FvH4_7g19650

Tryptophan/tyrosine permease family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013714
Physical Location & Seq
Reverse (-)
16125284 .. 16128242
2959 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g19650.t2

Sequence Viewer

Length: 1158 bp
ATGGTAATATGTTGGGGGTTTCTCCTGATTGAGGCACTTTTACTTATTGAAATCAATGTAAGCATGAGGAGGAAGAAGGGAAAGGAAGACAAAGAGAATGAGTTGGAGGTCATTTCAATTAGGACTATGGCCCAAGAGACTCTAGGAGACTGGGGTGGAATTCTAGCCTCTCTAGTTTACATTTTCTTAGGTTATACTTCCATGGTTGCTTACAGTTCCAAGTCAGGGGAGATCCTTTTTCACCTTATCAATCTCCCAGCTCCAGTTTCTGGCATCTTTTTCACTACAGTTTTCACTCTTCTCATCTCCATTGGTGGGACTCGAGCTACGGATCAAGTTAACCAACTGCTCACTGCTTCAATGATAGGTTTACTAGTAGCAATAGAGGTGCTAGCAGTTATGTTTGGAGGTTGGTCAGGACCAGAAGGAAGTGGAGATTGGGGAAAAGTCCCGCCTACAATACCTGTCATAATATTTTCTTTGGTGTATCATGATCTAGCACCTGTTCTTTGTGCATATTTGGGCAGTGATCTTAAACGCTTAAGGATTTCGGTGGTTCTTGGTAGTCTTGTTCCATTGCTAGGATTACTTGTTTGGGATGCAATTGCTCTTGGCCTATCTGTCCAAGCTGACCAAATGGTTGACCCTGTTGAATTGCTTATGAGGGTGAAATGGAGTGGGGTTTCATATATGGTAGAAGCCTTTTCTCTCCTTGCAGTTGGAACATCACTGATTGGCACTCTTCTTGGCTTCTCTGAGTTTTTCAAAGAACAACTAAATAGCCTGTTGTCGAATTCTCCCCTCACACAAACACTGCAGAATCCAAACATACCCTTTAATCTAAGGGAATGGTGGGCTGGGAAAAATGTTAGCTTTACATCAGTGGCATTGGTTGTTGTTCCATCTCTTTTTGTGTCGACTACTATTCCTGATGCATTCTCTACTGCCACAGACATTGCTGGAGGGTATTGTATGACAATGCTATATGGAGTTCTTCCACCAGCAATGGCATGGGCAATGCATGATAAAGAAAGAGATGGTGCTTCTGATGGAAAGACTTTATCGAGAACAAGGCCAGTACTGGTTGCTGTAGGACTCCTTGCTTGTGGAATTGTGGGGGAGCAAATCCTTCAAGACATCCACATATTTCATTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trp_Tyr_perm

Protein Analysis

386

Amino Acids

41.75

Weight (kDa)

5.08

Isoelectric Point (pI)

35.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trp_Tyr_perm PF03222 2 - 260 1.5e-29 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013714)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g19650 FvH4_7g19650
malus_domestica MD07G1175000.v1.1
prunus_persica Prupe.2G214200_v2.0.a1 Prupe.2G214200_v2.0.a1 Prupe.2G214200_v2.0.a1
pyrus_communis pycom07g16940
rosa_chinensis RchiOBHm_Chr1g0363461
rosa_laevigata RLG00000027564
rosa_multiflora Rmu_sc0004458.1_g000002
rosa_roxburghii Rroxscaffold_4G00293160
rosa_rugosa Rorug01G0306900 Rorug01G0307000
rosa_samantha Rh1AG316100 Rh1BG279400 Rh1CG295700 Rh1DG310500
rosa_wichuraiana Rw1G027990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 269
AccI GTMKAC 1 cut(s) 917
AciI CCGC 1 cut(s) 452
AclWI GGATC 2 cut(s) 226, 339
AcsI RAATTY 2 cut(s) 159, 793
AfaI GTAC 1 cut(s) 1080
AfiI CCNNNNNNNGG 5 cut(s) 31, 225, 269, 315, 581
AflII CTTAAG 1 cut(s) 541
AgsI TTSAA 6 cut(s) 50, 117, 360, 653, 766, 1133
AhlI ACTAGT 1 cut(s) 373
AjuI GAANNNNNNNTTGG 2 cut(s) 421, 453
AluBI AGCT 4 cut(s) 260, 326, 629, 873
AluI AGCT 4 cut(s) 260, 326, 629, 873
Alw26I GTCTC 2 cut(s) 131, 141
AlwI GGATC 2 cut(s) 226, 339
AlwNI CAGNNNCTG 1 cut(s) 269
Ama87I CYCGRG 1 cut(s) 321
AoxI GGCC 3 cut(s) 129, 613, 1073
ApoI RAATTY 2 cut(s) 159, 793
AspS9I GGNCC 2 cut(s) 130, 419
AsuHPI GGTGA 2 cut(s) 233, 679
AsuNHI GCTAGC 1 cut(s) 391
AvaI CYCGRG 1 cut(s) 321
AvaII GGWCC 1 cut(s) 419
BbsI GAAGAC 1 cut(s) 93
BccI CCATC 3 cut(s) 910, 1031, 1043
BcoDI GTCTC 2 cut(s) 131, 141
BcuI ACTAGT 1 cut(s) 373
BfaI CTAG 8 cut(s) 143, 164, 173, 374, 392, 497, 581, 1156
BfmI CTRYAG 3 cut(s) 285, 815, 1089
BfrI CTTAAG 1 cut(s) 541
BmcAI AGTACT 1 cut(s) 1080
Bme18I GGWCC 1 cut(s) 419
BmeT110I CYCGRG 1 cut(s) 321
BmgT120I GGNCC 2 cut(s) 130, 419
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 3 cut(s) 282, 589, 922
BmtI GCTAGC 1 cut(s) 395
BmuI ACTGGG 1 cut(s) 160
BpiI GAAGAC 1 cut(s) 93
BpmI CTGGAG 2 cut(s) 246, 981
BsaJI CCNNGG 1 cut(s) 201
Bsc4I CCNNNNNNNGG 5 cut(s) 31, 225, 269, 315, 581
Bse1I ACTGG 4 cut(s) 155, 263, 1076, 1086
Bse3DI GCAATG 4 cut(s) 575, 954, 1011, 1023
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 2 cut(s) 604, 1137
BseLI CCNNNNNNNGG 5 cut(s) 31, 225, 269, 315, 581
BseMI GCAATG 4 cut(s) 575, 954, 1011, 1023
BseMII CTCAG 1 cut(s) 747
BseNI ACTGG 4 cut(s) 155, 263, 1076, 1086
BseRI GAGGAG 1 cut(s) 82
BseYI CCCAGC 2 cut(s) 256, 857
BshFI GGCC 3 cut(s) 131, 615, 1075
BsiHKCI CYCGRG 1 cut(s) 321
BslFI GGGAC 2 cut(s) 331, 434
BslI CCNNNNNNNGG 5 cut(s) 31, 225, 269, 315, 581
BsmAI GTCTC 2 cut(s) 131, 141
BsmFI GGGAC 2 cut(s) 331, 434
BsmI GAATGC 1 cut(s) 935
BsnI GGCC 3 cut(s) 131, 615, 1075
BsoBI CYCGRG 1 cut(s) 321
Bsp143I GATC 4 cut(s) 231, 331, 493, 529
Bsp19I CCATGG 1 cut(s) 201
BspACI CCGC 1 cut(s) 452
BspANI GGCC 3 cut(s) 131, 615, 1075
BspCNI CTCAG 1 cut(s) 748
BspHI TCATGA 1 cut(s) 490
BspMAI CTGCAG 1 cut(s) 819
BspOI GCTAGC 1 cut(s) 395
BspPI GGATC 2 cut(s) 226, 339
BspTI CTTAAG 1 cut(s) 541
BsrDI GCAATG 4 cut(s) 575, 954, 1011, 1023
BsrI ACTGG 4 cut(s) 155, 263, 1076, 1086
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 4 cut(s) 231, 331, 493, 529
BssT1I CCWWGG 1 cut(s) 201
Bst4CI ACNGT 2 cut(s) 215, 289
Bst6I CTCTTC 2 cut(s) 303, 747
BstAFI CTTAAG 1 cut(s) 541
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 3 cut(s) 187, 756, 842
BstDSI CCRYGG 1 cut(s) 201
BstENI CCTNNNNNAGG 1 cut(s) 29
BstF5I GGATG 2 cut(s) 604, 1137
BstKTI GATC 4 cut(s) 234, 334, 496, 532
BstMAI GTCTC 2 cut(s) 131, 141
BstMBI GATC 4 cut(s) 231, 331, 493, 529
BstSFI CTRYAG 3 cut(s) 285, 815, 1089
BstV2I GAAGAC 1 cut(s) 93
BstX2I RGATCY 1 cut(s) 231
BstYI RGATCY 1 cut(s) 231
BsuRI GGCC 3 cut(s) 131, 615, 1075
BtgI CCRYGG 1 cut(s) 201
BtsCI GGATG 2 cut(s) 604, 1137
BtsI GCAGTG 3 cut(s) 351, 532, 812
BtsIMutI CAGTG 5 cut(s) 351, 532, 728, 812, 888
Cac8I GCNNGC 1 cut(s) 393
CaiI CAGNNNCTG 1 cut(s) 269
CciI TCATGA 1 cut(s) 490
Cfr13I GGNCC 2 cut(s) 130, 419
Csp6I GTAC 1 cut(s) 1079
CspCI CAANNNNNGTGG 2 cut(s) 937, 972
CviAII CATG 5 cut(s) 64, 202, 491, 1011, 1022
CviQI GTAC 1 cut(s) 1079
DdeI CTNAG 3 cut(s) 187, 756, 842
DpnI GATC 4 cut(s) 233, 333, 495, 531
DpnII GATC 4 cut(s) 231, 331, 493, 529
Eam1104I CTCTTC 2 cut(s) 303, 747
EarI CTCTTC 2 cut(s) 303, 747
Eco130I CCWWGG 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 419
Eco88I CYCGRG 1 cut(s) 321
EcoNI CCTNNNNNAGG 1 cut(s) 29
EcoRI GAATTC 2 cut(s) 159, 793
EcoT14I CCWWGG 1 cut(s) 201
EcoT22I ATGCAT 2 cut(s) 937, 1023
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 5 cut(s) 67, 205, 494, 1014, 1025
FaqI GGGAC 2 cut(s) 331, 434
FatI CATG 5 cut(s) 63, 201, 490, 1010, 1021
FauI CCCGC 1 cut(s) 459
FblI GTMKAC 1 cut(s) 917
FokI GGATG 2 cut(s) 611, 1124
FspBI CTAG 8 cut(s) 143, 164, 173, 374, 392, 497, 581, 1156
GsaI CCCAGC 2 cut(s) 260, 861
GsuI CTGGAG 2 cut(s) 246, 981
HaeIII GGCC 3 cut(s) 131, 615, 1075
Hin1II CATG 5 cut(s) 67, 205, 494, 1014, 1025
HincII GTYRAC 3 cut(s) 340, 643, 918
HindII GTYRAC 3 cut(s) 340, 643, 918
HinfI GANTC 4 cut(s) 139, 319, 820, 1095
HpaI GTTAAC 1 cut(s) 340
HphI GGTGA 2 cut(s) 233, 679
Hpy166II GTNNAC 5 cut(s) 178, 340, 371, 643, 918
Hpy188I TCNGA 2 cut(s) 757, 1048
Hpy188III TCNNGA 6 cut(s) 25, 417, 491, 929, 1065, 1133
Hpy8I GTNNAC 5 cut(s) 178, 340, 371, 643, 918
HpyAV CCTTC 3 cut(s) 70, 419, 1139
HpyCH4III ACNGT 2 cut(s) 215, 289
HpyCH4V TGCA 6 cut(s) 515, 602, 716, 817, 935, 1021
HpyF3I CTNAG 3 cut(s) 187, 756, 842
Hsp92II CATG 5 cut(s) 67, 205, 494, 1014, 1025
KspAI GTTAAC 1 cut(s) 340
Kzo9I GATC 4 cut(s) 231, 331, 493, 529
LmnI GCTCC 2 cut(s) 265, 1120
LweI GCATC 3 cut(s) 282, 589, 922
MaeI CTAG 8 cut(s) 143, 164, 173, 374, 392, 497, 581, 1156
MalI GATC 4 cut(s) 233, 333, 495, 531
MboI GATC 4 cut(s) 231, 331, 493, 529
MboII GAAGA 5 cut(s) 85, 98, 290, 734, 986
MfeI CAATTG 1 cut(s) 603
MflI RGATCY 1 cut(s) 231
MluCI AATT 6 cut(s) 117, 159, 603, 653, 793, 1110
MlyI GAGTC 3 cut(s) 133, 313, 1089
MmeI TCCRAC 2 cut(s) 84, 700
Mph1103I ATGCAT 2 cut(s) 937, 1023
MseI TTAA 4 cut(s) 339, 534, 542, 837
MspCI CTTAAG 1 cut(s) 541
MunI CAATTG 1 cut(s) 603
Mva1269I GAATGC 1 cut(s) 935
NcoI CCATGG 1 cut(s) 201
NdeII GATC 4 cut(s) 231, 331, 493, 529
NheI GCTAGC 1 cut(s) 391
NlaIII CATG 5 cut(s) 67, 205, 494, 1014, 1025
NsiI ATGCAT 2 cut(s) 937, 1023
PaeR7I CTCGAG 1 cut(s) 321
PagI TCATGA 1 cut(s) 490
PctI GAATGC 1 cut(s) 935
PfeI GAWTC 1 cut(s) 820
PflMI CCANNNNNTGG 1 cut(s) 269
PleI GAGTC 3 cut(s) 133, 313, 1089
PpsI GAGTC 3 cut(s) 133, 313, 1089
PspFI CCCAGC 2 cut(s) 256, 857
PspPI GGNCC 2 cut(s) 130, 419
PspXI VCTCGAGB 1 cut(s) 321
PstI CTGCAG 1 cut(s) 819
PstNI CAGNNNCTG 1 cut(s) 269
PsuI RGATCY 1 cut(s) 231
RsaI GTAC 1 cut(s) 1080
RsaNI GTAC 1 cut(s) 1079
SalI GTCGAC 1 cut(s) 916
SaqAI TTAA 4 cut(s) 339, 534, 542, 837
Sau3AI GATC 4 cut(s) 231, 331, 493, 529
Sau96I GGNCC 2 cut(s) 130, 419
ScaI AGTACT 1 cut(s) 1080
SchI GAGTC 3 cut(s) 133, 313, 1089
SfaNI GCATC 3 cut(s) 282, 589, 922
SfcI CTRYAG 3 cut(s) 285, 815, 1089
Sfr274I CTCGAG 1 cut(s) 321
SinI GGWCC 1 cut(s) 419
SlaI CTCGAG 1 cut(s) 321
SmlI CTYRAG 2 cut(s) 321, 541
SmoI CTYRAG 2 cut(s) 321, 541
SpeI ACTAGT 1 cut(s) 373
Sse9I AATT 6 cut(s) 117, 159, 603, 653, 793, 1110
SsiI CCGC 1 cut(s) 452
SspI AATATT 1 cut(s) 474
SspMI CTAG 8 cut(s) 143, 164, 173, 374, 392, 497, 581, 1156
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 2 cut(s) 215, 289
TaqI TCGA 4 cut(s) 322, 791, 917, 1064
TasI AATT 6 cut(s) 117, 159, 603, 653, 793, 1110
TatI WGTACW 1 cut(s) 1078
TfiI GAWTC 1 cut(s) 820
Tru1I TTAA 4 cut(s) 339, 534, 542, 837
Tru9I TTAA 4 cut(s) 339, 534, 542, 837
TscAI CASTG 5 cut(s) 358, 532, 735, 819, 888
TspDTI ATGAA 2 cut(s) 675, 1139
TspGWI ACGGA 1 cut(s) 344
TspRI CASTG 5 cut(s) 358, 532, 735, 819, 888
Van91I CCANNNNNTGG 1 cut(s) 269
Vha464I CTTAAG 1 cut(s) 541
VpaK11BI GGWCC 1 cut(s) 419
XagI CCTNNNNNAGG 1 cut(s) 29
XapI RAATTY 2 cut(s) 159, 793
XcmI CCANNNNNNNNNTGG 1 cut(s) 1008
XhoI CTCGAG 1 cut(s) 321
XmiI GTMKAC 1 cut(s) 917
XspI CTAG 8 cut(s) 143, 164, 173, 374, 392, 497, 581, 1156
ZrmI AGTACT 1 cut(s) 1080
Zsp2I ATGCAT 2 cut(s) 937, 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.