Rmu_sc0004458.1_g000002

Tryptophan/tyrosine permease family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004458.1
OG0013714
Physical Location & Seq
Forward (+)
5703 .. 8356
2654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004458.1_g000002.1.cds

Sequence Viewer

Length: 1674 bp
atggattcaaattgcatcacttcatctacctccttgcatatgagaagccacttcaacccaaagacaaatcactcctgggctagactacatcatcaaaatagcaccagtaatttcaggatctatcatgcttgttcctatggccaacaactgcagcagcagcagcaaacttcatcgtttactcgaaatggttttgtcaaaaaagcaaagacaggtgttatacggttgagcttggatgtaaagcccatcaaggatcccaataagaagaaaggaactattgcaggggccgttgctttgataattggtactagtataggctcagggattcttgcactcccagagaaagcttctccagcgggatttattccaagttcaatatcgatagtaatatgttggggatttctcctgattgaggctcttttactgattgaaatcaatgtaagcatgaggaggaggaagggaaaggaagacaaagagaatgagttggagatcatttcaattaggactatggcccaagagactctaggagactggggtggaactctagcctctctggtttacattttcttaggttatacttccatgatttcttacagttccaaatctggggagatcctttttcacttgatcaatctcccagctccagtttctggcatctttttcacttcagttttcactcttctcatttccatcggtgggactcaagctacggatcaagttaaccaactgctcactgcttccatgatagcaatagaagtgctagcagttgtgtttggaggttggtcaggactacagggaagtggagattggggaaaagtcccacctgcaatacctgtcataatattttctttggtgtatcatgatctagcacctgttctttgtgcatatttgggcagtgatctcaaacgcttaaggatttcggttgttcttggtagtcttgttccattgctaggactacttgtttgggatgcaattgctcttggcctatctgcccaagccgaccaaatggttgagtctccctttgcagttctttgtgcatatttgggcagtgatctcaaacgcttaaggatttcggtggttcttggtagtcttgttccattgctaggactacttgtttgggatgcaattgctcttggcctatctgcccaagccgaccaaatggttgaccctgttgaattgcttatgagggtgaaatggagtggggtttcatatatggtagaagccttttctctccttgcagttggaacatcactaattggcactcttcttggcttctctgagtttttcaaagaacaactaaatagcctctcatcgaattctcccctcacacaaacacagaaaccaaacatgccctttggtctgaggaaatggtgggcagggaataaagttagcttcgcatcagtggcattggttgttgttccatctctttttgtgtcgactactgttccggatgcattctctactgccacagacgttgctggagggtattgtatgacaatgctatatggagttcttccaccagcaatggcttgggcaatgcataataaagaaagagacaatgcttctgatcaaaagactttatcgagagcgaggccagtactggtggcggtaggactccttgcttgcggaattgtggcagagcaaatccttcaagacatcctcatatttcaattctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trp_Tyr_perm

Protein Analysis

557

Amino Acids

60.17

Weight (kDa)

8.7

Isoelectric Point (pI)

38.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013714)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g19650 FvH4_7g19650
malus_domestica MD07G1175000.v1.1
prunus_persica Prupe.2G214200_v2.0.a1 Prupe.2G214200_v2.0.a1 Prupe.2G214200_v2.0.a1
pyrus_communis pycom07g16940
rosa_chinensis RchiOBHm_Chr1g0363461
rosa_laevigata RLG00000027564
rosa_multiflora Rmu_sc0004458.1_g000002
rosa_roxburghii Rroxscaffold_4G00293160
rosa_rugosa Rorug01G0306900 Rorug01G0307000
rosa_samantha Rh1AG316100 Rh1BG279400 Rh1CG295700 Rh1DG310500
rosa_wichuraiana Rw1G027990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 829
Acc36I ACCTGC 1 cut(s) 829
AccB7I CCANNNNNTGG 1 cut(s) 647
AccI GTMKAC 1 cut(s) 1433
AccIII TCCGGA 1 cut(s) 1444
AciI CCGC 3 cut(s) 353, 1604, 1623
AclWI GGATC 5 cut(s) 125, 245, 258, 604, 717
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 1 cut(s) 1312
AcuI CTGAAG 1 cut(s) 648
AfaI GTAC 2 cut(s) 304, 1596
AfiI CCNNNNNNNGG 6 cut(s) 409, 603, 647, 693, 947, 1100
AflII CTTAAG 2 cut(s) 907, 1060
AgsI TTSAA 9 cut(s) 9, 55, 372, 428, 495, 1172, 1285, 1649, 1667
AhlI ACTAGT 1 cut(s) 305
AjnI CCWGG 1 cut(s) 74
AjuI GAANNNNNNNTTGG 2 cut(s) 787, 819
AluBI AGCT 5 cut(s) 228, 344, 638, 704, 1389
AluI AGCT 5 cut(s) 228, 344, 638, 704, 1389
Alw26I GTCTC 4 cut(s) 509, 519, 1017, 1545
AlwI GGATC 5 cut(s) 125, 245, 258, 604, 717
AlwNI CAGNNNCTG 1 cut(s) 647
Aor13HI TCCGGA 1 cut(s) 1444
AoxI GGCC 6 cut(s) 139, 282, 507, 979, 1132, 1589
ApeKI GCWGC 4 cut(s) 151, 154, 157, 160
ApoI RAATTY 1 cut(s) 1312
ArsI GACNNNNNNTTYG 4 cut(s) 942, 974, 1095, 1127
AspS9I GGNCC 2 cut(s) 282, 508
AsuHPI GGTGA 1 cut(s) 1198
AsuNHI GCTAGC 1 cut(s) 757
BalI TGGCCA 1 cut(s) 141
BamHI GGATCC 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 471
BbvI GCAGC 4 cut(s) 163, 166, 169, 172
BccI CCATC 3 cut(s) 251, 695, 1426
BceAI ACGGC 1 cut(s) 269
BciT130I CCWGG 1 cut(s) 76
BclI TGATCA 2 cut(s) 624, 1564
BcoDI GTCTC 4 cut(s) 509, 519, 1017, 1545
BcuI ACTAGT 1 cut(s) 305
BfaI CTAG 9 cut(s) 81, 306, 521, 542, 758, 863, 947, 1100, 1672
BfmI CTRYAG 2 cut(s) 149, 788
BfrI CTTAAG 2 cut(s) 907, 1060
BfuAI ACCTGC 1 cut(s) 829
BisI GCNGC 4 cut(s) 152, 155, 158, 161
BlsI GCNGC 4 cut(s) 153, 156, 159, 162
BmcAI AGTACT 1 cut(s) 1596
Bme1390I CCNGG 1 cut(s) 76
BmgT120I GGNCC 2 cut(s) 282, 508
BmiI GGNNCC 2 cut(s) 252, 283
BmrFI CCNGG 1 cut(s) 76
BmrI ACTGGG 1 cut(s) 538
BmsI GCATC 6 cut(s) 24, 660, 955, 1108, 1403, 1438
BmtI GCTAGC 1 cut(s) 761
BmuI ACTGGG 1 cut(s) 538
BpiI GAAGAC 1 cut(s) 471
BpmI CTGGAG 3 cut(s) 333, 624, 1497
Bpu10I CCTNAGC 1 cut(s) 316
BpuEI CTTGAG 1 cut(s) 684
Bsa29I ATCGAT 1 cut(s) 377
BsaBI GATNNNNATC 1 cut(s) 428
BsaJI CCNNGG 1 cut(s) 75
BsaWI WCCGGW 1 cut(s) 1444
Bsc4I CCNNNNNNNGG 6 cut(s) 409, 603, 647, 693, 947, 1100
Bse1I ACTGG 5 cut(s) 105, 533, 641, 1592, 1602
Bse3DI GCAATG 4 cut(s) 941, 1094, 1527, 1539
Bse8I GATNNNNATC 1 cut(s) 428
BseAI TCCGGA 1 cut(s) 1444
BseBI CCWGG 1 cut(s) 76
BseCI ATCGAT 1 cut(s) 377
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 5 cut(s) 238, 970, 1123, 1453, 1653
BseJI GATNNNNATC 1 cut(s) 428
BseLI CCNNNNNNNGG 6 cut(s) 409, 603, 647, 693, 947, 1100
BseMI GCAATG 4 cut(s) 941, 1094, 1527, 1539
BseMII CTCAG 3 cut(s) 330, 1266, 1349
BseNI ACTGG 5 cut(s) 105, 533, 641, 1592, 1602
BseRI GAGGAG 2 cut(s) 460, 463
BseXI GCAGC 4 cut(s) 163, 166, 169, 172
BseYI CCCAGC 1 cut(s) 634
BshFI GGCC 6 cut(s) 141, 284, 509, 981, 1134, 1591
BshVI ATCGAT 1 cut(s) 377
BsiSI CCGG 1 cut(s) 1445
BslFI GGGAC 2 cut(s) 709, 800
BslI CCNNNNNNNGG 6 cut(s) 409, 603, 647, 693, 947, 1100
BsmAI GTCTC 4 cut(s) 509, 519, 1017, 1545
BsmFI GGGAC 2 cut(s) 709, 800
BsmI GAATGC 1 cut(s) 1451
BsnI GGCC 6 cut(s) 141, 284, 509, 981, 1134, 1591
Bsp13I TCCGGA 1 cut(s) 1444
BspACI CCGC 3 cut(s) 353, 1604, 1623
BspANI GGCC 6 cut(s) 141, 284, 509, 981, 1134, 1591
BspCNI CTCAG 3 cut(s) 329, 1267, 1350
BspDI ATCGAT 1 cut(s) 377
BspEI TCCGGA 1 cut(s) 1444
BspHI TCATGA 1 cut(s) 856
BspLI GGNNCC 2 cut(s) 252, 283
BspMAI CTGCAG 1 cut(s) 153
BspMI ACCTGC 1 cut(s) 829
BspOI GCTAGC 1 cut(s) 761
BspPI GGATC 5 cut(s) 125, 245, 258, 604, 717
BspTI CTTAAG 2 cut(s) 907, 1060
BsrDI GCAATG 4 cut(s) 941, 1094, 1527, 1539
BsrI ACTGG 5 cut(s) 105, 533, 641, 1592, 1602
BssECI CCNNGG 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 76
Bst4CI ACNGT 3 cut(s) 222, 593, 1441
Bst6I CTCTTC 2 cut(s) 681, 1266
BstAFI CTTAAG 2 cut(s) 907, 1060
BstC8I GCNNGC 2 cut(s) 759, 1621
BstDEI CTNAG 4 cut(s) 316, 565, 1275, 1358
BstENI CCTNNNNNAGG 1 cut(s) 407
BstF5I GGATG 5 cut(s) 238, 970, 1123, 1453, 1653
BstMAI GTCTC 4 cut(s) 509, 519, 1017, 1545
BstMWI GCNNNNNNNGC 4 cut(s) 157, 160, 350, 1400
BstNI CCWGG 1 cut(s) 76
BstNSI RCATGY 1 cut(s) 1348
BstSCI CCNGG 1 cut(s) 74
BstSFI CTRYAG 2 cut(s) 149, 788
BstV1I GCAGC 4 cut(s) 163, 166, 169, 172
BstV2I GAAGAC 1 cut(s) 471
BstX2I RGATCY 3 cut(s) 117, 250, 609
BstYI RGATCY 3 cut(s) 117, 250, 609
Bsu15I ATCGAT 1 cut(s) 377
BsuRI GGCC 6 cut(s) 141, 284, 509, 981, 1134, 1591
BsuTUI ATCGAT 1 cut(s) 377
BtsCI GGATG 5 cut(s) 238, 970, 1123, 1453, 1653
BtsI GCAGTG 3 cut(s) 729, 898, 1051
BtsIMutI CAGTG 4 cut(s) 729, 898, 1051, 1404
BveI ACCTGC 1 cut(s) 829
Cac8I GCNNGC 2 cut(s) 759, 1621
CaiI CAGNNNCTG 1 cut(s) 647
CciI TCATGA 1 cut(s) 856
Cfr13I GGNCC 2 cut(s) 282, 508
ClaI ATCGAT 1 cut(s) 377
Csp6I GTAC 2 cut(s) 303, 1595
CspCI CAANNNNNGTGG 2 cut(s) 1453, 1488
CviAII CATG 6 cut(s) 125, 442, 580, 739, 857, 1345
CviQI GTAC 2 cut(s) 303, 1595
DdeI CTNAG 4 cut(s) 316, 565, 1275, 1358
EaeI YGGCCR 1 cut(s) 139
Eam1104I CTCTTC 2 cut(s) 681, 1266
EarI CTCTTC 2 cut(s) 681, 1266
Eco57I CTGAAG 1 cut(s) 648
EcoNI CCTNNNNNAGG 1 cut(s) 407
EcoRI GAATTC 1 cut(s) 1312
EcoRII CCWGG 1 cut(s) 74
EcoT22I ATGCAT 2 cut(s) 1453, 1539
FaeI CATG 6 cut(s) 128, 445, 583, 742, 860, 1348
FaqI GGGAC 2 cut(s) 709, 800
FatI CATG 6 cut(s) 124, 441, 579, 738, 856, 1344
FauI CCCGC 1 cut(s) 346
FauNDI CATATG 1 cut(s) 39
FbaI TGATCA 2 cut(s) 624, 1564
FblI GTMKAC 1 cut(s) 1433
Fnu4HI GCNGC 4 cut(s) 152, 155, 158, 161
FokI GGATG 5 cut(s) 245, 977, 1130, 1460, 1640
Fsp4HI GCNGC 4 cut(s) 152, 155, 158, 161
FspBI CTAG 9 cut(s) 81, 306, 521, 542, 758, 863, 947, 1100, 1672
GluI GCNGC 4 cut(s) 152, 155, 158, 161
GsaI CCCAGC 1 cut(s) 638
GsuI CTGGAG 3 cut(s) 333, 624, 1497
HaeIII GGCC 6 cut(s) 141, 284, 509, 981, 1134, 1591
HapII CCGG 1 cut(s) 1445
Hin1II CATG 6 cut(s) 128, 445, 583, 742, 860, 1348
HincII GTYRAC 3 cut(s) 718, 1162, 1434
HindII GTYRAC 3 cut(s) 718, 1162, 1434
HindIII AAGCTT 1 cut(s) 342
HinfI GANTC 6 cut(s) 5, 322, 517, 697, 1010, 1611
HpaI GTTAAC 1 cut(s) 718
HpaII CCGG 1 cut(s) 1445
HphI GGTGA 1 cut(s) 1198
Hpy166II GTNNAC 5 cut(s) 177, 556, 718, 1162, 1434
Hpy188I TCNGA 3 cut(s) 1276, 1359, 1564
Hpy188III TCNNGA 7 cut(s) 115, 403, 783, 857, 1445, 1581, 1649
Hpy8I GTNNAC 5 cut(s) 177, 556, 718, 1162, 1434
HpyAV CCTTC 2 cut(s) 448, 1655
HpyCH4III ACNGT 3 cut(s) 222, 593, 1441
HpyCH4IV ACGT 1 cut(s) 1470
HpyF10VI GCNNNNNNNGC 4 cut(s) 157, 160, 350, 1400
HpyF3I CTNAG 4 cut(s) 316, 565, 1275, 1358
HpySE526I ACGT 1 cut(s) 1470
Hsp92II CATG 6 cut(s) 128, 445, 583, 742, 860, 1348
Kpn2I TCCGGA 1 cut(s) 1444
Ksp22I TGATCA 2 cut(s) 624, 1564
KspAI GTTAAC 1 cut(s) 718
LmnI GCTCC 1 cut(s) 643
Lsp1109I GCAGC 4 cut(s) 163, 166, 169, 172
LweI GCATC 6 cut(s) 24, 660, 955, 1108, 1403, 1438
MaeI CTAG 9 cut(s) 81, 306, 521, 542, 758, 863, 947, 1100, 1672
MaeII ACGT 1 cut(s) 1470
MboII GAAGA 5 cut(s) 274, 476, 668, 1253, 1502
MfeI CAATTG 2 cut(s) 969, 1122
MflI RGATCY 3 cut(s) 117, 250, 609
MlsI TGGCCA 1 cut(s) 141
MluNI TGGCCA 1 cut(s) 141
MlyI GAGTC 4 cut(s) 511, 691, 1019, 1605
MmeI TCCRAC 2 cut(s) 462, 1219
Mox20I TGGCCA 1 cut(s) 141
Mph1103I ATGCAT 2 cut(s) 1453, 1539
MroI TCCGGA 1 cut(s) 1444
MscI TGGCCA 1 cut(s) 141
MseI TTAA 3 cut(s) 717, 908, 1061
Msp20I TGGCCA 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 353
MspCI CTTAAG 2 cut(s) 907, 1060
MspI CCGG 1 cut(s) 1445
MspR9I CCNGG 1 cut(s) 76
MunI CAATTG 2 cut(s) 969, 1122
Mva1269I GAATGC 1 cut(s) 1451
MvaI CCWGG 1 cut(s) 76
MwoI GCNNNNNNNGC 4 cut(s) 157, 160, 350, 1400
NdeI CATATG 1 cut(s) 39
NheI GCTAGC 1 cut(s) 757
NlaIII CATG 6 cut(s) 128, 445, 583, 742, 860, 1348
NlaIV GGNNCC 2 cut(s) 252, 283
NsiI ATGCAT 2 cut(s) 1453, 1539
NspI RCATGY 1 cut(s) 1348
PagI TCATGA 1 cut(s) 856
PaqCI CACCTGC 1 cut(s) 829
PctI GAATGC 1 cut(s) 1451
PfeI GAWTC 2 cut(s) 5, 322
PflMI CCANNNNNTGG 1 cut(s) 647
PkrI GCNGC 4 cut(s) 153, 156, 159, 162
PleI GAGTC 4 cut(s) 511, 691, 1018, 1605
PpsI GAGTC 4 cut(s) 511, 691, 1018, 1605
Psp6I CCWGG 1 cut(s) 74
PspFI CCCAGC 1 cut(s) 634
PspGI CCWGG 1 cut(s) 74
PspN4I GGNNCC 2 cut(s) 252, 283
PspPI GGNCC 2 cut(s) 282, 508
PstI CTGCAG 1 cut(s) 153
PstNI CAGNNNCTG 1 cut(s) 647
PsuI RGATCY 3 cut(s) 117, 250, 609
RsaI GTAC 2 cut(s) 304, 1596
RsaNI GTAC 2 cut(s) 303, 1595
SalI GTCGAC 1 cut(s) 1432
SaqAI TTAA 3 cut(s) 717, 908, 1061
SatI GCNGC 4 cut(s) 152, 155, 158, 161
Sau96I GGNCC 2 cut(s) 282, 508
ScaI AGTACT 1 cut(s) 1596
SchI GAGTC 4 cut(s) 511, 691, 1019, 1605
ScrFI CCNGG 1 cut(s) 76
SfaNI GCATC 6 cut(s) 24, 660, 955, 1108, 1403, 1438
SfcI CTRYAG 2 cut(s) 149, 788
SmlI CTYRAG 3 cut(s) 699, 907, 1060
SmoI CTYRAG 3 cut(s) 699, 907, 1060
SpeI ACTAGT 1 cut(s) 305
SsiI CCGC 3 cut(s) 353, 1604, 1623
SspI AATATT 1 cut(s) 840
SspMI CTAG 9 cut(s) 81, 306, 521, 542, 758, 863, 947, 1100, 1672
StyD4I CCNGG 1 cut(s) 74
TaaI ACNGT 3 cut(s) 222, 593, 1441
TaiI ACGT 1 cut(s) 1473
TaqI TCGA 5 cut(s) 181, 377, 1310, 1433, 1580
TatI WGTACW 1 cut(s) 1594
TfiI GAWTC 2 cut(s) 5, 322
Tru1I TTAA 3 cut(s) 717, 908, 1061
Tru9I TTAA 3 cut(s) 717, 908, 1061
TscAI CASTG 4 cut(s) 736, 898, 1051, 1404
TseI GCWGC 4 cut(s) 151, 154, 157, 160
TspDTI ATGAA 3 cut(s) 12, 159, 1194
TspGWI ACGGA 1 cut(s) 722
TspRI CASTG 4 cut(s) 736, 898, 1051, 1404
Van91I CCANNNNNTGG 1 cut(s) 647
Vha464I CTTAAG 2 cut(s) 907, 1060
XagI CCTNNNNNAGG 1 cut(s) 407
XapI RAATTY 1 cut(s) 1312
XceI RCATGY 1 cut(s) 1348
XcmI CCANNNNNNNNNTGG 1 cut(s) 1524
XmiI GTMKAC 1 cut(s) 1433
XspI CTAG 9 cut(s) 81, 306, 521, 542, 758, 863, 947, 1100, 1672
ZrmI AGTACT 1 cut(s) 1596
Zsp2I ATGCAT 2 cut(s) 1453, 1539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.