Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0014982

Physical Location & Seq

Genomic Coordinates Reverse (-)

15780430 .. 15782095

Gene Structure 1666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027835

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGGATCTGAGGCAGAGCCAGAGTCACCAAAGCTACCCTTGTTCTCCATTTCACACATACAGTCAAATGAGCCTTCTGGGTGTCTAACCCCACCCTTCTACAGTTCAGTTTCAGTACCATTCACATGGGAAGAAGAGCCAGGAAAGCCAAGGCCTTGCACAGACCTTGCAACCATACCAAACCCGGCTGACTTATCCCCAAAGTGCTTGGAACTCCCTCCAAGGCTGTTGCTTGAGACCAAATTGCTCTCACCCACCACAGTGTTGGAGGGTCCTTATGTGGGGAGTTCAAGGTTTCAGTCCTCTTCTTTTAGGATGGTGGGGAGGGACTGTTATGGGTCTTTTAGCGCTGATCATGAGAGATCAGGGCAGCATGGTGCTTTGGTAATGAGCAAGAGTGGGGTTAAGGAAAGAAGGTGGTTTGATTCATGGGGGAGGAGGGTCTTGAAGGGTAAAGGAGAGGTTGGTGGGGCTAATTGTGTCTTTCCATCATCTGTGGATGGAGAGAGTGATGGTGGTGGTGGTGGTGGTGGCAGTGTTGGAAAGAGTAGCAGCTTCAGGGTGAAGAACACAAGGCATAGAAGGGCCAGGAGCTTTTCCAGTCTCTCTCATTCAAGGCCACAGTTCTGGGCAACTATCAAGCAAGGGTTGAAGCAGGTGGTTCCATGGAAAAGTAGGAAATCAAAACAAGATGGGATTGTGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF688

Protein Analysis

236

Amino Acids

25.54

Weight (kDa)

9.58

Isoelectric Point (pI)

65.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00950
fragaria_vesca	FvH4_7g16850
malus_domestica	MD01G1083500.v1.1 MD07G1152200.v1.1
prunus_persica	Prupe.2G190500_v2.0.a1
pyrus_communis	pycom07g15030
rosa_chinensis	RchiOBHm_Chr1g0360071
rosa_laevigata	RLG00000027835
rosa_multiflora	Rmu_ssc0000368.1_g000038
rosa_roxburghii	Rroxscaffold_4G00296400
rosa_rugosa	Rorug01G0274700
rosa_samantha	Rh1AG288700 Rh1BG254200 Rh1CG271700 Rh1DG283300
rosa_wichuraiana	Rw1G025600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	646
Acc36I	ACCTGC	1 cut(s)	646
AclWI	GGATC	1 cut(s)	13
AcuI	CTGAAG	1 cut(s)	541
AfaI	GTAC	1 cut(s)	117
AfeI	AGCGCT	1 cut(s)	349
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgsI	TTSAA	4 cut(s)	291, 448, 615, 652
AjnI	CCWGG	2 cut(s)	139, 587
AleI	CACNNNNGTG	1 cut(s)	260
AluBI	AGCT	3 cut(s)	34, 555, 594
AluI	AGCT	3 cut(s)	34, 555, 594
Alw26I	GTCTC	2 cut(s)	230, 608
AlwI	GGATC	1 cut(s)	13
Aor51HI	AGCGCT	1 cut(s)	349
AoxI	GGCC	3 cut(s)	152, 585, 617
ApeKI	GCWGC	2 cut(s)	370, 552
AspLEI	GCGC	1 cut(s)	350
AspS9I	GGNCC	2 cut(s)	272, 585
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	3 cut(s)	18, 243, 574
AvaII	GGWCC	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	382, 564
BccI	CCATC	5 cut(s)	310, 494, 496, 506, 686
BciT130I	CCWGG	2 cut(s)	141, 589
BclI	TGATCA	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	2 cut(s)	230, 608
BfmI	CTRYAG	1 cut(s)	100
BfoI	RGCGCY	1 cut(s)	351
BfuAI	ACCTGC	1 cut(s)	646
BisI	GCNGC	2 cut(s)	371, 553
BlsI	GCNGC	2 cut(s)	372, 554
Bme1390I	CCNGG	3 cut(s)	141, 185, 589
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	272, 585
BmiI	GGNNCC	2 cut(s)	273, 663
BmrFI	CCNGG	3 cut(s)	141, 185, 589
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	185
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	3 cut(s)	149, 221, 665
BsaXI	ACNNNNNCTCC	2 cut(s)	316, 346
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse1I	ACTGG	1 cut(s)	600
BseBI	CCWGG	2 cut(s)	141, 589
BseDI	CCNNGG	3 cut(s)	149, 221, 665
BseGI	GGATG	2 cut(s)	321, 505
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseNI	ACTGG	1 cut(s)	600
BseRI	GAGGAG	1 cut(s)	451
BseXI	GCAGC	2 cut(s)	382, 564
BshFI	GGCC	3 cut(s)	154, 587, 619
BsiSI	CCGG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	2 cut(s)	230, 608
BsmFI	GGGAC	1 cut(s)	341
BsnI	GGCC	3 cut(s)	154, 587, 619
Bso31I	GGTCTC	1 cut(s)	230
Bsp143I	GATC	3 cut(s)	5, 352, 362
Bsp19I	CCATGG	1 cut(s)	665
BspANI	GGCC	3 cut(s)	154, 587, 619
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	2 cut(s)	273, 663
BspMI	ACCTGC	1 cut(s)	646
BspPI	GGATC	1 cut(s)	13
BspQI	GCTCTTC	1 cut(s)	129
BspTNI	GGTCTC	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	600
BssECI	CCNNGG	3 cut(s)	149, 221, 665
BssMI	GATC	3 cut(s)	5, 352, 362
BssT1I	CCWWGG	3 cut(s)	149, 221, 665
Bst2UI	CCWGG	2 cut(s)	141, 589
Bst4CI	ACNGT	5 cut(s)	63, 104, 262, 332, 624
Bst6I	CTCTTC	2 cut(s)	129, 310
BstDEI	CTNAG	1 cut(s)	9
BstDSI	CCRYGG	1 cut(s)	665
BstF5I	GGATG	2 cut(s)	321, 505
BstH2I	RGCGCY	1 cut(s)	351
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	3 cut(s)	8, 355, 365
BstMAI	GTCTC	2 cut(s)	230, 608
BstMBI	GATC	3 cut(s)	5, 352, 362
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNI	CCWGG	2 cut(s)	141, 589
BstSCI	CCNGG	3 cut(s)	139, 183, 587
BstSFI	CTRYAG	1 cut(s)	100
BstV1I	GCAGC	2 cut(s)	382, 564
BstX2I	RGATCY	1 cut(s)	5
BstXI	CCANNNNNNTGG	3 cut(s)	126, 265, 627
BstYI	RGATCY	1 cut(s)	5
BsuRI	GGCC	3 cut(s)	154, 587, 619
BtgI	CCRYGG	1 cut(s)	665
BtsCI	GGATG	2 cut(s)	321, 505
BtsI	GCAGTG	1 cut(s)	541
BtsIMutI	CAGTG	2 cut(s)	267, 541
BveI	ACCTGC	1 cut(s)	646
CciI	TCATGA	1 cut(s)	355
CfoI	GCGC	1 cut(s)	350
Cfr13I	GGNCC	2 cut(s)	272, 585
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	5 cut(s)	126, 356, 374, 429, 666
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	3 cut(s)	7, 354, 364
DpnII	GATC	3 cut(s)	5, 352, 362
Eam1104I	CTCTTC	2 cut(s)	129, 310
EarI	CTCTTC	2 cut(s)	129, 310
Eco130I	CCWWGG	3 cut(s)	149, 221, 665
Eco147I	AGGCCT	1 cut(s)	154
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	272
Eco47III	AGCGCT	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	541
EcoO109I	RGGNCCY	1 cut(s)	272
EcoRII	CCWGG	2 cut(s)	139, 587
EcoT14I	CCWWGG	3 cut(s)	149, 221, 665
ErhI	CCWWGG	3 cut(s)	149, 221, 665
FaeI	CATG	5 cut(s)	129, 359, 377, 432, 669
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	5 cut(s)	125, 355, 373, 428, 665
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	2 cut(s)	371, 553
FokI	GGATG	2 cut(s)	328, 512
Fsp4HI	GCNGC	2 cut(s)	371, 553
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	2 cut(s)	371, 553
HaeII	RGCGCY	1 cut(s)	351
HaeIII	GGCC	3 cut(s)	154, 587, 619
HapII	CCGG	1 cut(s)	185
HhaI	GCGC	1 cut(s)	350
Hin1II	CATG	5 cut(s)	129, 359, 377, 432, 669
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HinfI	GANTC	2 cut(s)	23, 425
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	3 cut(s)	18, 243, 574
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	2 cut(s)	356, 445
HpyAV	CCTTC	5 cut(s)	84, 106, 408, 442, 576
HpyCH4III	ACNGT	5 cut(s)	63, 104, 262, 332, 624
HpyCH4V	TGCA	2 cut(s)	159, 170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	1 cut(s)	9
Hsp92II	CATG	5 cut(s)	129, 359, 377, 432, 669
HspAI	GCGC	1 cut(s)	348
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	5, 352, 362
LguI	GCTCTTC	1 cut(s)	129
LmnI	GCTCC	1 cut(s)	591
Lsp1109I	GCAGC	2 cut(s)	382, 564
MaeIII	GTNAC	1 cut(s)	24
MalI	GATC	3 cut(s)	7, 354, 364
MboI	GATC	3 cut(s)	5, 352, 362
MboII	GAAGA	4 cut(s)	143, 146, 297, 577
MflI	RGATCY	1 cut(s)	5
MluCI	AATT	2 cut(s)	242, 475
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	2 cut(s)	246, 520
MnlI	CCTC	8 cut(s)	4, 228, 262, 313, 318, 429, 432, 454
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	2 cut(s)	124, 260
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	3 cut(s)	141, 185, 589
MvaI	CCWGG	2 cut(s)	141, 589
MwoI	GCNNNNNNNGC	1 cut(s)	145
NciI	CCSGG	1 cut(s)	185
NcoI	CCATGG	1 cut(s)	665
NdeII	GATC	3 cut(s)	5, 352, 362
NlaIII	CATG	5 cut(s)	129, 359, 377, 432, 669
NlaIV	GGNNCC	2 cut(s)	273, 663
NmuCI	GTSAC	1 cut(s)	24
OliI	CACNNNNGTG	1 cut(s)	260
PagI	TCATGA	1 cut(s)	355
PaqCI	CACCTGC	1 cut(s)	646
PceI	AGGCCT	1 cut(s)	154
PciSI	GCTCTTC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	425
PkrI	GCNGC	2 cut(s)	372, 554
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
PpuMI	RGGWCCY	1 cut(s)	272
Psp5II	RGGWCCY	1 cut(s)	272
Psp6I	CCWGG	2 cut(s)	139, 587
PspGI	CCWGG	2 cut(s)	139, 587
PspN4I	GGNNCC	2 cut(s)	273, 663
PspPI	GGNCC	2 cut(s)	272, 585
PspPPI	RGGWCCY	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	5
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
RseI	CAYNNNNRTG	2 cut(s)	124, 260
SapI	GCTCTTC	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	2 cut(s)	371, 553
Sau3AI	GATC	3 cut(s)	5, 352, 362
Sau96I	GGNCC	2 cut(s)	272, 585
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	3 cut(s)	141, 185, 589
SetI	ASST	8 cut(s)	36, 168, 296, 419, 465, 557, 596, 660
SfcI	CTRYAG	1 cut(s)	100
SinI	GGWCC	1 cut(s)	272
SmiMI	CAYNNNNRTG	2 cut(s)	124, 260
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	2 cut(s)	242, 475
SseBI	AGGCCT	1 cut(s)	154
StuI	AGGCCT	1 cut(s)	154
StyD4I	CCNGG	3 cut(s)	139, 183, 587
StyI	CCWWGG	3 cut(s)	149, 221, 665
TaaI	ACNGT	5 cut(s)	63, 104, 262, 332, 624
TasI	AATT	2 cut(s)	242, 475
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	2 cut(s)	267, 541
TseFI	GTSAC	1 cut(s)	24
TseI	GCWGC	2 cut(s)	370, 552
Tsp45I	GTSAC	1 cut(s)	24
TspDTI	ATGAA	1 cut(s)	417
TspRI	CASTG	2 cut(s)	267, 541
VpaK11BI	GGWCC	1 cut(s)	272
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.