Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0014982

Physical Location & Seq

Genomic Coordinates Reverse (-)

16459409 .. 16460604

Gene Structure 1196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00296400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGGATCTGAGGCAGAGCCAGAGTCACCAAAGCTACCCTTGTTCTCCATTACACACATACAGTCAAATGAGCCTTCTGGGTGTCTAACCCCACCCTTCTACAGTTCAGTTTCAGTACCATTCACATGGGAAGAAGAGCCAGGAAAGCCAAGGCCTTGCACAGACCTTGCAACCATACCAAACCCGGCTGACTTATCCCCAAAGTGCTTGGAACTCCCTCCAAGGCTGTTGCTTGAGACCAAATTGCTCTCACCCACCACAGTGTTGGAGGGTCCTTATGTGGGGAGATCAAGGTTTCAGTCCTCTTCTTTTAGGATGGTGGGGAGGGACTGTTATGGGTCTTTTAGCGCTGATCATGAGAGATCAGGGCAGCATGGTGCTGTGGTTATGAGCAAGAGTGGGGTTAAGGAAAGAAGGTGGTTTGATTCATGGGGGAGGAGGGTCTTGAAGGGTAAAAGAGAGGTTGGTGGGGCTAATTGTGTCTTTCCATCATCTGTGGATGGAGAGAGTGATGGTGGTGGTGGTGGTGGCAGTGTTGGAAAGAGTAGCAGCTTCAGGGTGAAGAACACAAGGCATAGAAGGGCCAGGAGCTTTTCCAGTCTCTCTCATTCAAGGCCTCAGTTCTGGGCTACTATCAAACAAGGGTTGAAGCAGGTGGTTCCATGGAAGAGTAGGAAATCAAAACAAGATGGGATTGTGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF688

Protein Analysis

234

Amino Acids

25.65

Weight (kDa)

9.77

Isoelectric Point (pI)

68.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00950
fragaria_vesca	FvH4_7g16850
malus_domestica	MD01G1083500.v1.1 MD07G1152200.v1.1
prunus_persica	Prupe.2G190500_v2.0.a1
pyrus_communis	pycom07g15030
rosa_chinensis	RchiOBHm_Chr1g0360071
rosa_laevigata	RLG00000027835
rosa_multiflora	Rmu_ssc0000368.1_g000038
rosa_roxburghii	Rroxscaffold_4G00296400
rosa_rugosa	Rorug01G0274700
rosa_samantha	Rh1AG288700 Rh1BG254200 Rh1CG271700 Rh1DG283300
rosa_wichuraiana	Rw1G025600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	643
Acc36I	ACCTGC	1 cut(s)	643
AclWI	GGATC	1 cut(s)	13
AcuI	CTGAAG	1 cut(s)	538
AfaI	GTAC	1 cut(s)	117
AfeI	AGCGCT	1 cut(s)	349
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgsI	TTSAA	3 cut(s)	448, 612, 649
AjnI	CCWGG	2 cut(s)	139, 584
AleI	CACNNNNGTG	1 cut(s)	260
AluBI	AGCT	3 cut(s)	34, 552, 591
AluI	AGCT	3 cut(s)	34, 552, 591
Alw26I	GTCTC	2 cut(s)	230, 605
AlwI	GGATC	1 cut(s)	13
Aor51HI	AGCGCT	1 cut(s)	349
AoxI	GGCC	3 cut(s)	152, 582, 614
ApeKI	GCWGC	2 cut(s)	370, 549
AspLEI	GCGC	1 cut(s)	350
AspS9I	GGNCC	2 cut(s)	272, 582
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	3 cut(s)	18, 243, 571
AvaII	GGWCC	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	382, 561
BccI	CCATC	5 cut(s)	310, 494, 496, 506, 683
BciT130I	CCWGG	2 cut(s)	141, 586
BclI	TGATCA	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	2 cut(s)	230, 605
BfmI	CTRYAG	1 cut(s)	100
BfoI	RGCGCY	1 cut(s)	351
BfuAI	ACCTGC	1 cut(s)	643
BisI	GCNGC	2 cut(s)	371, 550
BlsI	GCNGC	2 cut(s)	372, 551
Bme1390I	CCNGG	3 cut(s)	141, 185, 586
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	272, 582
BmiI	GGNNCC	2 cut(s)	273, 660
BmrFI	CCNGG	3 cut(s)	141, 185, 586
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	185
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	3 cut(s)	149, 221, 662
BsaXI	ACNNNNNCTCC	2 cut(s)	316, 346
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse1I	ACTGG	1 cut(s)	597
BseBI	CCWGG	2 cut(s)	141, 586
BseDI	CCNNGG	3 cut(s)	149, 221, 662
BseGI	GGATG	2 cut(s)	321, 505
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMII	CTCAG	1 cut(s)	632
BseNI	ACTGG	1 cut(s)	597
BseRI	GAGGAG	1 cut(s)	451
BseXI	GCAGC	2 cut(s)	382, 561
BshFI	GGCC	3 cut(s)	154, 584, 616
BsiSI	CCGG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	2 cut(s)	230, 605
BsmFI	GGGAC	1 cut(s)	341
BsnI	GGCC	3 cut(s)	154, 584, 616
Bso31I	GGTCTC	1 cut(s)	230
Bsp143I	GATC	4 cut(s)	5, 287, 352, 362
Bsp19I	CCATGG	1 cut(s)	662
BspANI	GGCC	3 cut(s)	154, 584, 616
BspCNI	CTCAG	1 cut(s)	631
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	2 cut(s)	273, 660
BspMI	ACCTGC	1 cut(s)	643
BspPI	GGATC	1 cut(s)	13
BspQI	GCTCTTC	1 cut(s)	129
BspTNI	GGTCTC	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	597
BssECI	CCNNGG	3 cut(s)	149, 221, 662
BssMI	GATC	4 cut(s)	5, 287, 352, 362
BssT1I	CCWWGG	3 cut(s)	149, 221, 662
Bst2UI	CCWGG	2 cut(s)	141, 586
Bst4CI	ACNGT	4 cut(s)	63, 104, 262, 332
Bst6I	CTCTTC	3 cut(s)	129, 310, 662
BstDEI	CTNAG	2 cut(s)	9, 618
BstDSI	CCRYGG	1 cut(s)	662
BstF5I	GGATG	2 cut(s)	321, 505
BstH2I	RGCGCY	1 cut(s)	351
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	4 cut(s)	8, 290, 355, 365
BstMAI	GTCTC	2 cut(s)	230, 605
BstMBI	GATC	4 cut(s)	5, 287, 352, 362
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNI	CCWGG	2 cut(s)	141, 586
BstSCI	CCNGG	3 cut(s)	139, 183, 584
BstSFI	CTRYAG	1 cut(s)	100
BstV1I	GCAGC	2 cut(s)	382, 561
BstX2I	RGATCY	1 cut(s)	5
BstXI	CCANNNNNNTGG	2 cut(s)	126, 265
BstYI	RGATCY	1 cut(s)	5
BsuRI	GGCC	3 cut(s)	154, 584, 616
BtgI	CCRYGG	1 cut(s)	662
BtsCI	GGATG	2 cut(s)	321, 505
BtsI	GCAGTG	1 cut(s)	538
BtsIMutI	CAGTG	2 cut(s)	267, 538
BveI	ACCTGC	1 cut(s)	643
CciI	TCATGA	1 cut(s)	355
CfoI	GCGC	1 cut(s)	350
Cfr13I	GGNCC	2 cut(s)	272, 582
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	5 cut(s)	126, 356, 374, 429, 663
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	2 cut(s)	9, 618
DpnI	GATC	4 cut(s)	7, 289, 354, 364
DpnII	GATC	4 cut(s)	5, 287, 352, 362
Eam1104I	CTCTTC	3 cut(s)	129, 310, 662
EarI	CTCTTC	3 cut(s)	129, 310, 662
Eco130I	CCWWGG	3 cut(s)	149, 221, 662
Eco147I	AGGCCT	2 cut(s)	154, 616
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	272
Eco47III	AGCGCT	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	538
EcoO109I	RGGNCCY	1 cut(s)	272
EcoRII	CCWGG	2 cut(s)	139, 584
EcoT14I	CCWWGG	3 cut(s)	149, 221, 662
ErhI	CCWWGG	3 cut(s)	149, 221, 662
FaeI	CATG	5 cut(s)	129, 359, 377, 432, 666
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	5 cut(s)	125, 355, 373, 428, 662
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	2 cut(s)	371, 550
FokI	GGATG	2 cut(s)	328, 512
Fsp4HI	GCNGC	2 cut(s)	371, 550
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	2 cut(s)	371, 550
HaeII	RGCGCY	1 cut(s)	351
HaeIII	GGCC	3 cut(s)	154, 584, 616
HapII	CCGG	1 cut(s)	185
HhaI	GCGC	1 cut(s)	350
Hin1II	CATG	5 cut(s)	129, 359, 377, 432, 666
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HinfI	GANTC	2 cut(s)	23, 425
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	3 cut(s)	18, 243, 571
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	2 cut(s)	356, 445
HpyAV	CCTTC	5 cut(s)	84, 106, 408, 442, 573
HpyCH4III	ACNGT	4 cut(s)	63, 104, 262, 332
HpyCH4V	TGCA	2 cut(s)	159, 170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	2 cut(s)	9, 618
Hsp92II	CATG	5 cut(s)	129, 359, 377, 432, 666
HspAI	GCGC	1 cut(s)	348
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	4 cut(s)	5, 287, 352, 362
LguI	GCTCTTC	1 cut(s)	129
LmnI	GCTCC	1 cut(s)	588
Lsp1109I	GCAGC	2 cut(s)	382, 561
MaeIII	GTNAC	1 cut(s)	24
MalI	GATC	4 cut(s)	7, 289, 354, 364
MboI	GATC	4 cut(s)	5, 287, 352, 362
MboII	GAAGA	5 cut(s)	143, 146, 297, 574, 679
MflI	RGATCY	1 cut(s)	5
MluCI	AATT	2 cut(s)	242, 475
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	2 cut(s)	246, 517
MnlI	CCTC	9 cut(s)	4, 228, 262, 313, 318, 429, 432, 454, 627
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	2 cut(s)	124, 260
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	3 cut(s)	141, 185, 586
MvaI	CCWGG	2 cut(s)	141, 586
MwoI	GCNNNNNNNGC	1 cut(s)	145
NciI	CCSGG	1 cut(s)	185
NcoI	CCATGG	1 cut(s)	662
NdeII	GATC	4 cut(s)	5, 287, 352, 362
NlaIII	CATG	5 cut(s)	129, 359, 377, 432, 666
NlaIV	GGNNCC	2 cut(s)	273, 660
NmuCI	GTSAC	1 cut(s)	24
OliI	CACNNNNGTG	1 cut(s)	260
PagI	TCATGA	1 cut(s)	355
PaqCI	CACCTGC	1 cut(s)	643
PceI	AGGCCT	2 cut(s)	154, 616
PciSI	GCTCTTC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	425
PkrI	GCNGC	2 cut(s)	372, 551
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
PpuMI	RGGWCCY	1 cut(s)	272
Psp5II	RGGWCCY	1 cut(s)	272
Psp6I	CCWGG	2 cut(s)	139, 584
PspGI	CCWGG	2 cut(s)	139, 584
PspN4I	GGNNCC	2 cut(s)	273, 660
PspPI	GGNCC	2 cut(s)	272, 582
PspPPI	RGGWCCY	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	5
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
RseI	CAYNNNNRTG	2 cut(s)	124, 260
SapI	GCTCTTC	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	2 cut(s)	371, 550
Sau3AI	GATC	4 cut(s)	5, 287, 352, 362
Sau96I	GGNCC	2 cut(s)	272, 582
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	3 cut(s)	141, 185, 586
SetI	ASST	8 cut(s)	36, 168, 296, 419, 465, 554, 593, 657
SfcI	CTRYAG	1 cut(s)	100
SinI	GGWCC	1 cut(s)	272
SmiMI	CAYNNNNRTG	2 cut(s)	124, 260
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	2 cut(s)	242, 475
SseBI	AGGCCT	2 cut(s)	154, 616
StuI	AGGCCT	2 cut(s)	154, 616
StyD4I	CCNGG	3 cut(s)	139, 183, 584
StyI	CCWWGG	3 cut(s)	149, 221, 662
TaaI	ACNGT	4 cut(s)	63, 104, 262, 332
TasI	AATT	2 cut(s)	242, 475
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	2 cut(s)	267, 538
TseFI	GTSAC	1 cut(s)	24
TseI	GCWGC	2 cut(s)	370, 549
Tsp45I	GTSAC	1 cut(s)	24
TspDTI	ATGAA	1 cut(s)	417
TspRI	CASTG	2 cut(s)	267, 538
VpaK11BI	GGWCC	1 cut(s)	272
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.