Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0014982

Physical Location & Seq

Genomic Coordinates Forward (+)

14415241 .. 14416536

Gene Structure 1296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g16850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGGATCTGAGGCAGAGCCAGAGTCACCAAAGCTACCCTTGTTCTCTATCTCACACATACAGTCAAATGAGCCTTCTGGGTATCTAACCCCACCCTTCTACAGTTCAGTTTCAGTTCCATTCACATGGGAAGAAGAGCCAGGAAAGCCAAGGCCTTGCACAGACCTTGCAACCATACCAAACCCAGTTGACTTATCCCCAAAGTGCTTGGAACTCCCTCCAAGGCTTTTGCTTGAGACCAAACTGCTCTCACCCACAACAGTGTTGGAGGGTCCTTACGTGGGCAGGTCAAGGTTTCAATCCTCTTCTTTTAGGATTGTGGGGAGGGACTGTTATGGGTCTTTTAGCCCTGATCATGAGAGATCAGGGCAGCTTGGTGCTTTGGTGTTGAGCAAGAATGGGGTTAAGGAAAGAGGGTGGTTTGATTCATGGGGGAGGAGGGTCTTGAAGGGTAAAAGAGAGAATGGTGGGGCTAATTATGTGTTTCCATCATCTGTGGATGGAGAGAGTGATGGTGGTGGTGGTAGTGTTGGAGAGAGTAGCAGCTTCAAGGTGAAGAACACAAGGCATAGAAGGGCTAGGAGCTTTTCCAGTTTGTCTCATTCAAAGCCTCATTTCTGGGCAACTATCTACCAAGGTCTGAAGCAGGTGGTTCCATGGAAGAGTAGGAAATCAAAGCAAGATGGGTTTGCGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF688

Protein Analysis

233

Amino Acids

25.59

Weight (kDa)

9.46

Isoelectric Point (pI)

58.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00950
fragaria_vesca	FvH4_7g16850
malus_domestica	MD01G1083500.v1.1 MD07G1152200.v1.1
prunus_persica	Prupe.2G190500_v2.0.a1
pyrus_communis	pycom07g15030
rosa_chinensis	RchiOBHm_Chr1g0360071
rosa_laevigata	RLG00000027835
rosa_multiflora	Rmu_ssc0000368.1_g000038
rosa_roxburghii	Rroxscaffold_4G00296400
rosa_rugosa	Rorug01G0274700
rosa_samantha	Rh1AG288700 Rh1BG254200 Rh1CG271700 Rh1DG283300
rosa_wichuraiana	Rw1G025600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	637
Acc36I	ACCTGC	2 cut(s)	276, 637
AclWI	GGATC	1 cut(s)	13
AcuI	CTGAAG	1 cut(s)	662
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgsI	TTSAA	4 cut(s)	299, 448, 550, 606
AjnI	CCWGG	1 cut(s)	139
AleI	CACNNNNGTG	1 cut(s)	260
AluBI	AGCT	4 cut(s)	34, 373, 546, 585
AluI	AGCT	4 cut(s)	34, 373, 546, 585
Alw26I	GTCTC	2 cut(s)	230, 603
AlwI	GGATC	1 cut(s)	13
AoxI	GGCC	1 cut(s)	152
ApeKI	GCWGC	2 cut(s)	370, 543
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	3 cut(s)	18, 243, 565
AvaII	GGWCC	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	382, 555
BccI	CCATC	4 cut(s)	494, 496, 506, 677
BciT130I	CCWGG	1 cut(s)	141
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	2 cut(s)	230, 603
BfaI	CTAG	1 cut(s)	579
BfmI	CTRYAG	1 cut(s)	100
BfuAI	ACCTGC	2 cut(s)	276, 637
BisI	GCNGC	2 cut(s)	371, 544
BlsI	GCNGC	2 cut(s)	372, 545
Bme1390I	CCNGG	1 cut(s)	141
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	2 cut(s)	273, 654
BmrFI	CCNGG	1 cut(s)	141
BmrI	ACTGGG	1 cut(s)	179
BmuI	ACTGGG	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	254
BsaAI	YACGTR	1 cut(s)	280
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	4 cut(s)	149, 221, 634, 656
BsaXI	ACNNNNNCTCC	2 cut(s)	316, 346
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse1I	ACTGG	2 cut(s)	185, 591
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	4 cut(s)	149, 221, 634, 656
BseGI	GGATG	1 cut(s)	505
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseNI	ACTGG	2 cut(s)	185, 591
BseRI	GAGGAG	1 cut(s)	451
BseXI	GCAGC	2 cut(s)	382, 555
BshFI	GGCC	1 cut(s)	154
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	2 cut(s)	230, 603
BsmFI	GGGAC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	154
Bso31I	GGTCTC	1 cut(s)	230
Bsp143I	GATC	3 cut(s)	5, 352, 362
Bsp19I	CCATGG	1 cut(s)	656
BspANI	GGCC	1 cut(s)	154
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	2 cut(s)	273, 654
BspMI	ACCTGC	2 cut(s)	276, 637
BspPI	GGATC	1 cut(s)	13
BspQI	GCTCTTC	1 cut(s)	129
BspTNI	GGTCTC	1 cut(s)	230
BsrI	ACTGG	2 cut(s)	185, 591
BssECI	CCNNGG	4 cut(s)	149, 221, 634, 656
BssMI	GATC	3 cut(s)	5, 352, 362
BssT1I	CCWWGG	4 cut(s)	149, 221, 634, 656
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	4 cut(s)	63, 104, 262, 332
Bst6I	CTCTTC	3 cut(s)	129, 310, 656
BstBAI	YACGTR	1 cut(s)	280
BstDEI	CTNAG	1 cut(s)	9
BstDSI	CCRYGG	1 cut(s)	656
BstF5I	GGATG	1 cut(s)	505
BstKTI	GATC	3 cut(s)	8, 355, 365
BstMAI	GTCTC	2 cut(s)	230, 603
BstMBI	GATC	3 cut(s)	5, 352, 362
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	139
BstSFI	CTRYAG	1 cut(s)	100
BstV1I	GCAGC	2 cut(s)	382, 555
BstX2I	RGATCY	1 cut(s)	5
BstXI	CCANNNNNNTGG	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	5
BsuRI	GGCC	1 cut(s)	154
BtgI	CCRYGG	1 cut(s)	656
BtsCI	GGATG	1 cut(s)	505
BtsIMutI	CAGTG	1 cut(s)	267
BveI	ACCTGC	2 cut(s)	276, 637
CciI	TCATGA	1 cut(s)	355
Cfr13I	GGNCC	1 cut(s)	272
CviAII	CATG	4 cut(s)	126, 356, 429, 657
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	3 cut(s)	7, 354, 364
DpnII	GATC	3 cut(s)	5, 352, 362
Eam1104I	CTCTTC	3 cut(s)	129, 310, 656
EarI	CTCTTC	3 cut(s)	129, 310, 656
Eco130I	CCWWGG	4 cut(s)	149, 221, 634, 656
Eco147I	AGGCCT	1 cut(s)	154
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	662
EcoO109I	RGGNCCY	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	139
EcoT14I	CCWWGG	4 cut(s)	149, 221, 634, 656
ErhI	CCWWGG	4 cut(s)	149, 221, 634, 656
FaeI	CATG	4 cut(s)	129, 359, 432, 660
FaiI	YATR	9 cut(s)	59, 127, 176, 336, 357, 430, 480, 570, 658
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	4 cut(s)	125, 355, 428, 656
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	2 cut(s)	371, 544
FokI	GGATG	1 cut(s)	512
Fsp4HI	GCNGC	2 cut(s)	371, 544
FspBI	CTAG	1 cut(s)	579
GluI	GCNGC	2 cut(s)	371, 544
HaeIII	GGCC	1 cut(s)	154
Hin1II	CATG	4 cut(s)	129, 359, 432, 660
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	2 cut(s)	23, 425
HphI	GGTGA	3 cut(s)	18, 243, 565
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	2 cut(s)	10, 642
Hpy188III	TCNNGA	2 cut(s)	356, 445
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	4 cut(s)	84, 106, 442, 567
HpyCH4III	ACNGT	4 cut(s)	63, 104, 262, 332
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	2 cut(s)	159, 170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	1 cut(s)	9
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	4 cut(s)	129, 359, 432, 660
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	5, 352, 362
LguI	GCTCTTC	1 cut(s)	129
LmnI	GCTCC	1 cut(s)	582
Lsp1109I	GCAGC	2 cut(s)	382, 555
MaeI	CTAG	1 cut(s)	579
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	24
MalI	GATC	3 cut(s)	7, 354, 364
MboI	GATC	3 cut(s)	5, 352, 362
MboII	GAAGA	5 cut(s)	143, 146, 297, 568, 673
MflI	RGATCY	1 cut(s)	5
MluCI	AATT	1 cut(s)	475
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	2 cut(s)	246, 511
MnlI	CCTC	9 cut(s)	4, 228, 262, 313, 318, 407, 429, 432, 621
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	2 cut(s)	124, 260
MspR9I	CCNGG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	145
NcoI	CCATGG	1 cut(s)	656
NdeII	GATC	3 cut(s)	5, 352, 362
NlaIII	CATG	4 cut(s)	129, 359, 432, 660
NlaIV	GGNNCC	2 cut(s)	273, 654
NmuCI	GTSAC	1 cut(s)	24
OliI	CACNNNNGTG	1 cut(s)	260
PagI	TCATGA	1 cut(s)	355
PaqCI	CACCTGC	1 cut(s)	637
PceI	AGGCCT	1 cut(s)	154
PciSI	GCTCTTC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	425
PkrI	GCNGC	2 cut(s)	372, 545
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
Ppu21I	YACGTR	1 cut(s)	280
PpuMI	RGGWCCY	1 cut(s)	272
Psp5II	RGGWCCY	1 cut(s)	272
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	273, 654
PspPI	GGNCC	1 cut(s)	272
PspPPI	RGGWCCY	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	5
RseI	CAYNNNNRTG	2 cut(s)	124, 260
SapI	GCTCTTC	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	2 cut(s)	371, 544
Sau3AI	GATC	3 cut(s)	5, 352, 362
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	141
SfcI	CTRYAG	1 cut(s)	100
SinI	GGWCC	1 cut(s)	272
SmiMI	CAYNNNNRTG	2 cut(s)	124, 260
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	1 cut(s)	475
SseBI	AGGCCT	1 cut(s)	154
SspMI	CTAG	1 cut(s)	579
StuI	AGGCCT	1 cut(s)	154
StyD4I	CCNGG	1 cut(s)	139
StyI	CCWWGG	4 cut(s)	149, 221, 634, 656
TaaI	ACNGT	4 cut(s)	63, 104, 262, 332
TaiI	ACGT	1 cut(s)	282
TasI	AATT	1 cut(s)	475
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	24
TseI	GCWGC	2 cut(s)	370, 543
Tsp45I	GTSAC	1 cut(s)	24
TspDTI	ATGAA	1 cut(s)	417
TspRI	CASTG	1 cut(s)	267
VpaK11BI	GGWCC	1 cut(s)	272
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262
XspI	CTAG	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.