Rh1BG279400

Tryptophan/tyrosine permease family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0013714
Physical Location & Seq
Reverse (-)
41563671 .. 41566711
3041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG279400.1

Sequence Viewer

Length: 1095 bp
ATGAGGAGGAGGAAGGGAAAGGAAGACAAAGAGAATGAGTTGGAGATCATTTCAATTAGGACTATGGCCCAAGAGACTCTAGGAGACTGGGGTGGAACTCTAGCCTCTCTGGTTTACATTTTCTTAGGTTATACTTCCATGATTTCTTACAGTTCCAAGTCTGGGGAGATCCTTTTTCACTTGATCAATCTCCCAGCTCCAGTTTCTGGCATCTTTTTCACTTCAGTTTTCACTATTCTCATTTCCATCGGTGGGACTCAAGCTACGGATCAAGTTAACCAACTGCTCACTGCTTCCATGATAGGTTTACTAGTAGCAATAGAGGTGCTAGCAGTTGTGTTTGGAGGTTGGTCAGGACTACAGGGAAGTGGAGATTGGGGAAAAGTCCCAAGTGCAATACCTGTCATAATATTTTCTTTGGTGTATCATGATCTAGCACCTGTTCTTTGTGCATATTTGGGCAGTGACCTCAAACGCTTAAGGATTTCGGTGGTTCTTGGTAGTCTTGTTCCATTGCTAGGACTACTTGTTTGGGATGCAATTGCTCTTGGCCTATCTGCCCAAGCTGACCAAATGGTTGACCCTGTTGAATTGCTTATGAGGGTGAAATGGAGTGGGGTTTCATATATGGTAGAAGCCTTTTCTCTCCTTGCAGTTGGAACATCACTAATTGGCACTCTTCTTGGCTTCTCCGAGTTTTTCAAAGAACAACTAAATAGCCTCTCATCGAATTCTCCCCTCACACAAAGGCTGCAGAAACCAAACATGCCCTTTGATCTGAGGAAATGGTGGGCAGGGAACAAAGTTAGCTTCACATCAGTAGCATTGATCGTTGTTCCATCTCTTTTTGTGTCGACTACTGTTCCGGATGCATTCTCTACTGCCACAGACGTTGCTGGAGGGTATTGTATGACAATGCTATATGGAGTTCTTCCACCAGCAATGGCTTGGGCAATGCATAGTAAAGAAAGAGACAATGCTTCTGATGAAAAGACTTTATCGAGAGCTAGGCCAGTACTGGTTGCGGTAGGACTTCTTGCTTGCGGAATCGTGGCAGAGCAAATCCTTCAAGACATCCTCATATTACATTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trp_Tyr_perm

Protein Analysis

364

Amino Acids

39.38

Weight (kDa)

5.63

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trp_Tyr_perm PF03222 18 - 343 6.4e-34 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013714)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g19650 FvH4_7g19650
malus_domestica MD07G1175000.v1.1
prunus_persica Prupe.2G214200_v2.0.a1 Prupe.2G214200_v2.0.a1 Prupe.2G214200_v2.0.a1
pyrus_communis pycom07g16940
rosa_chinensis RchiOBHm_Chr1g0363461
rosa_laevigata RLG00000027564
rosa_multiflora Rmu_sc0004458.1_g000002
rosa_roxburghii Rroxscaffold_4G00293160
rosa_rugosa Rorug01G0306900 Rorug01G0307000
rosa_samantha Rh1AG316100 Rh1BG279400 Rh1CG295700 Rh1DG310500
rosa_wichuraiana Rw1G027990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 206
AccI GTMKAC 1 cut(s) 854
AccIII TCCGGA 1 cut(s) 865
AciI CCGC 2 cut(s) 1025, 1044
AclWI GGATC 2 cut(s) 163, 276
AcsI RAATTY 1 cut(s) 730
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 1 cut(s) 1017
AfiI CCNNNNNNNGG 4 cut(s) 162, 206, 252, 518
AflII CTTAAG 1 cut(s) 478
AgsI TTSAA 4 cut(s) 54, 590, 703, 1070
AhlI ACTAGT 1 cut(s) 310
AjuI GAANNNNNNNTTGG 2 cut(s) 358, 390
AluBI AGCT 5 cut(s) 197, 263, 566, 810, 1007
AluI AGCT 5 cut(s) 197, 263, 566, 810, 1007
Alw26I GTCTC 3 cut(s) 68, 78, 966
AlwI GGATC 2 cut(s) 163, 276
AlwNI CAGNNNCTG 1 cut(s) 206
Aor13HI TCCGGA 1 cut(s) 865
AoxI GGCC 3 cut(s) 66, 550, 1010
ApeKI GCWGC 1 cut(s) 751
ApoI RAATTY 1 cut(s) 730
ArsI GACNNNNNNTTYG 2 cut(s) 513, 545
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 616
AsuNHI GCTAGC 1 cut(s) 328
BbsI GAAGAC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 738
BccI CCATC 2 cut(s) 254, 847
BclI TGATCA 1 cut(s) 183
BcoDI GTCTC 3 cut(s) 68, 78, 966
BcuI ACTAGT 1 cut(s) 310
BfaI CTAG 8 cut(s) 80, 101, 311, 329, 434, 518, 1008, 1093
BfmI CTRYAG 2 cut(s) 359, 752
BfrI CTTAAG 1 cut(s) 478
BisI GCNGC 1 cut(s) 752
BlsI GCNGC 1 cut(s) 753
BmcAI AGTACT 1 cut(s) 1017
BmgT120I GGNCC 1 cut(s) 67
BmrI ACTGGG 1 cut(s) 97
BmsI GCATC 3 cut(s) 219, 526, 859
BmtI GCTAGC 1 cut(s) 332
BmuI ACTGGG 1 cut(s) 97
BpiI GAAGAC 1 cut(s) 30
BpmI CTGGAG 2 cut(s) 183, 918
BpuEI CTTGAG 1 cut(s) 243
BsaWI WCCGGW 1 cut(s) 865
Bsc4I CCNNNNNNNGG 4 cut(s) 162, 206, 252, 518
Bse1I ACTGG 4 cut(s) 92, 200, 1013, 1023
Bse3DI GCAATG 3 cut(s) 512, 948, 960
BseAI TCCGGA 1 cut(s) 865
BseGI GGATG 3 cut(s) 541, 874, 1074
BseLI CCNNNNNNNGG 4 cut(s) 162, 206, 252, 518
BseMI GCAATG 3 cut(s) 512, 948, 960
BseMII CTCAG 1 cut(s) 770
BseNI ACTGG 4 cut(s) 92, 200, 1013, 1023
BseRI GAGGAG 2 cut(s) 19, 22
BseXI GCAGC 1 cut(s) 738
BseYI CCCAGC 1 cut(s) 193
BshFI GGCC 3 cut(s) 68, 552, 1012
BsiSI CCGG 1 cut(s) 866
BslFI GGGAC 2 cut(s) 268, 371
BslI CCNNNNNNNGG 4 cut(s) 162, 206, 252, 518
BsmAI GTCTC 3 cut(s) 68, 78, 966
BsmFI GGGAC 2 cut(s) 268, 371
BsmI GAATGC 1 cut(s) 872
BsnI GGCC 3 cut(s) 68, 552, 1012
Bsp13I TCCGGA 1 cut(s) 865
Bsp143I GATC 7 cut(s) 45, 168, 183, 268, 430, 775, 828
BspACI CCGC 2 cut(s) 1025, 1044
BspANI GGCC 3 cut(s) 68, 552, 1012
BspCNI CTCAG 1 cut(s) 771
BspEI TCCGGA 1 cut(s) 865
BspHI TCATGA 1 cut(s) 427
BspMAI CTGCAG 1 cut(s) 756
BspOI GCTAGC 1 cut(s) 332
BspPI GGATC 2 cut(s) 163, 276
BspTI CTTAAG 1 cut(s) 478
BsrDI GCAATG 3 cut(s) 512, 948, 960
BsrI ACTGG 4 cut(s) 92, 200, 1013, 1023
BssMI GATC 7 cut(s) 45, 168, 183, 268, 430, 775, 828
Bst4CI ACNGT 2 cut(s) 152, 862
Bst6I CTCTTC 1 cut(s) 684
BstAFI CTTAAG 1 cut(s) 478
BstC8I GCNNGC 2 cut(s) 330, 1042
BstDEI CTNAG 2 cut(s) 124, 779
BstF5I GGATG 3 cut(s) 541, 874, 1074
BstKTI GATC 7 cut(s) 48, 171, 186, 271, 433, 778, 831
BstMAI GTCTC 3 cut(s) 68, 78, 966
BstMBI GATC 7 cut(s) 45, 168, 183, 268, 430, 775, 828
BstNSI RCATGY 1 cut(s) 769
BstSFI CTRYAG 2 cut(s) 359, 752
BstV1I GCAGC 1 cut(s) 738
BstV2I GAAGAC 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 168
BstYI RGATCY 1 cut(s) 168
BsuRI GGCC 3 cut(s) 68, 552, 1012
BtsCI GGATG 3 cut(s) 541, 874, 1074
BtsI GCAGTG 2 cut(s) 288, 469
BtsIMutI CAGTG 2 cut(s) 288, 469
Cac8I GCNNGC 2 cut(s) 330, 1042
CaiI CAGNNNCTG 1 cut(s) 206
CciI TCATGA 1 cut(s) 427
Cfr13I GGNCC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 1016
CspCI CAANNNNNGTGG 2 cut(s) 874, 909
CviAII CATG 4 cut(s) 139, 298, 428, 766
CviQI GTAC 1 cut(s) 1016
DdeI CTNAG 2 cut(s) 124, 779
DpnI GATC 7 cut(s) 47, 170, 185, 270, 432, 777, 830
DpnII GATC 7 cut(s) 45, 168, 183, 268, 430, 775, 828
Eam1104I CTCTTC 1 cut(s) 684
EarI CTCTTC 1 cut(s) 684
Eco57I CTGAAG 1 cut(s) 207
EcoRI GAATTC 1 cut(s) 730
EcoT22I ATGCAT 2 cut(s) 874, 960
FaeI CATG 4 cut(s) 142, 301, 431, 769
FaqI GGGAC 2 cut(s) 268, 371
FatI CATG 4 cut(s) 138, 297, 427, 765
FbaI TGATCA 1 cut(s) 183
FblI GTMKAC 1 cut(s) 854
Fnu4HI GCNGC 1 cut(s) 752
FokI GGATG 3 cut(s) 548, 881, 1061
Fsp4HI GCNGC 1 cut(s) 752
FspBI CTAG 8 cut(s) 80, 101, 311, 329, 434, 518, 1008, 1093
GluI GCNGC 1 cut(s) 752
GsaI CCCAGC 1 cut(s) 197
GsuI CTGGAG 2 cut(s) 183, 918
HaeIII GGCC 3 cut(s) 68, 552, 1012
HapII CCGG 1 cut(s) 866
Hin1II CATG 4 cut(s) 142, 301, 431, 769
HincII GTYRAC 3 cut(s) 277, 580, 855
HindII GTYRAC 3 cut(s) 277, 580, 855
HinfI GANTC 3 cut(s) 76, 256, 1047
HpaI GTTAAC 1 cut(s) 277
HpaII CCGG 1 cut(s) 866
HphI GGTGA 1 cut(s) 616
Hpy166II GTNNAC 5 cut(s) 115, 277, 308, 580, 855
Hpy188I TCNGA 3 cut(s) 694, 780, 985
Hpy188III TCNNGA 5 cut(s) 354, 428, 866, 1002, 1070
Hpy8I GTNNAC 5 cut(s) 115, 277, 308, 580, 855
HpyAV CCTTC 2 cut(s) 7, 1076
HpyCH4III ACNGT 2 cut(s) 152, 862
HpyCH4IV ACGT 1 cut(s) 891
HpyCH4V TGCA 7 cut(s) 395, 452, 539, 653, 754, 872, 958
HpyF3I CTNAG 2 cut(s) 124, 779
HpySE526I ACGT 1 cut(s) 891
Hsp92II CATG 4 cut(s) 142, 301, 431, 769
Kpn2I TCCGGA 1 cut(s) 865
Ksp22I TGATCA 1 cut(s) 183
KspAI GTTAAC 1 cut(s) 277
Kzo9I GATC 7 cut(s) 45, 168, 183, 268, 430, 775, 828
LmnI GCTCC 1 cut(s) 202
Lsp1109I GCAGC 1 cut(s) 738
LweI GCATC 3 cut(s) 219, 526, 859
MaeI CTAG 8 cut(s) 80, 101, 311, 329, 434, 518, 1008, 1093
MaeII ACGT 1 cut(s) 891
MaeIII GTNAC 1 cut(s) 464
MalI GATC 7 cut(s) 47, 170, 185, 270, 432, 777, 830
MboI GATC 7 cut(s) 45, 168, 183, 268, 430, 775, 828
MboII GAAGA 3 cut(s) 35, 671, 923
MfeI CAATTG 1 cut(s) 540
MflI RGATCY 1 cut(s) 168
MluCI AATT 5 cut(s) 54, 540, 590, 669, 730
MlyI GAGTC 2 cut(s) 70, 250
MmeI TCCRAC 2 cut(s) 21, 637
Mph1103I ATGCAT 2 cut(s) 874, 960
MroI TCCGGA 1 cut(s) 865
MseI TTAA 2 cut(s) 276, 479
MspCI CTTAAG 1 cut(s) 478
MspI CCGG 1 cut(s) 866
MunI CAATTG 1 cut(s) 540
Mva1269I GAATGC 1 cut(s) 872
NdeII GATC 7 cut(s) 45, 168, 183, 268, 430, 775, 828
NheI GCTAGC 1 cut(s) 328
NlaIII CATG 4 cut(s) 142, 301, 431, 769
NmuCI GTSAC 1 cut(s) 464
NsiI ATGCAT 2 cut(s) 874, 960
NspI RCATGY 1 cut(s) 769
PagI TCATGA 1 cut(s) 427
PctI GAATGC 1 cut(s) 872
PfeI GAWTC 1 cut(s) 1047
PflMI CCANNNNNTGG 1 cut(s) 206
PkrI GCNGC 1 cut(s) 753
PleI GAGTC 2 cut(s) 70, 250
PpsI GAGTC 2 cut(s) 70, 250
PspFI CCCAGC 1 cut(s) 193
PspPI GGNCC 1 cut(s) 67
PstI CTGCAG 1 cut(s) 756
PstNI CAGNNNCTG 1 cut(s) 206
PsuI RGATCY 1 cut(s) 168
RsaI GTAC 1 cut(s) 1017
RsaNI GTAC 1 cut(s) 1016
SalI GTCGAC 1 cut(s) 853
SaqAI TTAA 2 cut(s) 276, 479
SatI GCNGC 1 cut(s) 752
Sau3AI GATC 7 cut(s) 45, 168, 183, 268, 430, 775, 828
Sau96I GGNCC 1 cut(s) 67
ScaI AGTACT 1 cut(s) 1017
SchI GAGTC 2 cut(s) 70, 250
SfaNI GCATC 3 cut(s) 219, 526, 859
SfcI CTRYAG 2 cut(s) 359, 752
SmlI CTYRAG 2 cut(s) 258, 478
SmoI CTYRAG 2 cut(s) 258, 478
SpeI ACTAGT 1 cut(s) 310
Sse9I AATT 5 cut(s) 54, 540, 590, 669, 730
SsiI CCGC 2 cut(s) 1025, 1044
SspI AATATT 1 cut(s) 411
SspMI CTAG 8 cut(s) 80, 101, 311, 329, 434, 518, 1008, 1093
TaaI ACNGT 2 cut(s) 152, 862
TaiI ACGT 1 cut(s) 894
TaqI TCGA 3 cut(s) 728, 854, 1001
TasI AATT 5 cut(s) 54, 540, 590, 669, 730
TatI WGTACW 1 cut(s) 1015
TfiI GAWTC 1 cut(s) 1047
Tru1I TTAA 2 cut(s) 276, 479
Tru9I TTAA 2 cut(s) 276, 479
TscAI CASTG 2 cut(s) 295, 469
TseFI GTSAC 1 cut(s) 464
TseI GCWGC 1 cut(s) 751
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 2 cut(s) 612, 1002
TspGWI ACGGA 1 cut(s) 281
TspRI CASTG 2 cut(s) 295, 469
Van91I CCANNNNNTGG 1 cut(s) 206
Vha464I CTTAAG 1 cut(s) 478
XapI RAATTY 1 cut(s) 730
XceI RCATGY 1 cut(s) 769
XcmI CCANNNNNNNNNTGG 1 cut(s) 945
XmiI GTMKAC 1 cut(s) 854
XspI CTAG 8 cut(s) 80, 101, 311, 329, 434, 518, 1008, 1093
ZrmI AGTACT 1 cut(s) 1017
Zsp2I ATGCAT 2 cut(s) 874, 960
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.