Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014419.1

Orthogroup ID

OG0002453

Physical Location & Seq

Genomic Coordinates Forward (+)

22668 .. 26175

Gene Structure 3508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014419.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

atgatgttttatgcttttataaatttcagcacgtatgaagttgcaacggcttgttccttggctattggagcagataagcttatctgcataatggatggtccaattcttgatgagagtggacgtctgattcgtttcttgactcttgaagaagcagacaagttgattcgtcagcgggctaagcaaagtgaaatagctgccagctatgtgaaagctgttgatgaagaaaatctccattatcttggacatgatagtgggaattttcttaaggaaaagcatattccaaggtttaacaatggtgttggttttgagaatggcaatggattgtggtctggtgaacaaggttttgcaatagggggtcacgagcgccaaagtcgattaagcggttacctttcagaattggctgctgcagcctttgtttgcaggggaggtgttcaaagagttcatctgttagatggcactaaagggggagtattgttgttggaattatttaaaagagacggaatggggactatggtggcaagtgacgtttatgaaggaacccggatggctagggtgtcggacctctctggaataagacaaatcatacaacctttagaagcagctggcacattggttacgagaactgacgaagagctacttgaagcattggattcttatgttgttgtcgaaagagaaggtcaaattattgcatgtgctgctctttttcctttccaagaggagaaatgtgcagaggtggctgctattgcagtttctccggattgccgtggacaaggacaaggagataaattgcttgattacatggagaagaaggcatcttctcttggattggaaaagcttttcttgctaacaacccgaactgcagattggtttaagagacgtggattttctgaatgttcaattgaatcaataccagagaagcggagggaaaagattaatctgtcccgtagatccaagtattatatgaagcagcttttacctgatactagcggaattactgttgatagggtgttctcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase Acetyltransf_1

Protein Analysis

338

Amino Acids

37.5

Weight (kDa)

5.72

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22910 AT4G37670 AT4G37670
fragaria_vesca	FvH4_1g17820 FvH4_1g17820 FvH4_7g16533
malus_domestica	MD02G1187100.v1.1 MD15G1298200.v1.1
prunus_persica	Prupe.6G219600_v2.0.a1
pyrus_communis	pycom02g15210 pycom15g26090
rosa_chinensis	RchiOBHm_Chr1g0324751 RchiOBHm_Chr1g0384171 RchiOBHm_Chr2g0108261
rosa_laevigata	RLG00000017653 RLG00000026063
rosa_multiflora	Rmu_sc0004559.1_g000001 Rmu_sc0005093.1_g000005 Rmu_sc0005139.1_g000008 Rmu_sc0014419.1_g000007 Rmu_sc0021438.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135370 Rroxscaffold_4G00276880 Rroxscaffold_7G00195850
rosa_rugosa	Rorug01G0445400 Rorug02G0151900
rosa_samantha	Rh1AG470900 Rh1BG428600 Rh1CG441300 Rh1DG461400 Rh2AG200300 Rh2BG213000 Rh2CG205000 Rh2DG207900 Rh4CG151300 Rh6AG253700
rosa_wichuraiana	Rw1G040160 Rw2G015940 Rw2G043840 Rw4G017360 Rw6G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	20
AatII	GACGTC	1 cut(s)	124
AccIII	TCCGGA	1 cut(s)	754
AciI	CCGC	4 cut(s)	172, 381, 919, 987
AclWI	GGATC	1 cut(s)	942
AcsI	RAATTY	2 cut(s)	22, 256
AcyI	GRCGYC	1 cut(s)	121
AflII	CTTAAG	1 cut(s)	263
AgsI	TTSAA	5 cut(s)	146, 434, 641, 897, 902
AjiI	CACGTC	1 cut(s)	878
AjuI	GAANNNNNNNTTGG	2 cut(s)	847, 879
AluBI	AGCT	8 cut(s)	79, 194, 201, 212, 602, 634, 835, 970
AluI	AGCT	8 cut(s)	79, 194, 201, 212, 602, 634, 835, 970
Alw26I	GTCTC	2 cut(s)	489, 868
AlwI	GGATC	1 cut(s)	942
Aor13HI	TCCGGA	1 cut(s)	754
ApeKI	GCWGC	8 cut(s)	194, 401, 404, 407, 599, 695, 737, 967
ApoI	RAATTY	2 cut(s)	22, 256
ArsI	GACNNNNNNTTYG	2 cut(s)	111, 143
AseI	ATTAAT	1 cut(s)	933
AspLEI	GCGC	1 cut(s)	366
AspS9I	GGNCC	2 cut(s)	98, 559
AsuC2I	CCSGG	1 cut(s)	541
AsuHPI	GGTGA	1 cut(s)	344
AvaII	GGWCC	2 cut(s)	98, 559
BauI	CACGAG	1 cut(s)	359
BbvI	GCAGC	8 cut(s)	181, 388, 391, 419, 611, 682, 724, 979
BccI	CCATC	3 cut(s)	89, 446, 538
BceAI	ACGGC	2 cut(s)	63, 747
BcnI	CCSGG	1 cut(s)	541
BcoDI	GTCTC	2 cut(s)	489, 868
BfaI	CTAG	2 cut(s)	549, 984
BfmI	CTRYAG	2 cut(s)	405, 858
BfoI	RGCGCY	1 cut(s)	367
BfrI	CTTAAG	1 cut(s)	263
BisI	GCNGC	8 cut(s)	195, 402, 405, 408, 600, 696, 738, 968
BlpI	GCTNAGC	1 cut(s)	177
BlsI	GCNGC	8 cut(s)	196, 403, 406, 409, 601, 697, 739, 969
Bme1390I	CCNGG	1 cut(s)	541
Bme18I	GGWCC	2 cut(s)	98, 559
BmgBI	CACGTC	1 cut(s)	878
BmgT120I	GGNCC	2 cut(s)	98, 559
BmiI	GGNNCC	1 cut(s)	538
BmrFI	CCNGG	1 cut(s)	541
BmsI	GCATC	1 cut(s)	821
Bpu1102I	GCTNAGC	1 cut(s)	177
BpuMI	CCSGG	1 cut(s)	541
BsaAI	YACGTR	1 cut(s)	33
BsaHI	GRCGYC	1 cut(s)	121
BsaJI	CCNNGG	3 cut(s)	57, 281, 763
BsaWI	WCCGGW	1 cut(s)	754
Bse3DI	GCAATG	1 cut(s)	322
BseAI	TCCGGA	1 cut(s)	754
BseDI	CCNNGG	3 cut(s)	57, 281, 763
BseGI	GGATG	2 cut(s)	100, 549
BseMI	GCAATG	1 cut(s)	322
BseRI	GAGGAG	1 cut(s)	731
BseXI	GCAGC	8 cut(s)	181, 388, 391, 419, 611, 682, 724, 979
BsgI	GTGCAG	1 cut(s)	747
BsiSI	CCGG	2 cut(s)	541, 755
BslFI	GGGAC	2 cut(s)	520, 925
BsmAI	GTCTC	2 cut(s)	489, 868
BsmBI	CGTCTC	2 cut(s)	489, 868
BsmFI	GGGAC	2 cut(s)	520, 925
Bsp13I	TCCGGA	1 cut(s)	754
Bsp143I	GATC	1 cut(s)	947
Bsp1720I	GCTNAGC	1 cut(s)	177
BspACI	CCGC	4 cut(s)	172, 381, 919, 987
BspEI	TCCGGA	1 cut(s)	754
BspLI	GGNNCC	1 cut(s)	538
BspMAI	CTGCAG	2 cut(s)	409, 862
BspPI	GGATC	1 cut(s)	942
BspQI	GCTCTTC	1 cut(s)	624
BspTI	CTTAAG	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	322
BssECI	CCNNGG	3 cut(s)	57, 281, 763
BssMI	GATC	1 cut(s)	947
BssNI	GRCGYC	1 cut(s)	121
BssSI	CACGAG	1 cut(s)	359
BssT1I	CCWWGG	2 cut(s)	57, 281
Bst2BI	CACGAG	1 cut(s)	359
Bst4CI	ACNGT	1 cut(s)	997
Bst6I	CTCTTC	1 cut(s)	624
BstACI	GRCGYC	1 cut(s)	121
BstAFI	CTTAAG	1 cut(s)	263
BstAPI	GCANNNNNTGC	1 cut(s)	695
BstBAI	YACGTR	1 cut(s)	33
BstC8I	GCNNGC	3 cut(s)	174, 199, 604
BstDEI	CTNAG	1 cut(s)	177
BstDSI	CCRYGG	1 cut(s)	763
BstEII	GGTNACC	1 cut(s)	383
BstF5I	GGATG	2 cut(s)	100, 549
BstH2I	RGCGCY	1 cut(s)	367
BstHHI	GCGC	1 cut(s)	366
BstKTI	GATC	1 cut(s)	950
BstMAI	GTCTC	2 cut(s)	489, 868
BstMBI	GATC	1 cut(s)	947
BstMWI	GCNNNNNNNGC	7 cut(s)	68, 178, 407, 695, 734, 743, 841
BstNSI	RCATGY	1 cut(s)	693
BstPI	GGTNACC	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	539
BstSFI	CTRYAG	2 cut(s)	405, 858
BstV1I	GCAGC	8 cut(s)	181, 388, 391, 419, 611, 682, 724, 979
BstX2I	RGATCY	1 cut(s)	947
BstXI	CCANNNNNNTGG	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	947
BtgI	CCRYGG	1 cut(s)	763
BtrI	CACGTC	1 cut(s)	878
BtsCI	GGATG	2 cut(s)	100, 549
Cac8I	GCNNGC	3 cut(s)	174, 199, 604
CfoI	GCGC	1 cut(s)	366
Cfr13I	GGNCC	2 cut(s)	98, 559
CviAII	CATG	3 cut(s)	245, 690, 799
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	1 cut(s)	949
DpnII	GATC	1 cut(s)	947
DraI	TTTAAA	1 cut(s)	490
Eam1104I	CTCTTC	1 cut(s)	624
EarI	CTCTTC	1 cut(s)	624
Eco130I	CCWWGG	2 cut(s)	57, 281
Eco47I	GGWCC	2 cut(s)	98, 559
Eco91I	GGTNACC	1 cut(s)	383
EcoO65I	GGTNACC	1 cut(s)	383
EcoT14I	CCWWGG	2 cut(s)	57, 281
ErhI	CCWWGG	2 cut(s)	57, 281
Esp3I	CGTCTC	2 cut(s)	489, 868
FaeI	CATG	3 cut(s)	248, 693, 802
FalI	AAGNNNNNCTT	4 cut(s)	621, 653, 824, 856
FaqI	GGGAC	2 cut(s)	520, 925
FatI	CATG	3 cut(s)	244, 689, 798
FauI	CCCGC	1 cut(s)	165
Fnu4HI	GCNGC	8 cut(s)	195, 402, 405, 408, 600, 696, 738, 968
FokI	GGATG	2 cut(s)	107, 556
Fsp4HI	GCNGC	8 cut(s)	195, 402, 405, 408, 600, 696, 738, 968
FspBI	CTAG	2 cut(s)	549, 984
GlaI	GCGC	1 cut(s)	365
GluI	GCNGC	8 cut(s)	195, 402, 405, 408, 600, 696, 738, 968
HaeII	RGCGCY	1 cut(s)	367
HapII	CCGG	2 cut(s)	541, 755
HhaI	GCGC	1 cut(s)	366
Hin1I	GRCGYC	1 cut(s)	121
Hin1II	CATG	3 cut(s)	248, 693, 802
Hin6I	GCGC	1 cut(s)	364
HinP1I	GCGC	1 cut(s)	364
HindIII	AAGCTT	2 cut(s)	77, 833
HinfI	GANTC	5 cut(s)	127, 139, 163, 650, 902
HpaII	CCGG	2 cut(s)	541, 755
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	3 cut(s)	119, 335, 767
Hpy188I	TCNGA	4 cut(s)	126, 394, 559, 889
Hpy188III	TCNNGA	7 cut(s)	107, 136, 143, 359, 567, 755, 1014
Hpy8I	GTNNAC	3 cut(s)	119, 335, 767
HpyAV	CCTTC	3 cut(s)	527, 668, 802
HpyCH4III	ACNGT	1 cut(s)	997
HpyCH4IV	ACGT	4 cut(s)	32, 121, 525, 877
HpyCH4V	TGCA	9 cut(s)	44, 87, 347, 407, 420, 689, 728, 746, 860
HpyF10VI	GCNNNNNNNGC	7 cut(s)	68, 178, 407, 695, 734, 743, 841
HpyF3I	CTNAG	1 cut(s)	177
HpySE526I	ACGT	4 cut(s)	32, 121, 525, 877
Hsp92I	GRCGYC	1 cut(s)	121
Hsp92II	CATG	3 cut(s)	248, 693, 802
HspAI	GCGC	1 cut(s)	364
Kpn2I	TCCGGA	1 cut(s)	754
Kzo9I	GATC	1 cut(s)	947
LguI	GCTCTTC	1 cut(s)	624
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	9 cut(s)	211, 315, 406, 552, 554, 588, 768, 924, 990
Lsp1109I	GCAGC	8 cut(s)	181, 388, 391, 419, 611, 682, 724, 979
LweI	GCATC	1 cut(s)	821
MaeI	CTAG	2 cut(s)	549, 984
MaeII	ACGT	4 cut(s)	32, 121, 525, 877
MaeIII	GTNAC	4 cut(s)	356, 383, 521, 613
MalI	GATC	1 cut(s)	949
MboI	GATC	1 cut(s)	947
MboII	GAAGA	5 cut(s)	158, 233, 641, 807, 817
MfeI	CAATTG	1 cut(s)	897
MflI	RGATCY	1 cut(s)	947
MluCI	AATT	9 cut(s)	22, 102, 256, 395, 482, 681, 785, 897, 990
MlyI	GAGTC	1 cut(s)	133
MmeI	TCCRAC	2 cut(s)	459, 537
MnlI	CCTC	5 cut(s)	419, 572, 709, 724, 915
MroI	TCCGGA	1 cut(s)	754
MseI	TTAA	6 cut(s)	264, 288, 377, 489, 870, 933
MslI	CAYNNNNRTG	1 cut(s)	249
MspA1I	CMGCKG	2 cut(s)	172, 602
MspCI	CTTAAG	1 cut(s)	263
MspI	CCGG	2 cut(s)	541, 755
MspR9I	CCNGG	1 cut(s)	541
MunI	CAATTG	1 cut(s)	897
MwoI	GCNNNNNNNGC	7 cut(s)	68, 178, 407, 695, 734, 743, 841
NciI	CCSGG	1 cut(s)	541
NdeII	GATC	1 cut(s)	947
NlaIII	CATG	3 cut(s)	248, 693, 802
NlaIV	GGNNCC	1 cut(s)	538
NmuCI	GTSAC	2 cut(s)	356, 521
NspI	RCATGY	1 cut(s)	693
PciSI	GCTCTTC	1 cut(s)	624
PcsI	WCGNNNNNNNCGW	1 cut(s)	127
PfeI	GAWTC	4 cut(s)	127, 163, 650, 902
PkrI	GCNGC	8 cut(s)	196, 403, 406, 409, 601, 697, 739, 969
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Ppu21I	YACGTR	1 cut(s)	33
PshBI	ATTAAT	1 cut(s)	933
PsiI	TTATAA	1 cut(s)	20
PspEI	GGTNACC	1 cut(s)	383
PspN4I	GGNNCC	1 cut(s)	538
PspPI	GGNCC	2 cut(s)	98, 559
PstI	CTGCAG	2 cut(s)	409, 862
PsuI	RGATCY	1 cut(s)	947
PvuII	CAGCTG	1 cut(s)	602
RseI	CAYNNNNRTG	1 cut(s)	249
SapI	GCTCTTC	1 cut(s)	624
SaqAI	TTAA	6 cut(s)	264, 288, 377, 489, 870, 933
SatI	GCNGC	8 cut(s)	195, 402, 405, 408, 600, 696, 738, 968
Sau3AI	GATC	1 cut(s)	947
Sau96I	GGNCC	2 cut(s)	98, 559
SchI	GAGTC	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	541
SfaNI	GCATC	1 cut(s)	821
SfcI	CTRYAG	2 cut(s)	405, 858
SinI	GGWCC	2 cut(s)	98, 559
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	9 cut(s)	22, 102, 256, 395, 482, 681, 785, 897, 990
SsiI	CCGC	4 cut(s)	172, 381, 919, 987
SspMI	CTAG	2 cut(s)	549, 984
StyD4I	CCNGG	1 cut(s)	539
StyI	CCWWGG	2 cut(s)	57, 281
TaaI	ACNGT	1 cut(s)	997
TaiI	ACGT	4 cut(s)	35, 124, 528, 880
TaqI	TCGA	2 cut(s)	373, 666
TasI	AATT	9 cut(s)	22, 102, 256, 395, 482, 681, 785, 897, 990
TfiI	GAWTC	4 cut(s)	127, 163, 650, 902
Tru1I	TTAA	6 cut(s)	264, 288, 377, 489, 870, 933
Tru9I	TTAA	6 cut(s)	264, 288, 377, 489, 870, 933
TseFI	GTSAC	2 cut(s)	356, 521
TseI	GCWGC	8 cut(s)	194, 401, 404, 407, 599, 695, 737, 967
Tsp45I	GTSAC	2 cut(s)	356, 521
TspDTI	ATGAA	5 cut(s)	51, 234, 431, 546, 977
TspGWI	ACGGA	1 cut(s)	513
Vha464I	CTTAAG	1 cut(s)	263
VpaK11BI	GGWCC	2 cut(s)	98, 559
VspI	ATTAAT	1 cut(s)	933
XapI	RAATTY	2 cut(s)	22, 256
XceI	RCATGY	1 cut(s)	693
XspI	CTAG	2 cut(s)	549, 984
ZraI	GACGTC	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.