Rh1CG295700

Tryptophan/tyrosine permease family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0013714
Physical Location & Seq
Reverse (-)
56862497 .. 56865006
2510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG295700.1

Sequence Viewer

Length: 1533 bp
ATGGATTCAAATTGCATCACTTCATCTACCTCCTTGCATATGAGAAGCCACTTCAACCCAAAGACAAATCACTCCTGGGCTAGACTACATCATCAAAATAGCACCAGTAATTTCAGGATCTATCATGCTTGTTCCTATAGCCAACAACTGCAGCAGCAGCAGCAAACTTCATCGTTTACTCGAAATGGTTTTGTCAAAAAGGCAAAGACAGCTGTTATACGGTTGAGCTTGGATGTAAAGCCCATCAAGGATCCCAATAAGAAGAAAGGAACTATTGCAGGGGCCGTTGCTTTGATAATTGGTACTAGTATAGGCTCAGGGATTCTTGCACTCCCAGAGAAAGCTTCTCCAGCGGGATTTATTCCAAGTTCAATATCGATAGTAATATGTTGGGGATTTCTCCTGATTGAGGCTCTTGTACTGATTGAAATCAATGTAAGCATGAGGAGGAGGAAGGGAAAGGAAGACAAAGAGAATGAGTTGGAGATCATTTCAATTAGGACTATGGCCCAAGAGACTCTAGGAGACTGGGGTGGAACTCTAGCCTCTCTGGTTTACATTTTCTTAGGTTATACTTCCATGATTTCTTACAGTTCCAAATCTGGGGAGATCCTTTTTCACTTGATCAATCTCCCAGCTCCAGTTTCTGGCATCTTTTTCACTTCAGTTTTCACTCTTCTCATTTCCATCGGTGGGACTCAAGCTACGGATCAAGTTAACCAACTGCTCACTGCTTCCATGATAGGTTTACTAGTAGCAATAGAGGTGCTAGCAGTTGTGTTTGGGGGTTGGTCAGGACTACAGGGAAGTGGAGATTGGGGAAAAGTCCCACCTGCAATACCTGTCATAATATTTTCTTTGGTGTATCATGATCTAGCACCTGTTCTTTGTGCATATTTGGGCAGTGATCTCAAACGCTTAAGGATTTCGGTGGTTCTTGGTAGTCTTGTTCCATTGCTAGGACTACTTGTTTGGGATGCAATTGCTCTTGGCCTATCTGCCCAAGCCGACCAAATGGTTGACCCTGTTGAATTGCTTATGAGGGTGAAATGGAGTGGGGTTTCATATATGGTAGAAGCCTTTTCTCTCCTTGCAGTTGGAACATCACTAATTGGCACTCTTCTTGGCTTCTCTGAGTTTTTCAAAGAACAACTAAATAGCCTCTCATCGAATTCTCCCCTCACACAAACACAGAAACCAAACATGCCCTTTGGTCTGAGGAAATGGTGGGCAGGGAATAAAGTTAGCTTGACATCAGTGGCATTGGTTGTTGTTCCATCTCTTTTTGTGTCGACTACTGTTCCGGATGCATTCTCTACTGCCACAGACGTTGCTGGAGGGTATTGTATGACAATGCTATATGGTGTTCTTCCACCAGCAATGGCTTGGGCAATGCATAATAAAGAAAGAGACAATGCTTCTGATCAAAAGACTTTATCGAGAGCAAGGCCAGTACTGGTGGCGGTAGGACTCCTTGCTTGCGGAATTGTGGCAGAGCAAATCCTTCAAGACATCCTCATATTTCAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trp_Tyr_perm

Protein Analysis

510

Amino Acids

55.21

Weight (kDa)

8.89

Isoelectric Point (pI)

39.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 89 - 269 2.6e-07 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 91 - 489 3.4e-47 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013714)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g19650 FvH4_7g19650
malus_domestica MD07G1175000.v1.1
prunus_persica Prupe.2G214200_v2.0.a1 Prupe.2G214200_v2.0.a1 Prupe.2G214200_v2.0.a1
pyrus_communis pycom07g16940
rosa_chinensis RchiOBHm_Chr1g0363461
rosa_laevigata RLG00000027564
rosa_multiflora Rmu_sc0004458.1_g000002
rosa_roxburghii Rroxscaffold_4G00293160
rosa_rugosa Rorug01G0306900 Rorug01G0307000
rosa_samantha Rh1AG316100 Rh1BG279400 Rh1CG295700 Rh1DG310500
rosa_wichuraiana Rw1G027990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 841
Acc36I ACCTGC 1 cut(s) 841
AccB7I CCANNNNNTGG 1 cut(s) 647
AccI GTMKAC 1 cut(s) 1292
AccIII TCCGGA 1 cut(s) 1303
AciI CCGC 3 cut(s) 353, 1463, 1482
AclWI GGATC 5 cut(s) 125, 245, 258, 604, 717
AcsI RAATTY 1 cut(s) 1171
AcuI CTGAAG 1 cut(s) 648
AfaI GTAC 3 cut(s) 304, 420, 1455
AfiI CCNNNNNNNGG 5 cut(s) 409, 603, 647, 693, 959
AflII CTTAAG 1 cut(s) 919
AgsI TTSAA 9 cut(s) 9, 55, 372, 428, 495, 1031, 1144, 1508, 1526
AhlI ACTAGT 2 cut(s) 305, 751
AjnI CCWGG 1 cut(s) 74
AjuI GAANNNNNNNTTGG 2 cut(s) 799, 831
AluBI AGCT 6 cut(s) 212, 228, 344, 638, 704, 1248
AluI AGCT 6 cut(s) 212, 228, 344, 638, 704, 1248
Alw26I GTCTC 3 cut(s) 509, 519, 1404
AlwI GGATC 5 cut(s) 125, 245, 258, 604, 717
AlwNI CAGNNNCTG 1 cut(s) 647
Aor13HI TCCGGA 1 cut(s) 1303
AoxI GGCC 4 cut(s) 282, 507, 991, 1448
ApeKI GCWGC 4 cut(s) 151, 154, 157, 160
ApoI RAATTY 1 cut(s) 1171
ArsI GACNNNNNNTTYG 2 cut(s) 954, 986
AspS9I GGNCC 2 cut(s) 282, 508
AsuHPI GGTGA 1 cut(s) 1057
AsuNHI GCTAGC 1 cut(s) 769
BamHI GGATCC 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 471
BbvI GCAGC 4 cut(s) 163, 166, 169, 172
BccI CCATC 3 cut(s) 251, 695, 1285
BceAI ACGGC 1 cut(s) 269
BciT130I CCWGG 1 cut(s) 76
BclI TGATCA 2 cut(s) 624, 1423
BcoDI GTCTC 3 cut(s) 509, 519, 1404
BcuI ACTAGT 2 cut(s) 305, 751
BfaI CTAG 9 cut(s) 81, 306, 521, 542, 752, 770, 875, 959, 1531
BfmI CTRYAG 3 cut(s) 136, 149, 800
BfrI CTTAAG 1 cut(s) 919
BfuAI ACCTGC 1 cut(s) 841
BisI GCNGC 4 cut(s) 152, 155, 158, 161
BlsI GCNGC 4 cut(s) 153, 156, 159, 162
BmcAI AGTACT 1 cut(s) 1455
Bme1390I CCNGG 1 cut(s) 76
BmgT120I GGNCC 2 cut(s) 282, 508
BmiI GGNNCC 2 cut(s) 252, 283
BmrFI CCNGG 1 cut(s) 76
BmrI ACTGGG 1 cut(s) 538
BmsI GCATC 4 cut(s) 24, 660, 967, 1297
BmtI GCTAGC 1 cut(s) 773
BmuI ACTGGG 1 cut(s) 538
BpiI GAAGAC 1 cut(s) 471
BpmI CTGGAG 3 cut(s) 333, 624, 1356
Bpu10I CCTNAGC 1 cut(s) 316
BpuEI CTTGAG 1 cut(s) 684
Bsa29I ATCGAT 1 cut(s) 377
BsaBI GATNNNNATC 1 cut(s) 428
BsaJI CCNNGG 1 cut(s) 75
BsaWI WCCGGW 1 cut(s) 1303
Bsc4I CCNNNNNNNGG 5 cut(s) 409, 603, 647, 693, 959
Bse1I ACTGG 5 cut(s) 105, 533, 641, 1451, 1461
Bse3DI GCAATG 3 cut(s) 953, 1386, 1398
Bse8I GATNNNNATC 1 cut(s) 428
BseAI TCCGGA 1 cut(s) 1303
BseBI CCWGG 1 cut(s) 76
BseCI ATCGAT 1 cut(s) 377
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 4 cut(s) 238, 982, 1312, 1512
BseJI GATNNNNATC 1 cut(s) 428
BseLI CCNNNNNNNGG 5 cut(s) 409, 603, 647, 693, 959
BseMI GCAATG 3 cut(s) 953, 1386, 1398
BseMII CTCAG 3 cut(s) 330, 1125, 1208
BseNI ACTGG 5 cut(s) 105, 533, 641, 1451, 1461
BseRI GAGGAG 2 cut(s) 460, 463
BseXI GCAGC 4 cut(s) 163, 166, 169, 172
BseYI CCCAGC 1 cut(s) 634
BshFI GGCC 4 cut(s) 284, 509, 993, 1450
BshVI ATCGAT 1 cut(s) 377
BsiSI CCGG 1 cut(s) 1304
BslFI GGGAC 2 cut(s) 709, 812
BslI CCNNNNNNNGG 5 cut(s) 409, 603, 647, 693, 959
BsmAI GTCTC 3 cut(s) 509, 519, 1404
BsmFI GGGAC 2 cut(s) 709, 812
BsmI GAATGC 1 cut(s) 1310
BsnI GGCC 4 cut(s) 284, 509, 993, 1450
Bsp13I TCCGGA 1 cut(s) 1303
Bsp143I GATC 9 cut(s) 117, 250, 486, 609, 624, 709, 871, 907, 1423
BspACI CCGC 3 cut(s) 353, 1463, 1482
BspANI GGCC 4 cut(s) 284, 509, 993, 1450
BspCNI CTCAG 3 cut(s) 329, 1126, 1209
BspDI ATCGAT 1 cut(s) 377
BspEI TCCGGA 1 cut(s) 1303
BspHI TCATGA 1 cut(s) 868
BspLI GGNNCC 2 cut(s) 252, 283
BspMAI CTGCAG 1 cut(s) 153
BspMI ACCTGC 1 cut(s) 841
BspOI GCTAGC 1 cut(s) 773
BspPI GGATC 5 cut(s) 125, 245, 258, 604, 717
BspTI CTTAAG 1 cut(s) 919
BsrDI GCAATG 3 cut(s) 953, 1386, 1398
BsrI ACTGG 5 cut(s) 105, 533, 641, 1451, 1461
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 9 cut(s) 117, 250, 486, 609, 624, 709, 871, 907, 1423
Bst2UI CCWGG 1 cut(s) 76
Bst4CI ACNGT 3 cut(s) 222, 593, 1300
Bst6I CTCTTC 2 cut(s) 681, 1125
BstAFI CTTAAG 1 cut(s) 919
BstC8I GCNNGC 2 cut(s) 771, 1480
BstDEI CTNAG 4 cut(s) 316, 565, 1134, 1217
BstENI CCTNNNNNAGG 1 cut(s) 407
BstF5I GGATG 4 cut(s) 238, 982, 1312, 1512
BstKTI GATC 9 cut(s) 120, 253, 489, 612, 627, 712, 874, 910, 1426
BstMAI GTCTC 3 cut(s) 509, 519, 1404
BstMBI GATC 9 cut(s) 117, 250, 486, 609, 624, 709, 871, 907, 1423
BstMWI GCNNNNNNNGC 4 cut(s) 157, 160, 209, 350
BstNI CCWGG 1 cut(s) 76
BstNSI RCATGY 1 cut(s) 1207
BstSCI CCNGG 1 cut(s) 74
BstSFI CTRYAG 3 cut(s) 136, 149, 800
BstV1I GCAGC 4 cut(s) 163, 166, 169, 172
BstV2I GAAGAC 1 cut(s) 471
BstX2I RGATCY 3 cut(s) 117, 250, 609
BstYI RGATCY 3 cut(s) 117, 250, 609
Bsu15I ATCGAT 1 cut(s) 377
BsuRI GGCC 4 cut(s) 284, 509, 993, 1450
BsuTUI ATCGAT 1 cut(s) 377
BtsCI GGATG 4 cut(s) 238, 982, 1312, 1512
BtsI GCAGTG 2 cut(s) 729, 910
BtsIMutI CAGTG 3 cut(s) 729, 910, 1263
BveI ACCTGC 1 cut(s) 841
Cac8I GCNNGC 2 cut(s) 771, 1480
CaiI CAGNNNCTG 1 cut(s) 647
CciI TCATGA 1 cut(s) 868
Cfr13I GGNCC 2 cut(s) 282, 508
ClaI ATCGAT 1 cut(s) 377
Csp6I GTAC 3 cut(s) 303, 419, 1454
CspCI CAANNNNNGTGG 2 cut(s) 1312, 1347
CviAII CATG 6 cut(s) 125, 442, 580, 739, 869, 1204
CviQI GTAC 3 cut(s) 303, 419, 1454
DdeI CTNAG 4 cut(s) 316, 565, 1134, 1217
DpnI GATC 9 cut(s) 119, 252, 488, 611, 626, 711, 873, 909, 1425
DpnII GATC 9 cut(s) 117, 250, 486, 609, 624, 709, 871, 907, 1423
Eam1104I CTCTTC 2 cut(s) 681, 1125
EarI CTCTTC 2 cut(s) 681, 1125
Eco57I CTGAAG 1 cut(s) 648
EcoNI CCTNNNNNAGG 1 cut(s) 407
EcoRI GAATTC 1 cut(s) 1171
EcoRII CCWGG 1 cut(s) 74
EcoT22I ATGCAT 2 cut(s) 1312, 1398
FaeI CATG 6 cut(s) 128, 445, 583, 742, 872, 1207
FaqI GGGAC 2 cut(s) 709, 812
FatI CATG 6 cut(s) 124, 441, 579, 738, 868, 1203
FauI CCCGC 1 cut(s) 346
FauNDI CATATG 1 cut(s) 39
FbaI TGATCA 2 cut(s) 624, 1423
FblI GTMKAC 1 cut(s) 1292
Fnu4HI GCNGC 4 cut(s) 152, 155, 158, 161
FokI GGATG 4 cut(s) 245, 989, 1319, 1499
Fsp4HI GCNGC 4 cut(s) 152, 155, 158, 161
FspBI CTAG 9 cut(s) 81, 306, 521, 542, 752, 770, 875, 959, 1531
GluI GCNGC 4 cut(s) 152, 155, 158, 161
GsaI CCCAGC 1 cut(s) 638
GsuI CTGGAG 3 cut(s) 333, 624, 1356
HaeIII GGCC 4 cut(s) 284, 509, 993, 1450
HapII CCGG 1 cut(s) 1304
Hin1II CATG 6 cut(s) 128, 445, 583, 742, 872, 1207
HincII GTYRAC 3 cut(s) 718, 1021, 1293
HindII GTYRAC 3 cut(s) 718, 1021, 1293
HindIII AAGCTT 1 cut(s) 342
HinfI GANTC 5 cut(s) 5, 322, 517, 697, 1470
HpaI GTTAAC 1 cut(s) 718
HpaII CCGG 1 cut(s) 1304
HphI GGTGA 1 cut(s) 1057
Hpy166II GTNNAC 6 cut(s) 177, 556, 718, 749, 1021, 1293
Hpy188I TCNGA 3 cut(s) 1135, 1218, 1423
Hpy188III TCNNGA 7 cut(s) 115, 403, 795, 869, 1304, 1440, 1508
Hpy8I GTNNAC 6 cut(s) 177, 556, 718, 749, 1021, 1293
HpyAV CCTTC 2 cut(s) 448, 1514
HpyCH4III ACNGT 3 cut(s) 222, 593, 1300
HpyCH4IV ACGT 1 cut(s) 1329
HpyF10VI GCNNNNNNNGC 4 cut(s) 157, 160, 209, 350
HpyF3I CTNAG 4 cut(s) 316, 565, 1134, 1217
HpySE526I ACGT 1 cut(s) 1329
Hsp92II CATG 6 cut(s) 128, 445, 583, 742, 872, 1207
Kpn2I TCCGGA 1 cut(s) 1303
Ksp22I TGATCA 2 cut(s) 624, 1423
KspAI GTTAAC 1 cut(s) 718
Kzo9I GATC 9 cut(s) 117, 250, 486, 609, 624, 709, 871, 907, 1423
LmnI GCTCC 1 cut(s) 643
Lsp1109I GCAGC 4 cut(s) 163, 166, 169, 172
LweI GCATC 4 cut(s) 24, 660, 967, 1297
MaeI CTAG 9 cut(s) 81, 306, 521, 542, 752, 770, 875, 959, 1531
MaeII ACGT 1 cut(s) 1329
MalI GATC 9 cut(s) 119, 252, 488, 611, 626, 711, 873, 909, 1425
MboI GATC 9 cut(s) 117, 250, 486, 609, 624, 709, 871, 907, 1423
MboII GAAGA 5 cut(s) 274, 476, 668, 1112, 1361
MfeI CAATTG 1 cut(s) 981
MflI RGATCY 3 cut(s) 117, 250, 609
MlyI GAGTC 3 cut(s) 511, 691, 1464
MmeI TCCRAC 2 cut(s) 462, 1078
Mph1103I ATGCAT 2 cut(s) 1312, 1398
MroI TCCGGA 1 cut(s) 1303
MseI TTAA 2 cut(s) 717, 920
MspA1I CMGCKG 2 cut(s) 212, 353
MspCI CTTAAG 1 cut(s) 919
MspI CCGG 1 cut(s) 1304
MspR9I CCNGG 1 cut(s) 76
MunI CAATTG 1 cut(s) 981
Mva1269I GAATGC 1 cut(s) 1310
MvaI CCWGG 1 cut(s) 76
MwoI GCNNNNNNNGC 4 cut(s) 157, 160, 209, 350
NdeI CATATG 1 cut(s) 39
NdeII GATC 9 cut(s) 117, 250, 486, 609, 624, 709, 871, 907, 1423
NheI GCTAGC 1 cut(s) 769
NlaIII CATG 6 cut(s) 128, 445, 583, 742, 872, 1207
NlaIV GGNNCC 2 cut(s) 252, 283
NsiI ATGCAT 2 cut(s) 1312, 1398
NspI RCATGY 1 cut(s) 1207
PagI TCATGA 1 cut(s) 868
PaqCI CACCTGC 1 cut(s) 841
PctI GAATGC 1 cut(s) 1310
PfeI GAWTC 2 cut(s) 5, 322
PflMI CCANNNNNTGG 1 cut(s) 647
PkrI GCNGC 4 cut(s) 153, 156, 159, 162
PleI GAGTC 3 cut(s) 511, 691, 1464
PpsI GAGTC 3 cut(s) 511, 691, 1464
Psp6I CCWGG 1 cut(s) 74
PspFI CCCAGC 1 cut(s) 634
PspGI CCWGG 1 cut(s) 74
PspN4I GGNNCC 2 cut(s) 252, 283
PspPI GGNCC 2 cut(s) 282, 508
PstI CTGCAG 1 cut(s) 153
PstNI CAGNNNCTG 1 cut(s) 647
PsuI RGATCY 3 cut(s) 117, 250, 609
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 3 cut(s) 304, 420, 1455
RsaNI GTAC 3 cut(s) 303, 419, 1454
SalI GTCGAC 1 cut(s) 1291
SaqAI TTAA 2 cut(s) 717, 920
SatI GCNGC 4 cut(s) 152, 155, 158, 161
Sau3AI GATC 9 cut(s) 117, 250, 486, 609, 624, 709, 871, 907, 1423
Sau96I GGNCC 2 cut(s) 282, 508
ScaI AGTACT 1 cut(s) 1455
SchI GAGTC 3 cut(s) 511, 691, 1464
ScrFI CCNGG 1 cut(s) 76
SfaNI GCATC 4 cut(s) 24, 660, 967, 1297
SfcI CTRYAG 3 cut(s) 136, 149, 800
SmlI CTYRAG 2 cut(s) 699, 919
SmoI CTYRAG 2 cut(s) 699, 919
SpeI ACTAGT 2 cut(s) 305, 751
SsiI CCGC 3 cut(s) 353, 1463, 1482
SspI AATATT 1 cut(s) 852
SspMI CTAG 9 cut(s) 81, 306, 521, 542, 752, 770, 875, 959, 1531
StyD4I CCNGG 1 cut(s) 74
TaaI ACNGT 3 cut(s) 222, 593, 1300
TaiI ACGT 1 cut(s) 1332
TaqI TCGA 5 cut(s) 181, 377, 1169, 1292, 1439
TatI WGTACW 2 cut(s) 418, 1453
TfiI GAWTC 2 cut(s) 5, 322
Tru1I TTAA 2 cut(s) 717, 920
Tru9I TTAA 2 cut(s) 717, 920
TscAI CASTG 3 cut(s) 736, 910, 1263
TseI GCWGC 4 cut(s) 151, 154, 157, 160
TspDTI ATGAA 3 cut(s) 12, 159, 1053
TspGWI ACGGA 1 cut(s) 722
TspRI CASTG 3 cut(s) 736, 910, 1263
Van91I CCANNNNNTGG 1 cut(s) 647
Vha464I CTTAAG 1 cut(s) 919
XagI CCTNNNNNAGG 1 cut(s) 407
XapI RAATTY 1 cut(s) 1171
XceI RCATGY 1 cut(s) 1207
XcmI CCANNNNNNNNNTGG 1 cut(s) 1383
XmiI GTMKAC 1 cut(s) 1292
XspI CTAG 9 cut(s) 81, 306, 521, 542, 752, 770, 875, 959, 1531
ZrmI AGTACT 1 cut(s) 1455
Zsp2I ATGCAT 2 cut(s) 1312, 1398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.