Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0014982

Physical Location & Seq

Genomic Coordinates Forward (+)

38418980 .. 38424873

Gene Structure 5894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG254200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGGATCTGAGGCAGAGCCAGAGTCACCAAAGCTACCCTTGTTCTCCATTTCACACATACAGTCAAATGAGCCTTCTGGGTGTCTAACCCCACCCTTCTACAGTTCAGTTTCAGTACCATTCACATGGGAAGAAGAGCCAGGAAAGCCAAGGCCTTGCACAGACCTTGCAACCATACCAAACCCAGTTGACTTATCCCCAAAGTGCTTGGAACTCCCTCCAAGGCTGTTGCTTGAGACCAAATTGCTCTCACCCACCACAGTGTTGGAGGGTCCTTATGTGGGGAGATCAAGGTTTCAGTCCTCTTCTTTTAGGATGGTGGGGAGGGACTGTTATGGGTCTTTTAGCGCTGATCATGAGAGATCAGGGCAGCATGGTGCTTTGGTTATGAGCAAGAGTGGGGTTAAGGAAAGAAGGTGGTTTGATTCATGGGGGAGGAGGGTCTGGAAGGGTAAAAGAGAGGTTGGTGGGGCTAATTATGTCTTTCCATCATCTGTGGATGGAGAGAGTGATAGTGGTGGTGGTGGTGGTGGTGGCAGTGTTGGAAAGAGTAGCAGCTTCAGGGTGAAGAACACAAGGCATAGAAGGGCCAGGAGCTTTTCCAGTCTCTCTCATTCAAGGCCTCAGTTCTGGGCAACTATCAAACAAGGGTTGAAGCAGGTGGTTCCATGGAAGAGTAGGAAATCAAAACAAGATGGGATTGTGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF688

Protein Analysis

236

Amino Acids

25.96

Weight (kDa)

9.81

Isoelectric Point (pI)

70.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00950
fragaria_vesca	FvH4_7g16850
malus_domestica	MD01G1083500.v1.1 MD07G1152200.v1.1
prunus_persica	Prupe.2G190500_v2.0.a1
pyrus_communis	pycom07g15030
rosa_chinensis	RchiOBHm_Chr1g0360071
rosa_laevigata	RLG00000027835
rosa_multiflora	Rmu_ssc0000368.1_g000038
rosa_roxburghii	Rroxscaffold_4G00296400
rosa_rugosa	Rorug01G0274700
rosa_samantha	Rh1AG288700 Rh1BG254200 Rh1CG271700 Rh1DG283300
rosa_wichuraiana	Rw1G025600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	649
Acc36I	ACCTGC	1 cut(s)	649
AclWI	GGATC	1 cut(s)	13
AcuI	CTGAAG	1 cut(s)	544
AfaI	GTAC	1 cut(s)	117
AfeI	AGCGCT	1 cut(s)	349
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgsI	TTSAA	2 cut(s)	618, 655
AjnI	CCWGG	2 cut(s)	139, 590
AleI	CACNNNNGTG	1 cut(s)	260
AluBI	AGCT	3 cut(s)	34, 558, 597
AluI	AGCT	3 cut(s)	34, 558, 597
Alw26I	GTCTC	2 cut(s)	230, 611
AlwI	GGATC	1 cut(s)	13
Aor51HI	AGCGCT	1 cut(s)	349
AoxI	GGCC	3 cut(s)	152, 588, 620
ApeKI	GCWGC	2 cut(s)	370, 555
AspLEI	GCGC	1 cut(s)	350
AspS9I	GGNCC	2 cut(s)	272, 588
AsuHPI	GGTGA	3 cut(s)	18, 243, 577
AvaII	GGWCC	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	382, 567
BccI	CCATC	4 cut(s)	310, 494, 496, 689
BciT130I	CCWGG	2 cut(s)	141, 592
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	2 cut(s)	230, 611
BfmI	CTRYAG	1 cut(s)	100
BfoI	RGCGCY	1 cut(s)	351
BfuAI	ACCTGC	1 cut(s)	649
BisI	GCNGC	2 cut(s)	371, 556
BlsI	GCNGC	2 cut(s)	372, 557
Bme1390I	CCNGG	2 cut(s)	141, 592
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	272, 588
BmiI	GGNNCC	2 cut(s)	273, 666
BmrFI	CCNGG	2 cut(s)	141, 592
BmrI	ACTGGG	1 cut(s)	179
BmuI	ACTGGG	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	254
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	3 cut(s)	149, 221, 668
BsaXI	ACNNNNNCTCC	2 cut(s)	316, 346
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse1I	ACTGG	2 cut(s)	185, 603
BseBI	CCWGG	2 cut(s)	141, 592
BseDI	CCNNGG	3 cut(s)	149, 221, 668
BseGI	GGATG	2 cut(s)	321, 505
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMII	CTCAG	1 cut(s)	638
BseNI	ACTGG	2 cut(s)	185, 603
BseRI	GAGGAG	1 cut(s)	451
BseXI	GCAGC	2 cut(s)	382, 567
BshFI	GGCC	3 cut(s)	154, 590, 622
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	2 cut(s)	230, 611
BsmFI	GGGAC	1 cut(s)	341
BsnI	GGCC	3 cut(s)	154, 590, 622
Bso31I	GGTCTC	1 cut(s)	230
Bsp143I	GATC	4 cut(s)	5, 287, 352, 362
Bsp19I	CCATGG	1 cut(s)	668
BspANI	GGCC	3 cut(s)	154, 590, 622
BspCNI	CTCAG	1 cut(s)	637
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	2 cut(s)	273, 666
BspMI	ACCTGC	1 cut(s)	649
BspPI	GGATC	1 cut(s)	13
BspQI	GCTCTTC	1 cut(s)	129
BspTNI	GGTCTC	1 cut(s)	230
BsrI	ACTGG	2 cut(s)	185, 603
BssECI	CCNNGG	3 cut(s)	149, 221, 668
BssMI	GATC	4 cut(s)	5, 287, 352, 362
BssT1I	CCWWGG	3 cut(s)	149, 221, 668
Bst2UI	CCWGG	2 cut(s)	141, 592
Bst4CI	ACNGT	4 cut(s)	63, 104, 262, 332
Bst6I	CTCTTC	3 cut(s)	129, 310, 668
BstDEI	CTNAG	2 cut(s)	9, 624
BstDSI	CCRYGG	1 cut(s)	668
BstF5I	GGATG	2 cut(s)	321, 505
BstH2I	RGCGCY	1 cut(s)	351
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	4 cut(s)	8, 290, 355, 365
BstMAI	GTCTC	2 cut(s)	230, 611
BstMBI	GATC	4 cut(s)	5, 287, 352, 362
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNI	CCWGG	2 cut(s)	141, 592
BstSCI	CCNGG	2 cut(s)	139, 590
BstSFI	CTRYAG	1 cut(s)	100
BstV1I	GCAGC	2 cut(s)	382, 567
BstX2I	RGATCY	1 cut(s)	5
BstXI	CCANNNNNNTGG	2 cut(s)	126, 265
BstYI	RGATCY	1 cut(s)	5
BsuRI	GGCC	3 cut(s)	154, 590, 622
BtgI	CCRYGG	1 cut(s)	668
BtsCI	GGATG	2 cut(s)	321, 505
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	2 cut(s)	267, 544
BveI	ACCTGC	1 cut(s)	649
CciI	TCATGA	1 cut(s)	355
CfoI	GCGC	1 cut(s)	350
Cfr13I	GGNCC	2 cut(s)	272, 588
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	5 cut(s)	126, 356, 374, 429, 669
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	2 cut(s)	9, 624
DpnI	GATC	4 cut(s)	7, 289, 354, 364
DpnII	GATC	4 cut(s)	5, 287, 352, 362
Eam1104I	CTCTTC	3 cut(s)	129, 310, 668
EarI	CTCTTC	3 cut(s)	129, 310, 668
Eco130I	CCWWGG	3 cut(s)	149, 221, 668
Eco147I	AGGCCT	2 cut(s)	154, 622
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	272
Eco47III	AGCGCT	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	544
EcoO109I	RGGNCCY	1 cut(s)	272
EcoRII	CCWGG	2 cut(s)	139, 590
EcoT14I	CCWWGG	3 cut(s)	149, 221, 668
ErhI	CCWWGG	3 cut(s)	149, 221, 668
FaeI	CATG	5 cut(s)	129, 359, 377, 432, 672
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	5 cut(s)	125, 355, 373, 428, 668
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	2 cut(s)	371, 556
FokI	GGATG	2 cut(s)	328, 512
Fsp4HI	GCNGC	2 cut(s)	371, 556
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	2 cut(s)	371, 556
HaeII	RGCGCY	1 cut(s)	351
HaeIII	GGCC	3 cut(s)	154, 590, 622
HhaI	GCGC	1 cut(s)	350
Hin1II	CATG	5 cut(s)	129, 359, 377, 432, 672
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	2 cut(s)	23, 425
HphI	GGTGA	3 cut(s)	18, 243, 577
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	2 cut(s)	356, 445
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	5 cut(s)	84, 106, 408, 442, 579
HpyCH4III	ACNGT	4 cut(s)	63, 104, 262, 332
HpyCH4V	TGCA	2 cut(s)	159, 170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	2 cut(s)	9, 624
Hsp92II	CATG	5 cut(s)	129, 359, 377, 432, 672
HspAI	GCGC	1 cut(s)	348
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	4 cut(s)	5, 287, 352, 362
LguI	GCTCTTC	1 cut(s)	129
LmnI	GCTCC	1 cut(s)	594
Lsp1109I	GCAGC	2 cut(s)	382, 567
MaeIII	GTNAC	1 cut(s)	24
MalI	GATC	4 cut(s)	7, 289, 354, 364
MboI	GATC	4 cut(s)	5, 287, 352, 362
MboII	GAAGA	5 cut(s)	143, 146, 297, 580, 685
MflI	RGATCY	1 cut(s)	5
MluCI	AATT	2 cut(s)	242, 475
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	2 cut(s)	246, 523
MnlI	CCTC	9 cut(s)	4, 228, 262, 313, 318, 429, 432, 454, 633
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	2 cut(s)	124, 260
MspR9I	CCNGG	2 cut(s)	141, 592
MvaI	CCWGG	2 cut(s)	141, 592
MwoI	GCNNNNNNNGC	1 cut(s)	145
NcoI	CCATGG	1 cut(s)	668
NdeII	GATC	4 cut(s)	5, 287, 352, 362
NlaIII	CATG	5 cut(s)	129, 359, 377, 432, 672
NlaIV	GGNNCC	2 cut(s)	273, 666
NmuCI	GTSAC	1 cut(s)	24
OliI	CACNNNNGTG	1 cut(s)	260
PagI	TCATGA	1 cut(s)	355
PaqCI	CACCTGC	1 cut(s)	649
PceI	AGGCCT	2 cut(s)	154, 622
PciSI	GCTCTTC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	425
PkrI	GCNGC	2 cut(s)	372, 557
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
PpuMI	RGGWCCY	1 cut(s)	272
Psp5II	RGGWCCY	1 cut(s)	272
Psp6I	CCWGG	2 cut(s)	139, 590
PspGI	CCWGG	2 cut(s)	139, 590
PspN4I	GGNNCC	2 cut(s)	273, 666
PspPI	GGNCC	2 cut(s)	272, 588
PspPPI	RGGWCCY	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	5
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
RseI	CAYNNNNRTG	2 cut(s)	124, 260
SapI	GCTCTTC	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	2 cut(s)	371, 556
Sau3AI	GATC	4 cut(s)	5, 287, 352, 362
Sau96I	GGNCC	2 cut(s)	272, 588
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	2 cut(s)	141, 592
SetI	ASST	8 cut(s)	36, 168, 296, 419, 465, 560, 599, 663
SfcI	CTRYAG	1 cut(s)	100
SinI	GGWCC	1 cut(s)	272
SmiMI	CAYNNNNRTG	2 cut(s)	124, 260
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	2 cut(s)	242, 475
SseBI	AGGCCT	2 cut(s)	154, 622
StuI	AGGCCT	2 cut(s)	154, 622
StyD4I	CCNGG	2 cut(s)	139, 590
StyI	CCWWGG	3 cut(s)	149, 221, 668
TaaI	ACNGT	4 cut(s)	63, 104, 262, 332
TasI	AATT	2 cut(s)	242, 475
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	2 cut(s)	267, 544
TseFI	GTSAC	1 cut(s)	24
TseI	GCWGC	2 cut(s)	370, 555
Tsp45I	GTSAC	1 cut(s)	24
TspDTI	ATGAA	1 cut(s)	417
TspRI	CASTG	2 cut(s)	267, 544
VpaK11BI	GGWCC	1 cut(s)	272
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.