACCAGTTCGATGTCTTCTGCAACGGTCGGGCAATTGCCTTAAACCACCACCTTGCCTCACCCTCCAAGCCAAGGTCGCACCCTCAAACCACCACCTCCCTTGAGGCAAAGCTCTCGCTCGGACCCTCCATATGCAATATTCGTCGGCATGGTGATAGTAGTCGGTGGCATCAAGTTGGTGTCAGTGTAGCAAGTGGTAACTTTCTTGCAGCCAAGAGGAGAGGAGTCATTGAAGGTGTTGATTATGGGGCAACAGGTGAAGTTAAGAAGGTAGACGTGGTTCGAATGCGTGAGAGGCTTGACAACGGTTGTATTGTGCTTCTGAGCAACCTTGGCTATTCGAGCTCTGGAGAAGTTTTGAATTGCAACACGTATGAAGTTGCAACAGCCTGTTCCTTGGCTATTGGAGTAGATAAGCTTATCTGCATAATCGATTGTCCAATTCTTGATGAGGGTGGACAAGCAGATAAGTTGATTCGTCTGCGGGCATTGCAAAGTGAAATAGCCGCAAACTATGTGAATGCTGTTGATGAAGAAAGTCTCCATGGACGTGATAATGGAAATTTTCTCAAGGAAAAACATATTCCAAAGTTTAACAATGGTGTTGGTTTTGAGAATGGCAATGGATTATGGTCTGGTGAACACGTTTTGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase Acetyltransf_1

Protein Analysis

327

Amino Acids

35.79

Weight (kDa)

6.03

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22910 AT4G37670 AT4G37670
fragaria_vesca	FvH4_1g17820 FvH4_1g17820 FvH4_7g16533
malus_domestica	MD02G1187100.v1.1 MD15G1298200.v1.1
prunus_persica	Prupe.6G219600_v2.0.a1
pyrus_communis	pycom02g15210 pycom15g26090
rosa_chinensis	RchiOBHm_Chr1g0324751 RchiOBHm_Chr1g0384171 RchiOBHm_Chr2g0108261
rosa_laevigata	RLG00000017653 RLG00000026063
rosa_multiflora	Rmu_sc0004559.1_g000001 Rmu_sc0005093.1_g000005 Rmu_sc0005139.1_g000008 Rmu_sc0014419.1_g000007 Rmu_sc0021438.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135370 Rroxscaffold_4G00276880 Rroxscaffold_7G00195850
rosa_rugosa	Rorug01G0445400 Rorug02G0151900
rosa_samantha	Rh1AG470900 Rh1BG428600 Rh1CG441300 Rh1DG461400 Rh2AG200300 Rh2BG213000 Rh2CG205000 Rh2DG207900 Rh4CG151300 Rh6AG253700
rosa_wichuraiana	Rw1G040160 Rw2G015940 Rw2G043840 Rw4G017360 Rw6G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	597
AccII	CGCG	1 cut(s)	236
AciI	CCGC	2 cut(s)	808, 831
AclWI	GGATC	1 cut(s)	209
AcsI	RAATTY	1 cut(s)	886
AfiI	CCNNNNNNNGG	1 cut(s)	396
AflIII	ACRYGT	2 cut(s)	693, 967
AgsI	TTSAA	2 cut(s)	557, 685
AjiI	CACGTC	2 cut(s)	601, 875
AjnI	CCWGG	2 cut(s)	195, 220
AloI	GAACNNNNNNTCC	2 cut(s)	38, 70
AluBI	AGCT	3 cut(s)	436, 669, 742
AluI	AGCT	3 cut(s)	436, 669, 742
Alw21I	GWGCWC	2 cut(s)	30, 671
Alw26I	GTCTC	1 cut(s)	869
AlwI	GGATC	1 cut(s)	209
AoxI	GGCC	2 cut(s)	80, 93
ApaI	GGGCCC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	533
ApoI	RAATTY	1 cut(s)	886
ArsI	GACNNNNNNTTYG	2 cut(s)	38, 70
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	3 cut(s)	93, 94, 446
AsuHPI	GGTGA	7 cut(s)	143, 143, 185, 375, 488, 593, 974
AsuII	TTCGAA	1 cut(s)	607
AvaII	GGWCC	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	97
BanII	GRGCYC	2 cut(s)	97, 671
BbsI	GAAGAC	1 cut(s)	331
Bbv12I	GWGCWC	2 cut(s)	30, 671
BbvI	GCAGC	1 cut(s)	545
BccI	CCATC	1 cut(s)	34
BceAI	ACGGC	2 cut(s)	37, 118
BcgI	CGANNNNNNTGC	2 cut(s)	420, 454
BciT130I	CCWGG	2 cut(s)	197, 222
BcoDI	GTCTC	1 cut(s)	869
BfaI	CTAG	1 cut(s)	158
BfoI	RGCGCY	1 cut(s)	108
BisI	GCNGC	2 cut(s)	534, 831
BlsI	GCNGC	2 cut(s)	535, 832
Bme1390I	CCNGG	2 cut(s)	197, 222
Bme18I	GGWCC	1 cut(s)	446
BmgBI	CACGTC	2 cut(s)	601, 875
BmgT120I	GGNCC	3 cut(s)	93, 94, 446
BmiI	GGNNCC	2 cut(s)	95, 448
BmrFI	CCNGG	2 cut(s)	197, 222
BmsI	GCATC	1 cut(s)	502
BpiI	GAAGAC	1 cut(s)	331
BpmI	CTGGAG	1 cut(s)	693
Bpu14I	TTCGAA	1 cut(s)	607
BpuEI	CTTGAG	2 cut(s)	446, 878
Bsa29I	ATCGAT	1 cut(s)	756
BsaAI	YACGTR	1 cut(s)	696
BsaJI	CCNNGG	7 cut(s)	100, 196, 221, 395, 655, 720, 868
BsaWI	WCCGGW	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
Bse1I	ACTGG	4 cut(s)	240, 254, 291, 328
Bse3DI	GCAATG	2 cut(s)	812, 952
BseBI	CCWGG	2 cut(s)	197, 222
BseCI	ATCGAT	1 cut(s)	756
BseDI	CCNNGG	7 cut(s)	100, 196, 221, 395, 655, 720, 868
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseMI	GCAATG	2 cut(s)	812, 952
BseMII	CTCAG	1 cut(s)	638
BseNI	ACTGG	4 cut(s)	240, 254, 291, 328
BseRI	GAGGAG	3 cut(s)	20, 556, 561
BseSI	GKGCMC	1 cut(s)	97
BseXI	GCAGC	1 cut(s)	545
Bsh1236I	CGCG	1 cut(s)	236
Bsh1285I	CGRYCG	1 cut(s)	352
BshFI	GGCC	2 cut(s)	82, 95
BshVI	ATCGAT	1 cut(s)	756
BsiEI	CGRYCG	1 cut(s)	352
BsiHKAI	GWGCWC	2 cut(s)	30, 671
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	1 cut(s)	396
BsmAI	GTCTC	1 cut(s)	869
BsmFI	GGGAC	1 cut(s)	238
BsmI	GAATGC	2 cut(s)	615, 850
BsnI	GGCC	2 cut(s)	82, 95
Bsp119I	TTCGAA	1 cut(s)	607
Bsp120I	GGGCCC	1 cut(s)	93
Bsp1286I	GDGCHC	3 cut(s)	30, 97, 671
Bsp143I	GATC	1 cut(s)	201
Bsp19I	CCATGG	1 cut(s)	868
Bsp68I	TCGCGA	1 cut(s)	236
BspACI	CCGC	2 cut(s)	808, 831
BspANI	GGCC	2 cut(s)	82, 95
BspCNI	CTCAG	1 cut(s)	639
BspDI	ATCGAT	1 cut(s)	756
BspFNI	CGCG	1 cut(s)	236
BspLI	GGNNCC	2 cut(s)	95, 448
BspPI	GGATC	1 cut(s)	209
BspT104I	TTCGAA	1 cut(s)	607
BsrDI	GCAATG	2 cut(s)	812, 952
BsrI	ACTGG	4 cut(s)	240, 254, 291, 328
BssECI	CCNNGG	7 cut(s)	100, 196, 221, 395, 655, 720, 868
BssMI	GATC	1 cut(s)	201
BssT1I	CCWWGG	4 cut(s)	395, 655, 720, 868
Bst2UI	CCWGG	2 cut(s)	197, 222
Bst4CI	ACNGT	2 cut(s)	350, 632
Bst6I	CTCTTC	1 cut(s)	313
BstBAI	YACGTR	1 cut(s)	696
BstBI	TTCGAA	1 cut(s)	607
BstC8I	GCNNGC	2 cut(s)	26, 810
BstDEI	CTNAG	1 cut(s)	647
BstDSI	CCRYGG	2 cut(s)	100, 868
BstFNI	CGCG	1 cut(s)	236
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	1 cut(s)	204
BstMAI	GTCTC	1 cut(s)	869
BstMBI	GATC	1 cut(s)	201
BstMCI	CGRYCG	1 cut(s)	352
BstMWI	GCNNNNNNNGC	5 cut(s)	400, 619, 657, 666, 814
BstNI	CCWGG	2 cut(s)	197, 222
BstSCI	CCNGG	2 cut(s)	195, 220
BstSLI	GKGCMC	1 cut(s)	97
BstUI	CGCG	1 cut(s)	236
BstV1I	GCAGC	1 cut(s)	545
BstV2I	GAAGAC	1 cut(s)	331
Bsu15I	ATCGAT	1 cut(s)	756
BsuRI	GGCC	2 cut(s)	82, 95
BsuTUI	ATCGAT	1 cut(s)	756
BtgI	CCRYGG	2 cut(s)	100, 868
BtrI	CACGTC	2 cut(s)	601, 875
BtsIMutI	CAGTG	1 cut(s)	514
BtuMI	TCGCGA	1 cut(s)	236
Cac8I	GCNNGC	2 cut(s)	26, 810
CfoI	GCGC	1 cut(s)	107
Cfr13I	GGNCC	3 cut(s)	93, 94, 446
ClaI	ATCGAT	1 cut(s)	756
CspCI	CAANNNNNGTGG	2 cut(s)	406, 441
CviAII	CATG	2 cut(s)	473, 869
DdeI	CTNAG	1 cut(s)	647
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
Ecl136II	GAGCTC	1 cut(s)	669
Eco130I	CCWWGG	4 cut(s)	395, 655, 720, 868
Eco24I	GRGCYC	2 cut(s)	97, 671
Eco47I	GGWCC	1 cut(s)	446
Eco53kI	GAGCTC	1 cut(s)	669
EcoICRI	GAGCTC	1 cut(s)	669
EcoRII	CCWGG	2 cut(s)	195, 220
EcoT14I	CCWWGG	4 cut(s)	395, 655, 720, 868
EcoT38I	GRGCYC	2 cut(s)	97, 671
ErhI	CCWWGG	4 cut(s)	395, 655, 720, 868
FaeI	CATG	2 cut(s)	476, 872
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	2 cut(s)	472, 868
FauI	CCCGC	1 cut(s)	801
FauNDI	CATATG	1 cut(s)	455
FblI	GTMKAC	1 cut(s)	597
Fnu4HI	GCNGC	2 cut(s)	534, 831
FriOI	GRGCYC	2 cut(s)	97, 671
Fsp4HI	GCNGC	2 cut(s)	534, 831
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	2 cut(s)	534, 831
GsuI	CTGGAG	1 cut(s)	693
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	2 cut(s)	82, 95
HapII	CCGG	1 cut(s)	129
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	2 cut(s)	476, 872
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HincII	GTYRAC	2 cut(s)	142, 245
HindII	GTYRAC	2 cut(s)	142, 245
HindIII	AAGCTT	1 cut(s)	740
HinfI	GANTC	2 cut(s)	549, 799
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	7 cut(s)	143, 143, 185, 375, 488, 593, 974
Hpy166II	GTNNAC	5 cut(s)	142, 245, 598, 782, 965
Hpy188I	TCNGA	3 cut(s)	72, 446, 648
Hpy188III	TCNNGA	6 cut(s)	235, 280, 297, 317, 672, 770
Hpy8I	GTNNAC	5 cut(s)	142, 245, 598, 782, 965
Hpy99I	CGWCG	2 cut(s)	23, 471
HpyAV	CCTTC	3 cut(s)	67, 551, 586
HpyCH4III	ACNGT	2 cut(s)	350, 632
HpyCH4IV	ACGT	4 cut(s)	600, 695, 874, 969
HpyCH4V	TGCA	8 cut(s)	345, 459, 533, 690, 707, 750, 817, 976
HpyF10VI	GCNNNNNNNGC	5 cut(s)	400, 619, 657, 666, 814
HpyF3I	CTNAG	1 cut(s)	647
HpySE526I	ACGT	4 cut(s)	600, 695, 874, 969
Hsp92II	CATG	2 cut(s)	476, 872
HspAI	GCGC	1 cut(s)	105
Kzo9I	GATC	1 cut(s)	201
Lsp1109I	GCAGC	1 cut(s)	545
LweI	GCATC	1 cut(s)	502
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	4 cut(s)	600, 695, 874, 969
MaeIII	GTNAC	1 cut(s)	521
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MboII	GAAGA	4 cut(s)	179, 300, 331, 869
MfeI	CAATTG	1 cut(s)	357
MhlI	GDGCHC	3 cut(s)	30, 97, 671
MluCI	AATT	6 cut(s)	135, 205, 357, 685, 765, 886
MlyI	GAGTC	1 cut(s)	558
MseI	TTAA	3 cut(s)	365, 588, 918
MslI	CAYNNNNRTG	1 cut(s)	873
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	2 cut(s)	197, 222
MunI	CAATTG	1 cut(s)	357
Mva1269I	GAATGC	2 cut(s)	615, 850
MvaI	CCWGG	2 cut(s)	197, 222
MvnI	CGCG	1 cut(s)	236
MwoI	GCNNNNNNNGC	5 cut(s)	400, 619, 657, 666, 814
NcoI	CCATGG	1 cut(s)	868
NdeI	CATATG	1 cut(s)	455
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	2 cut(s)	476, 872
NlaIV	GGNNCC	2 cut(s)	95, 448
NruI	TCGCGA	1 cut(s)	236
NspV	TTCGAA	1 cut(s)	607
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PctI	GAATGC	2 cut(s)	615, 850
PfeI	GAWTC	1 cut(s)	799
PkrI	GCNGC	2 cut(s)	535, 832
PleI	GAGTC	1 cut(s)	557
PpsI	GAGTC	1 cut(s)	557
Ppu21I	YACGTR	1 cut(s)	696
Psp124BI	GAGCTC	1 cut(s)	671
Psp6I	CCWGG	2 cut(s)	195, 220
PspGI	CCWGG	2 cut(s)	195, 220
PspN4I	GGNNCC	2 cut(s)	95, 448
PspOMI	GGGCCC	1 cut(s)	93
PspPI	GGNCC	3 cut(s)	93, 94, 446
PsrI	GAACNNNNNNTAC	2 cut(s)	588, 620
RruI	TCGCGA	1 cut(s)	236
RseI	CAYNNNNRTG	1 cut(s)	873
SacI	GAGCTC	1 cut(s)	671
SaqAI	TTAA	3 cut(s)	365, 588, 918
SatI	GCNGC	2 cut(s)	534, 831
Sau3AI	GATC	1 cut(s)	201
Sau96I	GGNCC	3 cut(s)	93, 94, 446
SchI	GAGTC	1 cut(s)	558
ScrFI	CCNGG	2 cut(s)	197, 222
SduI	GDGCHC	3 cut(s)	30, 97, 671
SfaNI	GCATC	1 cut(s)	502
SfuI	TTCGAA	1 cut(s)	607
SinI	GGWCC	1 cut(s)	446
SmiMI	CAYNNNNRTG	1 cut(s)	873
SmlI	CTYRAG	2 cut(s)	425, 893
SmoI	CTYRAG	2 cut(s)	425, 893
Sse9I	AATT	6 cut(s)	135, 205, 357, 685, 765, 886
SsiI	CCGC	2 cut(s)	808, 831
SspI	AATATT	1 cut(s)	463
SspMI	CTAG	1 cut(s)	158
SstI	GAGCTC	1 cut(s)	671
StyD4I	CCNGG	2 cut(s)	195, 220
StyI	CCWWGG	4 cut(s)	395, 655, 720, 868
TaaI	ACNGT	2 cut(s)	350, 632
TaiI	ACGT	4 cut(s)	603, 698, 877, 972
TaqI	TCGA	5 cut(s)	38, 333, 607, 665, 756
TasI	AATT	6 cut(s)	135, 205, 357, 685, 765, 886
TauI	GCSGC	1 cut(s)	833
TfiI	GAWTC	1 cut(s)	799
Tru1I	TTAA	3 cut(s)	365, 588, 918
Tru9I	TTAA	3 cut(s)	365, 588, 918
TscAI	CASTG	1 cut(s)	514
TseI	GCWGC	1 cut(s)	533
TspDTI	ATGAA	3 cut(s)	179, 714, 870
TspRI	CASTG	1 cut(s)	514
VpaK11BI	GGWCC	1 cut(s)	446
XapI	RAATTY	1 cut(s)	886
XmiI	GTMKAC	1 cut(s)	597
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.