Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0013714

Physical Location & Seq

Genomic Coordinates Reverse (-)

42390848 .. 42391402

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0307000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGTCCTTCCTCATCTTGGGAACCTATCAAACTTGCTCAATCTTGATCTCTCAGCATATTCAGATATGTGGGTTTCAGATTTGAATGGGCTTTTTGGGCTCTCTTCCTTGCAATACCTCAATTTAGAAATGGTGAACCTTAGCAAAGCAACACCTCATTGGCTAGATGTTGTTAATATGATTCCTTCGCTCCTAGAGCTACACTTGTTTGGCTATGAACTTCATGACCTCCCTCAAACTCTTCACCATGTGAATTTTACGTCACTTTTGCTCATTGACCTCTCATCCAATGAGTTCCATTCTTCATTACCCGAATGCTTATTCAATATAAGTACCCTTGTGACAGTAGATTTCTCTGAATCTGAATTTACTGGCTCCATTCCGGAAAGTGCATGGAAACATAACCATTGCAGCCTGCAAACTTTACACCTGTCATATGATTCTCTAAGTGGGGAAATAAAGGAACTTGTCGAGTCTTTTTCCAGATGCAGTAATGGTAGCTTAAAAGTACGTGTTGGATTTCACTTTAAACAATTTCAATGGGCCACTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Trp_Tyr_perm

Protein Analysis

184

Amino Acids

20.77

Weight (kDa)

5.15

Isoelectric Point (pI)

30.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013714)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g19650 FvH4_7g19650
malus_domestica	MD07G1175000.v1.1
prunus_persica	Prupe.2G214200_v2.0.a1 Prupe.2G214200_v2.0.a1 Prupe.2G214200_v2.0.a1
pyrus_communis	pycom07g16940
rosa_chinensis	RchiOBHm_Chr1g0363461
rosa_laevigata	RLG00000027564
rosa_multiflora	Rmu_sc0004458.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293160
rosa_rugosa	Rorug01G0306900 Rorug01G0307000
rosa_samantha	Rh1AG316100 Rh1BG279400 Rh1CG295700 Rh1DG310500
rosa_wichuraiana	Rw1G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	382
AcsI	RAATTY	2 cut(s)	253, 365
AdeI	CACNNNGTG	1 cut(s)	250
AfaI	GTAC	2 cut(s)	334, 510
AfiI	CCNNNNNNNGG	1 cut(s)	17
AflIII	ACRYGT	1 cut(s)	511
AgsI	TTSAA	3 cut(s)	85, 325, 539
AluBI	AGCT	2 cut(s)	199, 501
AluI	AGCT	2 cut(s)	199, 501
Aor13HI	TCCGGA	1 cut(s)	382
AoxI	GGCC	1 cut(s)	543
ApeKI	GCWGC	1 cut(s)	411
ApoI	RAATTY	2 cut(s)	253, 365
AspS9I	GGNCC	2 cut(s)	4, 543
AsuHPI	GGTGA	2 cut(s)	145, 236
AvaII	GGWCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	423
BfaI	CTAG	2 cut(s)	164, 194
BisI	GCNGC	1 cut(s)	412
BlsI	GCNGC	1 cut(s)	413
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 543
BmiI	GGNNCC	2 cut(s)	23, 376
BmsI	GCATC	1 cut(s)	476
Bpu10I	CCTNAGC	1 cut(s)	140
BsaAI	YACGTR	1 cut(s)	512
BsaWI	WCCGGW	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse1I	ACTGG	1 cut(s)	376
Bse3DI	GCAATG	1 cut(s)	406
BseAI	TCCGGA	1 cut(s)	382
BseGI	GGATG	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseMI	GCAATG	1 cut(s)	406
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	376
BseXI	GCAGC	1 cut(s)	423
BshFI	GGCC	1 cut(s)	545
BsiSI	CCGG	1 cut(s)	383
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmI	GAATGC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	545
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp13I	TCCGGA	1 cut(s)	382
Bsp143I	GATC	1 cut(s)	46
BspANI	GGCC	1 cut(s)	545
BspCNI	CTCAG	1 cut(s)	65
BspEI	TCCGGA	1 cut(s)	382
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	2 cut(s)	23, 376
BsrDI	GCAATG	1 cut(s)	406
BsrI	ACTGG	1 cut(s)	376
BssMI	GATC	1 cut(s)	46
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	2 cut(s)	109, 246
BstBAI	YACGTR	1 cut(s)	512
BstC8I	GCNNGC	1 cut(s)	416
BstDEI	CTNAG	3 cut(s)	52, 140, 446
BstF5I	GGATG	1 cut(s)	284
BstKTI	GATC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	46
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 196
BstV1I	GCAGC	1 cut(s)	423
BsuRI	GGCC	1 cut(s)	545
BtsCI	GGATG	1 cut(s)	284
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	1 cut(s)	546
Cac8I	GCNNGC	1 cut(s)	416
CciI	TCATGA	1 cut(s)	223
Cfr13I	GGNCC	2 cut(s)	4, 543
Csp6I	GTAC	2 cut(s)	333, 509
CviAII	CATG	3 cut(s)	224, 248, 393
CviJI	RGCY	9 cut(s)	91, 100, 163, 199, 213, 375, 414, 501, 545
CviKI_1	RGCY	9 cut(s)	91, 100, 163, 199, 213, 375, 414, 501, 545
CviQI	GTAC	2 cut(s)	333, 509
DdeI	CTNAG	3 cut(s)	52, 140, 446
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
DraI	TTTAAA	1 cut(s)	529
DraIII	CACNNNGTG	1 cut(s)	250
Eam1104I	CTCTTC	2 cut(s)	109, 246
EarI	CTCTTC	2 cut(s)	109, 246
Eco24I	GRGCYC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	4
EcoT38I	GRGCYC	1 cut(s)	102
FaeI	CATG	3 cut(s)	227, 251, 396
FatI	CATG	3 cut(s)	223, 247, 392
FauNDI	CATATG	1 cut(s)	436
Fnu4HI	GCNGC	1 cut(s)	412
FokI	GGATG	1 cut(s)	271
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	412
FspBI	CTAG	2 cut(s)	164, 194
GluI	GCNGC	1 cut(s)	412
HaeIII	GGCC	1 cut(s)	545
HapII	CCGG	1 cut(s)	383
Hin1II	CATG	3 cut(s)	227, 251, 396
HinfI	GANTC	4 cut(s)	181, 359, 440, 473
HpaII	CCGG	1 cut(s)	383
HphI	GGTGA	2 cut(s)	145, 236
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	4 cut(s)	64, 79, 358, 364
Hpy188III	TCNNGA	4 cut(s)	44, 224, 383, 483
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	2 cut(s)	17, 195
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	2 cut(s)	260, 511
HpyCH4V	TGCA	5 cut(s)	112, 392, 411, 418, 489
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 196
HpyF3I	CTNAG	3 cut(s)	52, 140, 446
HpySE526I	ACGT	2 cut(s)	260, 511
Hsp92II	CATG	3 cut(s)	227, 251, 396
Kpn2I	TCCGGA	1 cut(s)	382
Kzo9I	GATC	1 cut(s)	46
LmnI	GCTCC	2 cut(s)	195, 380
LpnPI	CCDG	5 cut(s)	357, 396, 428, 443, 496
Lsp1109I	GCAGC	1 cut(s)	423
LweI	GCATC	1 cut(s)	476
MaeI	CTAG	2 cut(s)	164, 194
MaeII	ACGT	2 cut(s)	260, 511
MaeIII	GTNAC	2 cut(s)	261, 340
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	3 cut(s)	96, 233, 294
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	4 cut(s)	121, 253, 365, 533
MlyI	GAGTC	1 cut(s)	482
MmeI	TCCRAC	1 cut(s)	496
MnlI	CCTC	6 cut(s)	21, 128, 165, 239, 243, 290
MroI	TCCGGA	1 cut(s)	382
MseI	TTAA	3 cut(s)	174, 503, 528
MspI	CCGG	1 cut(s)	383
Mva1269I	GAATGC	1 cut(s)	320
MwoI	GCNNNNNNNGC	2 cut(s)	97, 196
NdeI	CATATG	1 cut(s)	436
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	3 cut(s)	227, 251, 396
NlaIV	GGNNCC	2 cut(s)	23, 376
NmuCI	GTSAC	2 cut(s)	261, 340
PagI	TCATGA	1 cut(s)	223
PctI	GAATGC	1 cut(s)	320
PfeI	GAWTC	3 cut(s)	181, 359, 440
PkrI	GCNGC	1 cut(s)	413
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
Ppu21I	YACGTR	1 cut(s)	512
PspN4I	GGNNCC	2 cut(s)	23, 376
PspPI	GGNCC	2 cut(s)	4, 543
RsaI	GTAC	2 cut(s)	334, 510
RsaNI	GTAC	2 cut(s)	333, 509
SaqAI	TTAA	3 cut(s)	174, 503, 528
SatI	GCNGC	1 cut(s)	412
Sau3AI	GATC	1 cut(s)	46
Sau96I	GGNCC	2 cut(s)	4, 543
SchI	GAGTC	1 cut(s)	482
SduI	GDGCHC	1 cut(s)	102
SfaNI	GCATC	1 cut(s)	476
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	4 cut(s)	121, 253, 365, 533
SspMI	CTAG	2 cut(s)	164, 194
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	2 cut(s)	263, 514
TaqI	TCGA	1 cut(s)	471
TasI	AATT	4 cut(s)	121, 253, 365, 533
TfiI	GAWTC	3 cut(s)	181, 359, 440
Tru1I	TTAA	3 cut(s)	174, 503, 528
Tru9I	TTAA	3 cut(s)	174, 503, 528
TscAI	CASTG	1 cut(s)	553
TseFI	GTSAC	2 cut(s)	261, 340
TseI	GCWGC	1 cut(s)	411
Tsp45I	GTSAC	2 cut(s)	261, 340
TspDTI	ATGAA	3 cut(s)	212, 231, 294
TspRI	CASTG	1 cut(s)	553
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	2 cut(s)	253, 365
XspI	CTAG	2 cut(s)	164, 194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.