Rw1G027990

Tryptophan/tyrosine permease family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0013714
Physical Location & Seq
Reverse (-)
55503818 .. 55507987
4170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G027990.1

Sequence Viewer

Length: 1413 bp
ATGGATTCAAATTGCATCACTTCATCTACCTCCTTGCATATGAGAAGCCACTTCAACCCAAAGACAAATCACTCCTGGGCTAGACTACATCATCAAAATAGCACCAGTAATTTCAGGATCTCCACAAATTTCTTTATGATTTCAAATTCTTTGACCATAAACATATATTCCTCCATCTGCAGCTATCATGCTTGTTCCTATAGCCAACAACTGCAGCAGCAGCAGCAAACTTCATCGTTTACTCGAAATGGTTTTGTCAAAAAGGCAAAGACAGCTGTTATACGGTTGAGCTTGGATGTAAAGCCCATCAAGGATCCCAATAAGAAGAAAGGAACTATTGCAGGGGCCGTTGCTTTGATAATTGGTACTAGTATAGGCTCAGGGATTCTTGCACTCCCAGAGAAAGCTTCTCCAGCGGGATTTATTCCAAGTTCAATATCGATAGTAATATGTTGGGGATTTCTCCTGATTGAGGCTCTTGTACTGATTGAAATCAATGTAAGCATGAGGAGGAGGAAGGGAAAGGAAGACAAAGAGAATGAGTTGGAGATCATTTCAATTAGGACTATGGCCCAAGAGACTCTAGGAGACTGGGGTGGAACTCTAGCCTCTCTGGTTTACATTTTCTTAGGTTATACTTCCATGATTTCTTACAGTTCCAAATCTGGGGAGATCCTTTTTCACTTGATCAATCTCCCAGCTCCAGTTTCTGGCATCTTTTTCACTTCAGTTTTCACTCTTCTCATTTCCATCGGTGGGACTCAAGCTACGGATCAAGTTAACCAACTGCTCACTGCTTCCATGATAGGTTTACTAGTAGCAATAGAGGTGCTAGCAGTTGTGTTTGGGGGTTGGTCAGGACTACAGGGAAGTGGAGATTGGGGAAAAGTCCCACCTGCAATACCTGTCATAATATTTTCTTTGGTGTATCATGATCTAGCACCTGTTCTTTGTGCATATTTGGGCAGTGATCTCAAACGCTTAAGGATTTCGGTGGTTCTTGGTAGTCTTGTTCCATTGCTAGGACTACTTGTTTGGGATGCAATTGCTCTTGGCCTATCTGCCCAAGCCGACCAAATGGTTGACCCTGTTGAATTGCTTATGAGGGTGAAATGGAGTGGGGTTTCATATATGGTAGAAGCCTTTTCTCTCCTTGCAGTTGGAACATCACTAATTGGCACTCTTCTTGGCTTCTCTGAGTTTTTCAAAGAACAACTAAATAGCCTCTCATCGAATTCTCCCCTCACACAAACACAGAAACCAAACATGCCCTTTGGTCTGAGGAAATGGTGGGCAGGGAATAAAGTTAGCTTGACATCAGTGGCATTGGTTGTTGTTCCATCTCTTTTTGTGTCGACTACTGTTCCGGATGCATTCTCTACTGCCACAGACGTTGCTGTAAATGTCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trp_Tyr_perm

Protein Analysis

470

Amino Acids

50.86

Weight (kDa)

8.84

Isoelectric Point (pI)

34.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 110 - 289 4.1e-07 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 112 - 408 2.5e-40 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013714)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g19650 FvH4_7g19650
malus_domestica MD07G1175000.v1.1
prunus_persica Prupe.2G214200_v2.0.a1 Prupe.2G214200_v2.0.a1 Prupe.2G214200_v2.0.a1
pyrus_communis pycom07g16940
rosa_chinensis RchiOBHm_Chr1g0363461
rosa_laevigata RLG00000027564
rosa_multiflora Rmu_sc0004458.1_g000002
rosa_roxburghii Rroxscaffold_4G00293160
rosa_rugosa Rorug01G0306900 Rorug01G0307000
rosa_samantha Rh1AG316100 Rh1BG279400 Rh1CG295700 Rh1DG310500
rosa_wichuraiana Rw1G027990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 904
Acc36I ACCTGC 1 cut(s) 904
AccB7I CCANNNNNTGG 1 cut(s) 710
AccI GTMKAC 1 cut(s) 1355
AccIII TCCGGA 1 cut(s) 1366
AciI CCGC 1 cut(s) 416
AclWI GGATC 5 cut(s) 125, 308, 321, 667, 780
AcsI RAATTY 3 cut(s) 127, 145, 1234
AcuI CTGAAG 1 cut(s) 711
AfaI GTAC 2 cut(s) 367, 483
AfiI CCNNNNNNNGG 5 cut(s) 472, 666, 710, 756, 1022
AflII CTTAAG 1 cut(s) 982
AgsI TTSAA 8 cut(s) 9, 55, 144, 435, 491, 558, 1094, 1207
AhlI ACTAGT 2 cut(s) 368, 814
AjnI CCWGG 1 cut(s) 74
AjuI GAANNNNNNNTTGG 2 cut(s) 862, 894
AluBI AGCT 7 cut(s) 183, 275, 291, 407, 701, 767, 1311
AluI AGCT 7 cut(s) 183, 275, 291, 407, 701, 767, 1311
Alw26I GTCTC 2 cut(s) 572, 582
AlwI GGATC 5 cut(s) 125, 308, 321, 667, 780
AlwNI CAGNNNCTG 1 cut(s) 710
Aor13HI TCCGGA 1 cut(s) 1366
AoxI GGCC 3 cut(s) 345, 570, 1054
ApeKI GCWGC 5 cut(s) 180, 214, 217, 220, 223
ApoI RAATTY 3 cut(s) 127, 145, 1234
ArsI GACNNNNNNTTYG 2 cut(s) 1017, 1049
AspS9I GGNCC 2 cut(s) 345, 571
AsuHPI GGTGA 1 cut(s) 1120
AsuNHI GCTAGC 1 cut(s) 832
BamHI GGATCC 1 cut(s) 313
BbsI GAAGAC 1 cut(s) 534
BbvI GCAGC 5 cut(s) 192, 226, 229, 232, 235
BccI CCATC 4 cut(s) 182, 314, 758, 1348
BceAI ACGGC 1 cut(s) 332
BciT130I CCWGG 1 cut(s) 76
BclI TGATCA 1 cut(s) 687
BcoDI GTCTC 2 cut(s) 572, 582
BcuI ACTAGT 2 cut(s) 368, 814
BfaI CTAG 8 cut(s) 81, 369, 584, 605, 815, 833, 938, 1022
BfmI CTRYAG 4 cut(s) 178, 199, 212, 863
BfrI CTTAAG 1 cut(s) 982
BfuAI ACCTGC 1 cut(s) 904
BisI GCNGC 5 cut(s) 181, 215, 218, 221, 224
BlsI GCNGC 5 cut(s) 182, 216, 219, 222, 225
Bme1390I CCNGG 1 cut(s) 76
BmgT120I GGNCC 2 cut(s) 345, 571
BmiI GGNNCC 2 cut(s) 315, 346
BmrFI CCNGG 1 cut(s) 76
BmrI ACTGGG 1 cut(s) 601
BmsI GCATC 4 cut(s) 24, 723, 1030, 1360
BmtI GCTAGC 1 cut(s) 836
BmuI ACTGGG 1 cut(s) 601
BpiI GAAGAC 1 cut(s) 534
BpmI CTGGAG 2 cut(s) 396, 687
Bpu10I CCTNAGC 1 cut(s) 379
BpuEI CTTGAG 1 cut(s) 747
Bsa29I ATCGAT 1 cut(s) 440
BsaBI GATNNNNATC 1 cut(s) 491
BsaJI CCNNGG 1 cut(s) 75
BsaWI WCCGGW 1 cut(s) 1366
Bsc4I CCNNNNNNNGG 5 cut(s) 472, 666, 710, 756, 1022
Bse1I ACTGG 3 cut(s) 105, 596, 704
Bse3DI GCAATG 1 cut(s) 1016
Bse8I GATNNNNATC 1 cut(s) 491
BseAI TCCGGA 1 cut(s) 1366
BseBI CCWGG 1 cut(s) 76
BseCI ATCGAT 1 cut(s) 440
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 3 cut(s) 301, 1045, 1375
BseJI GATNNNNATC 1 cut(s) 491
BseLI CCNNNNNNNGG 5 cut(s) 472, 666, 710, 756, 1022
BseMI GCAATG 1 cut(s) 1016
BseMII CTCAG 3 cut(s) 393, 1188, 1271
BseNI ACTGG 3 cut(s) 105, 596, 704
BseRI GAGGAG 2 cut(s) 523, 526
BseXI GCAGC 5 cut(s) 192, 226, 229, 232, 235
BseYI CCCAGC 1 cut(s) 697
BshFI GGCC 3 cut(s) 347, 572, 1056
BshVI ATCGAT 1 cut(s) 440
BsiSI CCGG 1 cut(s) 1367
BslFI GGGAC 2 cut(s) 772, 875
BslI CCNNNNNNNGG 5 cut(s) 472, 666, 710, 756, 1022
BsmAI GTCTC 2 cut(s) 572, 582
BsmFI GGGAC 2 cut(s) 772, 875
BsmI GAATGC 1 cut(s) 1373
BsnI GGCC 3 cut(s) 347, 572, 1056
Bsp13I TCCGGA 1 cut(s) 1366
Bsp143I GATC 8 cut(s) 117, 313, 549, 672, 687, 772, 934, 970
BspACI CCGC 1 cut(s) 416
BspANI GGCC 3 cut(s) 347, 572, 1056
BspCNI CTCAG 3 cut(s) 392, 1189, 1272
BspDI ATCGAT 1 cut(s) 440
BspEI TCCGGA 1 cut(s) 1366
BspHI TCATGA 1 cut(s) 931
BspLI GGNNCC 2 cut(s) 315, 346
BspMAI CTGCAG 2 cut(s) 182, 216
BspMI ACCTGC 1 cut(s) 904
BspOI GCTAGC 1 cut(s) 836
BspPI GGATC 5 cut(s) 125, 308, 321, 667, 780
BspTI CTTAAG 1 cut(s) 982
BsrDI GCAATG 1 cut(s) 1016
BsrI ACTGG 3 cut(s) 105, 596, 704
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 8 cut(s) 117, 313, 549, 672, 687, 772, 934, 970
Bst2UI CCWGG 1 cut(s) 76
Bst4CI ACNGT 3 cut(s) 285, 656, 1363
Bst6I CTCTTC 2 cut(s) 744, 1188
BstAFI CTTAAG 1 cut(s) 982
BstC8I GCNNGC 1 cut(s) 834
BstDEI CTNAG 4 cut(s) 379, 628, 1197, 1280
BstENI CCTNNNNNAGG 1 cut(s) 470
BstF5I GGATG 3 cut(s) 301, 1045, 1375
BstKTI GATC 8 cut(s) 120, 316, 552, 675, 690, 775, 937, 973
BstMAI GTCTC 2 cut(s) 572, 582
BstMBI GATC 8 cut(s) 117, 313, 549, 672, 687, 772, 934, 970
BstMWI GCNNNNNNNGC 4 cut(s) 220, 223, 272, 413
BstNI CCWGG 1 cut(s) 76
BstNSI RCATGY 1 cut(s) 1270
BstSCI CCNGG 1 cut(s) 74
BstSFI CTRYAG 4 cut(s) 178, 199, 212, 863
BstV1I GCAGC 5 cut(s) 192, 226, 229, 232, 235
BstV2I GAAGAC 1 cut(s) 534
BstX2I RGATCY 3 cut(s) 117, 313, 672
BstYI RGATCY 3 cut(s) 117, 313, 672
Bsu15I ATCGAT 1 cut(s) 440
BsuRI GGCC 3 cut(s) 347, 572, 1056
BsuTUI ATCGAT 1 cut(s) 440
BtsCI GGATG 3 cut(s) 301, 1045, 1375
BtsI GCAGTG 2 cut(s) 792, 973
BtsIMutI CAGTG 3 cut(s) 792, 973, 1326
BveI ACCTGC 1 cut(s) 904
Cac8I GCNNGC 1 cut(s) 834
CaiI CAGNNNCTG 1 cut(s) 710
CciI TCATGA 1 cut(s) 931
Cfr13I GGNCC 2 cut(s) 345, 571
ClaI ATCGAT 1 cut(s) 440
Csp6I GTAC 2 cut(s) 366, 482
CspCI CAANNNNNGTGG 2 cut(s) 1375, 1410
CviAII CATG 6 cut(s) 188, 505, 643, 802, 932, 1267
CviQI GTAC 2 cut(s) 366, 482
DdeI CTNAG 4 cut(s) 379, 628, 1197, 1280
DpnI GATC 8 cut(s) 119, 315, 551, 674, 689, 774, 936, 972
DpnII GATC 8 cut(s) 117, 313, 549, 672, 687, 772, 934, 970
Eam1104I CTCTTC 2 cut(s) 744, 1188
EarI CTCTTC 2 cut(s) 744, 1188
Eco57I CTGAAG 1 cut(s) 711
EcoNI CCTNNNNNAGG 1 cut(s) 470
EcoRI GAATTC 1 cut(s) 1234
EcoRII CCWGG 1 cut(s) 74
EcoT22I ATGCAT 1 cut(s) 1375
FaeI CATG 6 cut(s) 191, 508, 646, 805, 935, 1270
FaqI GGGAC 2 cut(s) 772, 875
FatI CATG 6 cut(s) 187, 504, 642, 801, 931, 1266
FauI CCCGC 1 cut(s) 409
FauNDI CATATG 1 cut(s) 39
FbaI TGATCA 1 cut(s) 687
FblI GTMKAC 1 cut(s) 1355
Fnu4HI GCNGC 5 cut(s) 181, 215, 218, 221, 224
FokI GGATG 3 cut(s) 308, 1052, 1382
Fsp4HI GCNGC 5 cut(s) 181, 215, 218, 221, 224
FspBI CTAG 8 cut(s) 81, 369, 584, 605, 815, 833, 938, 1022
GluI GCNGC 5 cut(s) 181, 215, 218, 221, 224
GsaI CCCAGC 1 cut(s) 701
GsuI CTGGAG 2 cut(s) 396, 687
HaeIII GGCC 3 cut(s) 347, 572, 1056
HapII CCGG 1 cut(s) 1367
Hin1II CATG 6 cut(s) 191, 508, 646, 805, 935, 1270
HincII GTYRAC 3 cut(s) 781, 1084, 1356
HindII GTYRAC 3 cut(s) 781, 1084, 1356
HindIII AAGCTT 1 cut(s) 405
HinfI GANTC 4 cut(s) 5, 385, 580, 760
HpaI GTTAAC 1 cut(s) 781
HpaII CCGG 1 cut(s) 1367
HphI GGTGA 1 cut(s) 1120
Hpy166II GTNNAC 6 cut(s) 240, 619, 781, 812, 1084, 1356
Hpy188I TCNGA 2 cut(s) 1198, 1281
Hpy188III TCNNGA 5 cut(s) 115, 466, 858, 932, 1367
Hpy8I GTNNAC 6 cut(s) 240, 619, 781, 812, 1084, 1356
HpyAV CCTTC 1 cut(s) 511
HpyCH4III ACNGT 3 cut(s) 285, 656, 1363
HpyCH4IV ACGT 1 cut(s) 1392
HpyF10VI GCNNNNNNNGC 4 cut(s) 220, 223, 272, 413
HpyF3I CTNAG 4 cut(s) 379, 628, 1197, 1280
HpySE526I ACGT 1 cut(s) 1392
Hsp92II CATG 6 cut(s) 191, 508, 646, 805, 935, 1270
Kpn2I TCCGGA 1 cut(s) 1366
Ksp22I TGATCA 1 cut(s) 687
KspAI GTTAAC 1 cut(s) 781
Kzo9I GATC 8 cut(s) 117, 313, 549, 672, 687, 772, 934, 970
LmnI GCTCC 1 cut(s) 706
Lsp1109I GCAGC 5 cut(s) 192, 226, 229, 232, 235
LweI GCATC 4 cut(s) 24, 723, 1030, 1360
MaeI CTAG 8 cut(s) 81, 369, 584, 605, 815, 833, 938, 1022
MaeII ACGT 1 cut(s) 1392
MalI GATC 8 cut(s) 119, 315, 551, 674, 689, 774, 936, 972
MboI GATC 8 cut(s) 117, 313, 549, 672, 687, 772, 934, 970
MboII GAAGA 4 cut(s) 337, 539, 731, 1175
MfeI CAATTG 1 cut(s) 1044
MflI RGATCY 3 cut(s) 117, 313, 672
MlyI GAGTC 2 cut(s) 574, 754
MmeI TCCRAC 2 cut(s) 525, 1141
Mph1103I ATGCAT 1 cut(s) 1375
MroI TCCGGA 1 cut(s) 1366
MseI TTAA 2 cut(s) 780, 983
MspA1I CMGCKG 2 cut(s) 275, 416
MspCI CTTAAG 1 cut(s) 982
MspI CCGG 1 cut(s) 1367
MspR9I CCNGG 1 cut(s) 76
MunI CAATTG 1 cut(s) 1044
Mva1269I GAATGC 1 cut(s) 1373
MvaI CCWGG 1 cut(s) 76
MwoI GCNNNNNNNGC 4 cut(s) 220, 223, 272, 413
NdeI CATATG 1 cut(s) 39
NdeII GATC 8 cut(s) 117, 313, 549, 672, 687, 772, 934, 970
NheI GCTAGC 1 cut(s) 832
NlaIII CATG 6 cut(s) 191, 508, 646, 805, 935, 1270
NlaIV GGNNCC 2 cut(s) 315, 346
NsiI ATGCAT 1 cut(s) 1375
NspI RCATGY 1 cut(s) 1270
PagI TCATGA 1 cut(s) 931
PaqCI CACCTGC 1 cut(s) 904
PctI GAATGC 1 cut(s) 1373
PfeI GAWTC 2 cut(s) 5, 385
PflMI CCANNNNNTGG 1 cut(s) 710
PkrI GCNGC 5 cut(s) 182, 216, 219, 222, 225
PleI GAGTC 2 cut(s) 574, 754
PpsI GAGTC 2 cut(s) 574, 754
Psp6I CCWGG 1 cut(s) 74
PspFI CCCAGC 1 cut(s) 697
PspGI CCWGG 1 cut(s) 74
PspN4I GGNNCC 2 cut(s) 315, 346
PspPI GGNCC 2 cut(s) 345, 571
PstI CTGCAG 2 cut(s) 182, 216
PstNI CAGNNNCTG 1 cut(s) 710
PsuI RGATCY 3 cut(s) 117, 313, 672
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 2 cut(s) 367, 483
RsaNI GTAC 2 cut(s) 366, 482
SalI GTCGAC 1 cut(s) 1354
SaqAI TTAA 2 cut(s) 780, 983
SatI GCNGC 5 cut(s) 181, 215, 218, 221, 224
Sau3AI GATC 8 cut(s) 117, 313, 549, 672, 687, 772, 934, 970
Sau96I GGNCC 2 cut(s) 345, 571
SchI GAGTC 2 cut(s) 574, 754
ScrFI CCNGG 1 cut(s) 76
SfaNI GCATC 4 cut(s) 24, 723, 1030, 1360
SfcI CTRYAG 4 cut(s) 178, 199, 212, 863
SmlI CTYRAG 2 cut(s) 762, 982
SmoI CTYRAG 2 cut(s) 762, 982
SpeI ACTAGT 2 cut(s) 368, 814
SsiI CCGC 1 cut(s) 416
SspI AATATT 1 cut(s) 915
SspMI CTAG 8 cut(s) 81, 369, 584, 605, 815, 833, 938, 1022
StyD4I CCNGG 1 cut(s) 74
TaaI ACNGT 3 cut(s) 285, 656, 1363
TaiI ACGT 1 cut(s) 1395
TaqI TCGA 5 cut(s) 244, 440, 1232, 1355, 1407
TatI WGTACW 1 cut(s) 481
TfiI GAWTC 2 cut(s) 5, 385
Tru1I TTAA 2 cut(s) 780, 983
Tru9I TTAA 2 cut(s) 780, 983
TscAI CASTG 3 cut(s) 799, 973, 1326
TseI GCWGC 5 cut(s) 180, 214, 217, 220, 223
TspDTI ATGAA 3 cut(s) 12, 222, 1116
TspGWI ACGGA 1 cut(s) 785
TspRI CASTG 3 cut(s) 799, 973, 1326
Van91I CCANNNNNTGG 1 cut(s) 710
Vha464I CTTAAG 1 cut(s) 982
XagI CCTNNNNNAGG 1 cut(s) 470
XapI RAATTY 3 cut(s) 127, 145, 1234
XceI RCATGY 1 cut(s) 1270
XmiI GTMKAC 1 cut(s) 1355
XspI CTAG 8 cut(s) 81, 369, 584, 605, 815, 833, 938, 1022
Zsp2I ATGCAT 1 cut(s) 1375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.