Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0014982

Physical Location & Seq

Genomic Coordinates Forward (+)

22997575 .. 22999776

Gene Structure 2202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G190500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAGATTCAATCACCAAAGATCAGCCACAGAGAGATCGCTAGAGGCCATGGGATCTGAGGCAGAGGTAGAGGAAGAGACACTAAAGCTACCCTTGTTTTCTGCCCCTCAAATTCAGTCACTTGAGCCTTCTGGGAGTTTAACCCCACCACTCTACACCTCAGTTTCAGTTCCATTTCGCTGGGAAGAAGAGCCTGGCAAGCCAAGGCCTTGCACTGCCCTCATCACCCTTCCAAACCCAACTGACTTTTCTCAAAAGTGCTTAGAACTCCCTCCAAGGCTGCTTTTGGAAACCAAACAACCTTCACCCACCACAGTCCTGGAGGGTCCTTATGTGGGCAGGTCAAAGTTTCAGTCTTCTTCATTTAGGATGGGCATGGAGTGTTATGGGGATTTTAGCCCTGAGAGAGGGCAGCTTGGTGCTGTGGTTCTGAGCAAGAGAGGGCTTAAAGAACGAGGGTGGTTTGATTCATGGGGGAGGAGGATCTTGAAGGGTAAAAGAGAGGTTGGTGGGGCTAGTTATGTCTTTCCATCATCTGTGGATGGAGAGAGTGATGGCAGCAGCGTGGGAGAGAGCAGCAGCAGTAGGCAGGTGAAGACCACAAGGATTAGAAGAGCTGGGAGCTTTTCTAGTCCCTCTCATGCCAGACCTCATTTCTGGACAACAATTTGCCAGGGCTTGAAGCAGGCAGTTCCATGGAAGAGTAGAAAATTGAAGAAAGATGGGATTGTGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF688

Protein Analysis

246

Amino Acids

27.19

Weight (kDa)

9.53

Isoelectric Point (pI)

63.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00950
fragaria_vesca	FvH4_7g16850
malus_domestica	MD01G1083500.v1.1 MD07G1152200.v1.1
prunus_persica	Prupe.2G190500_v2.0.a1
pyrus_communis	pycom07g15030
rosa_chinensis	RchiOBHm_Chr1g0360071
rosa_laevigata	RLG00000027835
rosa_multiflora	Rmu_ssc0000368.1_g000038
rosa_roxburghii	Rroxscaffold_4G00296400
rosa_rugosa	Rorug01G0274700
rosa_samantha	Rh1AG288700 Rh1BG254200 Rh1CG271700 Rh1DG283300
rosa_wichuraiana	Rw1G025600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	580
Acc36I	ACCTGC	2 cut(s)	330, 580
AclWI	GGATC	2 cut(s)	61, 491
AcsI	RAATTY	1 cut(s)	111
AfiI	CCNNNNNNNGG	2 cut(s)	335, 407
AgsI	TTSAA	4 cut(s)	10, 490, 682, 715
AjnI	CCWGG	3 cut(s)	193, 318, 672
AjuI	GAANNNNNNNTTGG	2 cut(s)	232, 264
AluBI	AGCT	4 cut(s)	88, 415, 617, 624
AluI	AGCT	4 cut(s)	88, 415, 617, 624
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	2 cut(s)	61, 491
AoxI	GGCC	2 cut(s)	45, 206
ApeKI	GCWGC	6 cut(s)	280, 412, 558, 561, 576, 579
ApoI	RAATTY	1 cut(s)	111
ArsI	GACNNNNNNTTYG	2 cut(s)	338, 370
AspS9I	GGNCC	1 cut(s)	326
AsuHPI	GGTGA	4 cut(s)	5, 217, 297, 604
AvaII	GGWCC	1 cut(s)	326
BbsI	GAAGAC	2 cut(s)	348, 602
BbvI	GCAGC	6 cut(s)	267, 424, 570, 573, 588, 591
BccI	CCATC	5 cut(s)	364, 536, 538, 548, 716
BciT130I	CCWGG	3 cut(s)	195, 320, 674
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	4 cut(s)	41, 516, 630, 736
BfuAI	ACCTGC	2 cut(s)	330, 580
BisI	GCNGC	6 cut(s)	281, 413, 559, 562, 577, 580
BlsI	GCNGC	6 cut(s)	282, 414, 560, 563, 578, 581
Bme1390I	CCNGG	3 cut(s)	195, 320, 674
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	1 cut(s)	327
BmrFI	CCNGG	3 cut(s)	195, 320, 674
BpiI	GAAGAC	2 cut(s)	348, 602
BpmI	CTGGAG	1 cut(s)	341
BpuEI	CTTGAG	1 cut(s)	143
BsaBI	GATNNNNATC	1 cut(s)	731
BsaJI	CCNNGG	5 cut(s)	48, 203, 275, 673, 695
Bsc4I	CCNNNNNNNGG	2 cut(s)	335, 407
Bse8I	GATNNNNATC	1 cut(s)	731
BseBI	CCWGG	3 cut(s)	195, 320, 674
BseDI	CCNNGG	5 cut(s)	48, 203, 275, 673, 695
BseGI	GGATG	2 cut(s)	375, 547
BseJI	GATNNNNATC	1 cut(s)	731
BseLI	CCNNNNNNNGG	2 cut(s)	335, 407
BseMII	CTCAG	4 cut(s)	48, 174, 393, 422
BseRI	GAGGAG	1 cut(s)	493
BseXI	GCAGC	6 cut(s)	267, 424, 570, 573, 588, 591
BseYI	CCCAGC	2 cut(s)	180, 617
BshFI	GGCC	2 cut(s)	47, 208
BslFI	GGGAC	1 cut(s)	618
BslI	CCNNNNNNNGG	2 cut(s)	335, 407
BsmAI	GTCTC	1 cut(s)	71
BsmFI	GGGAC	1 cut(s)	618
BsnI	GGCC	2 cut(s)	47, 208
Bsp143I	GATC	5 cut(s)	20, 35, 53, 483, 732
Bsp19I	CCATGG	2 cut(s)	48, 695
BspANI	GGCC	2 cut(s)	47, 208
BspCNI	CTCAG	4 cut(s)	49, 173, 394, 423
BspLI	GGNNCC	1 cut(s)	327
BspMI	ACCTGC	2 cut(s)	330, 580
BspPI	GGATC	2 cut(s)	61, 491
BspQI	GCTCTTC	2 cut(s)	183, 607
BssECI	CCNNGG	5 cut(s)	48, 203, 275, 673, 695
BssMI	GATC	5 cut(s)	20, 35, 53, 483, 732
BssT1I	CCWWGG	4 cut(s)	48, 203, 275, 695
Bst2UI	CCWGG	3 cut(s)	195, 320, 674
Bst4CI	ACNGT	1 cut(s)	316
Bst6I	CTCTTC	4 cut(s)	69, 183, 607, 695
BstC8I	GCNNGC	2 cut(s)	200, 687
BstDEI	CTNAG	5 cut(s)	57, 160, 262, 402, 431
BstDSI	CCRYGG	2 cut(s)	48, 695
BstENI	CCTNNNNNAGG	1 cut(s)	405
BstF5I	GGATG	2 cut(s)	375, 547
BstKTI	GATC	5 cut(s)	23, 38, 56, 486, 735
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	5 cut(s)	20, 35, 53, 483, 732
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstNI	CCWGG	3 cut(s)	195, 320, 674
BstSCI	CCNGG	3 cut(s)	193, 318, 672
BstV1I	GCAGC	6 cut(s)	267, 424, 570, 573, 588, 591
BstV2I	GAAGAC	2 cut(s)	348, 602
BstX2I	RGATCY	2 cut(s)	53, 483
BstXI	CCANNNNNNTGG	2 cut(s)	180, 319
BstYI	RGATCY	2 cut(s)	53, 483
BsuRI	GGCC	2 cut(s)	47, 208
BtgI	CCRYGG	2 cut(s)	48, 695
BtsCI	GGATG	2 cut(s)	375, 547
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	213
BveI	ACCTGC	2 cut(s)	330, 580
Cac8I	GCNNGC	2 cut(s)	200, 687
Cfr13I	GGNCC	1 cut(s)	326
CviAII	CATG	5 cut(s)	49, 376, 471, 641, 696
DdeI	CTNAG	5 cut(s)	57, 160, 262, 402, 431
DpnI	GATC	5 cut(s)	22, 37, 55, 485, 734
DpnII	GATC	5 cut(s)	20, 35, 53, 483, 732
Eam1104I	CTCTTC	4 cut(s)	69, 183, 607, 695
EarI	CTCTTC	4 cut(s)	69, 183, 607, 695
Eco130I	CCWWGG	4 cut(s)	48, 203, 275, 695
Eco147I	AGGCCT	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	326
EcoNI	CCTNNNNNAGG	1 cut(s)	405
EcoO109I	RGGNCCY	1 cut(s)	326
EcoRII	CCWGG	3 cut(s)	193, 318, 672
EcoT14I	CCWWGG	4 cut(s)	48, 203, 275, 695
ErhI	CCWWGG	4 cut(s)	48, 203, 275, 695
FaeI	CATG	5 cut(s)	52, 379, 474, 644, 699
FaiI	YATR	8 cut(s)	50, 333, 377, 387, 472, 522, 642, 697
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	1 cut(s)	618
FatI	CATG	5 cut(s)	48, 375, 470, 640, 695
Fnu4HI	GCNGC	6 cut(s)	281, 413, 559, 562, 577, 580
FokI	GGATG	2 cut(s)	382, 554
Fsp4HI	GCNGC	6 cut(s)	281, 413, 559, 562, 577, 580
FspBI	CTAG	4 cut(s)	41, 516, 630, 736
GluI	GCNGC	6 cut(s)	281, 413, 559, 562, 577, 580
GsaI	CCCAGC	2 cut(s)	184, 621
GsuI	CTGGAG	1 cut(s)	341
HaeIII	GGCC	2 cut(s)	47, 208
Hin1II	CATG	5 cut(s)	52, 379, 474, 644, 699
HinfI	GANTC	2 cut(s)	6, 467
HphI	GGTGA	4 cut(s)	5, 217, 297, 604
Hpy188I	TCNGA	2 cut(s)	58, 432
Hpy188III	TCNNGA	2 cut(s)	487, 658
HpyAV	CCTTC	4 cut(s)	138, 239, 312, 484
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4V	TGCA	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpyF3I	CTNAG	5 cut(s)	57, 160, 262, 402, 431
Hsp92II	CATG	5 cut(s)	52, 379, 474, 644, 699
Kzo9I	GATC	5 cut(s)	20, 35, 53, 483, 732
LguI	GCTCTTC	2 cut(s)	183, 607
LmnI	GCTCC	1 cut(s)	621
Lsp1109I	GCAGC	6 cut(s)	267, 424, 570, 573, 588, 591
MaeI	CTAG	4 cut(s)	41, 516, 630, 736
MaeIII	GTNAC	1 cut(s)	117
MalI	GATC	5 cut(s)	22, 37, 55, 485, 734
MboI	GATC	5 cut(s)	20, 35, 53, 483, 732
MboII	GAAGA	9 cut(s)	86, 197, 200, 348, 351, 607, 624, 712, 727
MflI	RGATCY	2 cut(s)	53, 483
MluCI	AATT	3 cut(s)	111, 666, 710
MseI	TTAA	2 cut(s)	140, 447
MspR9I	CCNGG	3 cut(s)	195, 320, 674
MvaI	CCWGG	3 cut(s)	195, 320, 674
MwoI	GCNNNNNNNGC	1 cut(s)	199
NcoI	CCATGG	2 cut(s)	48, 695
NdeII	GATC	5 cut(s)	20, 35, 53, 483, 732
NlaIII	CATG	5 cut(s)	52, 379, 474, 644, 699
NlaIV	GGNNCC	1 cut(s)	327
NmuCI	GTSAC	1 cut(s)	117
PaqCI	CACCTGC	1 cut(s)	580
PceI	AGGCCT	1 cut(s)	208
PciSI	GCTCTTC	2 cut(s)	183, 607
PfeI	GAWTC	2 cut(s)	6, 467
PfoI	TCCNGGA	1 cut(s)	318
PkrI	GCNGC	6 cut(s)	282, 414, 560, 563, 578, 581
PpuMI	RGGWCCY	1 cut(s)	326
Psp5II	RGGWCCY	1 cut(s)	326
Psp6I	CCWGG	3 cut(s)	193, 318, 672
PspFI	CCCAGC	2 cut(s)	180, 617
PspGI	CCWGG	3 cut(s)	193, 318, 672
PspN4I	GGNNCC	1 cut(s)	327
PspPI	GGNCC	1 cut(s)	326
PspPPI	RGGWCCY	1 cut(s)	326
PsuI	RGATCY	2 cut(s)	53, 483
SapI	GCTCTTC	2 cut(s)	183, 607
SaqAI	TTAA	2 cut(s)	140, 447
SatI	GCNGC	6 cut(s)	281, 413, 559, 562, 577, 580
Sau3AI	GATC	5 cut(s)	20, 35, 53, 483, 732
Sau96I	GGNCC	1 cut(s)	326
ScrFI	CCNGG	3 cut(s)	195, 320, 674
SinI	GGWCC	1 cut(s)	326
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	3 cut(s)	111, 666, 710
SseBI	AGGCCT	1 cut(s)	208
SspMI	CTAG	4 cut(s)	41, 516, 630, 736
StuI	AGGCCT	1 cut(s)	208
StyD4I	CCNGG	3 cut(s)	193, 318, 672
StyI	CCWWGG	4 cut(s)	48, 203, 275, 695
TaaI	ACNGT	1 cut(s)	316
TasI	AATT	3 cut(s)	111, 666, 710
TfiI	GAWTC	2 cut(s)	6, 467
Tru1I	TTAA	2 cut(s)	140, 447
Tru9I	TTAA	2 cut(s)	140, 447
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	117
TseI	GCWGC	6 cut(s)	280, 412, 558, 561, 576, 579
Tsp45I	GTSAC	1 cut(s)	117
TspDTI	ATGAA	2 cut(s)	351, 459
TspRI	CASTG	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	326
XagI	CCTNNNNNAGG	1 cut(s)	405
XapI	RAATTY	1 cut(s)	111
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XspI	CTAG	4 cut(s)	41, 516, 630, 736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.