Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021438.1

Orthogroup ID

OG0002453

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 759

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021438.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 442 bp

atggccgccaccttcctctccacccacgtcacttccactgccgtccactcgccctcgctccgccgcttttccctcaccgcaaccgctatgccctcccggttggtgatggtaaatagtcggccggcgaagggcagaattggaatgtcgcacaaggccaatgctgctgcgtttgggccggtgatggatgacagcgagagcgacggtgagaactataactcgatggaggatgagctgttcgtgcggtggttcagggaggcttggccgtacctctgggcccaccgcggcgccactttcgtcgtgatcatctccggcgaaattgtgaacagccctcatcacttggaccctattctaaaggatattgcttttcttcatcacctggggatcaagtttgttcttgttccagggatccaggtcgaaatcgatacccttttggctcagagaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase Acetyltransf_1

Protein Analysis

147

Amino Acids

16.34

Weight (kDa)

6.7

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22910 AT4G37670 AT4G37670
fragaria_vesca	FvH4_1g17820 FvH4_1g17820 FvH4_7g16533
malus_domestica	MD02G1187100.v1.1 MD15G1298200.v1.1
prunus_persica	Prupe.6G219600_v2.0.a1
pyrus_communis	pycom02g15210 pycom15g26090
rosa_chinensis	RchiOBHm_Chr1g0324751 RchiOBHm_Chr1g0384171 RchiOBHm_Chr2g0108261
rosa_laevigata	RLG00000017653 RLG00000026063
rosa_multiflora	Rmu_sc0004559.1_g000001 Rmu_sc0005093.1_g000005 Rmu_sc0005139.1_g000008 Rmu_sc0014419.1_g000007 Rmu_sc0021438.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135370 Rroxscaffold_4G00276880 Rroxscaffold_7G00195850
rosa_rugosa	Rorug01G0445400 Rorug02G0151900
rosa_samantha	Rh1AG470900 Rh1BG428600 Rh1CG441300 Rh1DG461400 Rh2AG200300 Rh2BG213000 Rh2CG205000 Rh2DG207900 Rh4CG151300 Rh6AG253700
rosa_wichuraiana	Rw1G040160 Rw2G015940 Rw2G043840 Rw4G017360 Rw6G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	284
AccII	CGCG	1 cut(s)	282
AciI	CCGC	8 cut(s)	6, 61, 64, 78, 84, 241, 280, 282
AclWI	GGATC	3 cut(s)	389, 400, 413
AcoI	YGGCCR	3 cut(s)	3, 119, 260
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	128
AjiI	CACGTC	1 cut(s)	28
AjnI	CCWGG	3 cut(s)	375, 400, 408
AloI	GAACNNNNNNTCC	2 cut(s)	218, 250
AluBI	AGCT	1 cut(s)	232
AluI	AGCT	1 cut(s)	232
AlwI	GGATC	3 cut(s)	389, 400, 413
AoxI	GGCC	6 cut(s)	3, 119, 153, 173, 260, 273
ApaI	GGGCCC	1 cut(s)	277
ApeKI	GCWGC	2 cut(s)	161, 164
AspLEI	GCGC	1 cut(s)	287
AspS9I	GGNCC	4 cut(s)	173, 273, 274, 340
AsuC2I	CCSGG	1 cut(s)	97
AsuHPI	GGTGA	5 cut(s)	67, 115, 190, 215, 365
AvaII	GGWCC	1 cut(s)	340
BaeGI	GKGCMC	1 cut(s)	277
BamHI	GGATCC	1 cut(s)	405
BanI	GGYRCC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	277
BbvI	GCAGC	2 cut(s)	148, 151
BccI	CCATC	3 cut(s)	100, 175, 214
BceAI	ACGGC	2 cut(s)	26, 247
BciT130I	CCWGG	3 cut(s)	377, 402, 410
BclI	TGATCA	1 cut(s)	300
BcnI	CCSGG	1 cut(s)	97
BfoI	RGCGCY	1 cut(s)	288
BisI	GCNGC	5 cut(s)	6, 64, 162, 165, 283
BlsI	GCNGC	5 cut(s)	7, 65, 163, 166, 284
Bme1390I	CCNGG	4 cut(s)	97, 377, 402, 410
Bme18I	GGWCC	1 cut(s)	340
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	4 cut(s)	173, 273, 274, 340
BmiI	GGNNCC	4 cut(s)	275, 286, 342, 407
BmrFI	CCNGG	4 cut(s)	97, 377, 402, 410
BpuMI	CCSGG	1 cut(s)	97
Bsa29I	ATCGAT	1 cut(s)	420
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	3 cut(s)	280, 376, 401
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse118I	RCCGGY	2 cut(s)	121, 175
BseBI	CCWGG	3 cut(s)	377, 402, 410
BseCI	ATCGAT	1 cut(s)	420
BseDI	CCNNGG	3 cut(s)	280, 376, 401
BseGI	GGATG	2 cut(s)	190, 232
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseSI	GKGCMC	1 cut(s)	277
BseX3I	CGGCCG	1 cut(s)	119
BseXI	GCAGC	2 cut(s)	148, 151
Bsh1236I	CGCG	1 cut(s)	282
Bsh1285I	CGRYCG	1 cut(s)	122
BshFI	GGCC	6 cut(s)	5, 121, 155, 175, 262, 275
BshNI	GGYRCC	1 cut(s)	284
BshVI	ATCGAT	1 cut(s)	420
BsiEI	CGRYCG	1 cut(s)	122
BsiSI	CCGG	4 cut(s)	97, 122, 176, 309
BslI	CCNNNNNNNGG	1 cut(s)	128
BsnI	GGCC	6 cut(s)	5, 121, 155, 175, 262, 275
Bsp120I	GGGCCC	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	3 cut(s)	300, 381, 405
BspACI	CCGC	8 cut(s)	6, 61, 64, 78, 84, 241, 280, 282
BspANI	GGCC	6 cut(s)	5, 121, 155, 175, 262, 275
BspDI	ATCGAT	1 cut(s)	420
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	4 cut(s)	275, 286, 342, 407
BspPI	GGATC	3 cut(s)	389, 400, 413
BspT107I	GGYRCC	1 cut(s)	284
BsrFI	RCCGGY	2 cut(s)	121, 175
BssAI	RCCGGY	2 cut(s)	121, 175
BssECI	CCNNGG	3 cut(s)	280, 376, 401
BssMI	GATC	3 cut(s)	300, 381, 405
BssNI	GRCGYC	1 cut(s)	285
Bst2UI	CCWGG	3 cut(s)	377, 402, 410
Bst4CI	ACNGT	1 cut(s)	203
BstACI	GRCGYC	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	435
BstDSI	CCRYGG	1 cut(s)	280
BstF5I	GGATG	2 cut(s)	190, 232
BstFNI	CGCG	1 cut(s)	282
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	3 cut(s)	303, 384, 408
BstMBI	GATC	3 cut(s)	300, 381, 405
BstMCI	CGRYCG	1 cut(s)	122
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 238
BstNI	CCWGG	3 cut(s)	377, 402, 410
BstSCI	CCNGG	4 cut(s)	95, 375, 400, 408
BstSLI	GKGCMC	1 cut(s)	277
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	148, 151
BstX2I	RGATCY	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	405
BstZI	CGGCCG	1 cut(s)	119
Bsu15I	ATCGAT	1 cut(s)	420
BsuRI	GGCC	6 cut(s)	5, 121, 155, 175, 262, 275
BsuTUI	ATCGAT	1 cut(s)	420
BtgI	CCRYGG	1 cut(s)	280
BtrI	CACGTC	1 cut(s)	28
BtsCI	GGATG	2 cut(s)	190, 232
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	123
CfoI	GCGC	1 cut(s)	287
Cfr10I	RCCGGY	2 cut(s)	121, 175
Cfr13I	GGNCC	4 cut(s)	173, 273, 274, 340
Cfr42I	CCGCGG	1 cut(s)	283
ClaI	ATCGAT	1 cut(s)	420
Csp6I	GTAC	1 cut(s)	265
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	1 cut(s)	435
DinI	GGCGCC	1 cut(s)	286
DpnI	GATC	3 cut(s)	302, 383, 407
DpnII	GATC	3 cut(s)	300, 381, 405
EaeI	YGGCCR	3 cut(s)	3, 119, 260
EagI	CGGCCG	1 cut(s)	119
EciI	GGCGGA	1 cut(s)	50
EclXI	CGGCCG	1 cut(s)	119
Eco24I	GRGCYC	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	340
Eco52I	CGGCCG	1 cut(s)	119
EcoRII	CCWGG	3 cut(s)	375, 400, 408
EcoT38I	GRGCYC	1 cut(s)	277
EgeI	GGCGCC	1 cut(s)	286
EheI	GGCGCC	1 cut(s)	286
FaiI	YATR	2 cut(s)	89, 213
FbaI	TGATCA	1 cut(s)	300
Fnu4HI	GCNGC	5 cut(s)	6, 64, 162, 165, 283
FokI	GGATG	2 cut(s)	197, 239
FriOI	GRGCYC	1 cut(s)	277
Fsp4HI	GCNGC	5 cut(s)	6, 64, 162, 165, 283
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	5 cut(s)	6, 64, 162, 165, 283
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	6 cut(s)	5, 121, 155, 175, 262, 275
HapII	CCGG	4 cut(s)	97, 122, 176, 309
HhaI	GCGC	1 cut(s)	287
Hin1I	GRCGYC	1 cut(s)	285
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HpaII	CCGG	4 cut(s)	97, 122, 176, 309
HphI	GGTGA	5 cut(s)	67, 115, 190, 215, 365
Hpy166II	GTNNAC	2 cut(s)	46, 322
Hpy188I	TCNGA	1 cut(s)	438
Hpy188III	TCNNGA	1 cut(s)	298
Hpy8I	GTNNAC	2 cut(s)	46, 322
Hpy99I	CGWCG	2 cut(s)	203, 299
HpyAV	CCTTC	2 cut(s)	22, 121
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	1 cut(s)	27
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 238
HpyF3I	CTNAG	1 cut(s)	435
HpySE526I	ACGT	1 cut(s)	27
Hsp92I	GRCGYC	1 cut(s)	285
HspAI	GCGC	1 cut(s)	285
KasI	GGCGCC	1 cut(s)	284
KroI	GCCGGC	1 cut(s)	121
KroNI	GCCGGC	1 cut(s)	123
Ksp22I	TGATCA	1 cut(s)	300
KspI	CCGCGG	1 cut(s)	283
Kzo9I	GATC	3 cut(s)	300, 381, 405
LmnI	GCTCC	1 cut(s)	63
Lsp1109I	GCAGC	2 cut(s)	148, 151
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	3 cut(s)	302, 383, 407
MboI	GATC	3 cut(s)	300, 381, 405
MboII	GAAGA	1 cut(s)	359
MflI	RGATCY	1 cut(s)	405
MhlI	GDGCHC	1 cut(s)	277
MluCI	AATT	2 cut(s)	135, 315
Mly113I	GGCGCC	1 cut(s)	285
MnlI	CCTC	8 cut(s)	26, 64, 83, 103, 217, 247, 278, 339
MroNI	GCCGGC	1 cut(s)	121
MspA1I	CMGCKG	1 cut(s)	282
MspI	CCGG	4 cut(s)	97, 122, 176, 309
MspR9I	CCNGG	4 cut(s)	97, 377, 402, 410
MvaI	CCWGG	3 cut(s)	377, 402, 410
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	2 cut(s)	161, 238
NaeI	GCCGGC	1 cut(s)	123
NarI	GGCGCC	1 cut(s)	285
NciI	CCSGG	1 cut(s)	97
NdeII	GATC	3 cut(s)	300, 381, 405
NgoMIV	GCCGGC	1 cut(s)	121
NlaIV	GGNNCC	4 cut(s)	275, 286, 342, 407
NmuCI	GTSAC	1 cut(s)	28
PdiI	GCCGGC	1 cut(s)	123
PkrI	GCNGC	5 cut(s)	7, 65, 163, 166, 284
PluTI	GGCGCC	1 cut(s)	288
Psp6I	CCWGG	3 cut(s)	375, 400, 408
PspGI	CCWGG	3 cut(s)	375, 400, 408
PspN4I	GGNNCC	4 cut(s)	275, 286, 342, 407
PspOMI	GGGCCC	1 cut(s)	273
PspPI	GGNCC	4 cut(s)	173, 273, 274, 340
PsuI	RGATCY	1 cut(s)	405
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SacII	CCGCGG	1 cut(s)	283
SatI	GCNGC	5 cut(s)	6, 64, 162, 165, 283
Sau3AI	GATC	3 cut(s)	300, 381, 405
Sau96I	GGNCC	4 cut(s)	173, 273, 274, 340
ScrFI	CCNGG	4 cut(s)	97, 377, 402, 410
SduI	GDGCHC	1 cut(s)	277
SetI	ASST	6 cut(s)	14, 30, 234, 270, 378, 414
SfoI	GGCGCC	1 cut(s)	286
Sfr303I	CCGCGG	1 cut(s)	283
SgrBI	CCGCGG	1 cut(s)	283
SinI	GGWCC	1 cut(s)	340
Sse9I	AATT	2 cut(s)	135, 315
SsiI	CCGC	8 cut(s)	6, 61, 64, 78, 84, 241, 280, 282
SspDI	GGCGCC	1 cut(s)	284
StyD4I	CCNGG	4 cut(s)	95, 375, 400, 408
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	3 cut(s)	218, 414, 420
TasI	AATT	2 cut(s)	135, 315
TauI	GCSGC	3 cut(s)	8, 66, 285
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	2 cut(s)	161, 164
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	359
TspRI	CASTG	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.