Rroxscaffold_4G00293160

Tryptophan/tyrosine permease family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0013714
Physical Location & Seq
Forward (+)
13450396 .. 13453087
2692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00293160.1

Sequence Viewer

Length: 1092 bp
ATGAGGAGGAGGAAGGGAAAGGAAGACGAAGAGAATGAGTTGGAGATCATTTCCATTAGGACTATGGCCCAAGAGACTCTAGGAGACTGGGGTGGAACTCTAGCCTCTCTGGTTTACATTTTCTTAGGTTATACTTCCATGATTTCTTACAGTTCCAAGTCTGGGGAGATCCTTTTTCACTTGATCAATCTCCCAGCTCCAGTTTCTGGCATCTTTTTCACTTCAGTTTTCACTCTTCTCATTTCCATCGGTGGGACTCAAGCTACGGATCAAGTTAACCAACTGCTCACTGCTTCCATGATAGGTTTACTAGTAGCAATAGAGGTGCTAGCAGTTGTGTTTGGAGGTTGGTCAGGACTACGGGGAAGTGGAGATTGGGGAAAAGTCCCATCTGCAATACCTGTCATAATATTTTCTTTGGTGTATCATGATCTAGCACCTGTTCTTTGTGCATATTTGGGCAGTGATCTCAAACGCTTAAGGATTTCGGTGGTTCTTGGTAGTCTTGTTCCATTGCTAGGACTACTTGTTTGGGATGCAATTGCTCTTGGCCTATCTGCCCAAGCTGACCAAATGGTTGACCCTGTTGAATTGCTTATGAGGGTGAAATGGAGTGGGGTTTCATATATGGTAGAAGCCTTTTCTCTCCTTGCAGTTGGAACGTCATTAATTGGCACTCTTCTTGGCTTCTCTGAGTTTTTCAAAGAACAACTAAATAGCCTCTCATCGAATTCTCCCCTCACACAAACACAGAAACCAAACATGCCCTTTGGTCTGAGGAAATGGTGGGCAGGGAATAAAGTTAGCTTCACATCAGTGGCATTGGTTGTTGTTCCATCTCTTTTTGTGTCGACTACTGTTCCGGATGCATTCTCTACTGCCACTGACGTTGCTGGAGGGTATTGTATGACAATGCTATATGGAGTTCTTCCACCAGCAATGGCTTGGGCAATGCATAATAAAGAAAGAGACAATGCTTCTGATCAAAAGACTTTATCGAGAGCGAGGCCAGTACTGGTGGCGGTAGGACTCCTTGCTTGCGGAATTGTGGCAGAGCAAATCCTTCAAGACATCCTCATATTTCAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trp_Tyr_perm

Protein Analysis

363

Amino Acids

39.22

Weight (kDa)

5.47

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trp_Tyr_perm PF03222 18 - 342 5.6e-34 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013714)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g19650 FvH4_7g19650
malus_domestica MD07G1175000.v1.1
prunus_persica Prupe.2G214200_v2.0.a1 Prupe.2G214200_v2.0.a1 Prupe.2G214200_v2.0.a1
pyrus_communis pycom07g16940
rosa_chinensis RchiOBHm_Chr1g0363461
rosa_laevigata RLG00000027564
rosa_multiflora Rmu_sc0004458.1_g000002
rosa_roxburghii Rroxscaffold_4G00293160
rosa_rugosa Rorug01G0306900 Rorug01G0307000
rosa_samantha Rh1AG316100 Rh1BG279400 Rh1CG295700 Rh1DG310500
rosa_wichuraiana Rw1G027990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 206
AccI GTMKAC 1 cut(s) 851
AccIII TCCGGA 1 cut(s) 862
AciI CCGC 2 cut(s) 1022, 1041
AclWI GGATC 2 cut(s) 163, 276
AcsI RAATTY 1 cut(s) 730
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 1 cut(s) 1014
AfiI CCNNNNNNNGG 4 cut(s) 162, 206, 252, 518
AflII CTTAAG 1 cut(s) 478
AgsI TTSAA 4 cut(s) 590, 703, 1067, 1085
AhlI ACTAGT 1 cut(s) 310
AjuI GAANNNNNNNTTGG 2 cut(s) 358, 390
AleI CACNNNNGTG 1 cut(s) 815
AluBI AGCT 4 cut(s) 197, 263, 566, 807
AluI AGCT 4 cut(s) 197, 263, 566, 807
Alw26I GTCTC 3 cut(s) 68, 78, 963
AlwI GGATC 2 cut(s) 163, 276
AlwNI CAGNNNCTG 1 cut(s) 206
Aor13HI TCCGGA 1 cut(s) 862
AoxI GGCC 3 cut(s) 66, 550, 1007
ApoI RAATTY 1 cut(s) 730
ArsI GACNNNNNNTTYG 2 cut(s) 513, 545
AseI ATTAAT 1 cut(s) 668
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 616
AsuNHI GCTAGC 1 cut(s) 328
BbsI GAAGAC 1 cut(s) 30
BccI CCATC 3 cut(s) 254, 397, 844
BclI TGATCA 2 cut(s) 183, 982
BcoDI GTCTC 3 cut(s) 68, 78, 963
BcuI ACTAGT 1 cut(s) 310
BfaI CTAG 7 cut(s) 80, 101, 311, 329, 434, 518, 1090
BfrI CTTAAG 1 cut(s) 478
BmcAI AGTACT 1 cut(s) 1014
BmgT120I GGNCC 1 cut(s) 67
BmrI ACTGGG 1 cut(s) 97
BmsI GCATC 3 cut(s) 219, 526, 856
BmtI GCTAGC 1 cut(s) 332
BmuI ACTGGG 1 cut(s) 97
BpiI GAAGAC 1 cut(s) 30
BpmI CTGGAG 2 cut(s) 183, 915
BpuEI CTTGAG 1 cut(s) 243
BsaWI WCCGGW 1 cut(s) 862
Bsc4I CCNNNNNNNGG 4 cut(s) 162, 206, 252, 518
Bse1I ACTGG 4 cut(s) 92, 200, 1010, 1020
Bse3DI GCAATG 3 cut(s) 512, 945, 957
BseAI TCCGGA 1 cut(s) 862
BseGI GGATG 3 cut(s) 541, 871, 1071
BseLI CCNNNNNNNGG 4 cut(s) 162, 206, 252, 518
BseMI GCAATG 3 cut(s) 512, 945, 957
BseMII CTCAG 2 cut(s) 684, 767
BseNI ACTGG 4 cut(s) 92, 200, 1010, 1020
BseRI GAGGAG 2 cut(s) 19, 22
BseYI CCCAGC 1 cut(s) 193
BshFI GGCC 3 cut(s) 68, 552, 1009
BsiSI CCGG 1 cut(s) 863
BslFI GGGAC 2 cut(s) 268, 371
BslI CCNNNNNNNGG 4 cut(s) 162, 206, 252, 518
BsmAI GTCTC 3 cut(s) 68, 78, 963
BsmFI GGGAC 2 cut(s) 268, 371
BsmI GAATGC 1 cut(s) 869
BsnI GGCC 3 cut(s) 68, 552, 1009
Bsp13I TCCGGA 1 cut(s) 862
Bsp143I GATC 7 cut(s) 45, 168, 183, 268, 430, 466, 982
BspACI CCGC 2 cut(s) 1022, 1041
BspANI GGCC 3 cut(s) 68, 552, 1009
BspCNI CTCAG 2 cut(s) 685, 768
BspEI TCCGGA 1 cut(s) 862
BspHI TCATGA 1 cut(s) 427
BspOI GCTAGC 1 cut(s) 332
BspPI GGATC 2 cut(s) 163, 276
BspTI CTTAAG 1 cut(s) 478
BsrDI GCAATG 3 cut(s) 512, 945, 957
BsrI ACTGG 4 cut(s) 92, 200, 1010, 1020
BssMI GATC 7 cut(s) 45, 168, 183, 268, 430, 466, 982
Bst4CI ACNGT 2 cut(s) 152, 859
Bst6I CTCTTC 3 cut(s) 24, 240, 684
BstAFI CTTAAG 1 cut(s) 478
BstC8I GCNNGC 2 cut(s) 330, 1039
BstDEI CTNAG 3 cut(s) 124, 693, 776
BstF5I GGATG 3 cut(s) 541, 871, 1071
BstKTI GATC 7 cut(s) 48, 171, 186, 271, 433, 469, 985
BstMAI GTCTC 3 cut(s) 68, 78, 963
BstMBI GATC 7 cut(s) 45, 168, 183, 268, 430, 466, 982
BstNSI RCATGY 1 cut(s) 766
BstV2I GAAGAC 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 168
BstYI RGATCY 1 cut(s) 168
BsuRI GGCC 3 cut(s) 68, 552, 1009
BtsCI GGATG 3 cut(s) 541, 871, 1071
BtsI GCAGTG 2 cut(s) 288, 469
BtsIMutI CAGTG 4 cut(s) 288, 469, 822, 882
Cac8I GCNNGC 2 cut(s) 330, 1039
CaiI CAGNNNCTG 1 cut(s) 206
CciI TCATGA 1 cut(s) 427
Cfr13I GGNCC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 1013
CspCI CAANNNNNGTGG 2 cut(s) 871, 906
CviAII CATG 4 cut(s) 139, 298, 428, 763
CviQI GTAC 1 cut(s) 1013
DdeI CTNAG 3 cut(s) 124, 693, 776
DpnI GATC 7 cut(s) 47, 170, 185, 270, 432, 468, 984
DpnII GATC 7 cut(s) 45, 168, 183, 268, 430, 466, 982
Eam1104I CTCTTC 3 cut(s) 24, 240, 684
EarI CTCTTC 3 cut(s) 24, 240, 684
Eco57I CTGAAG 1 cut(s) 207
EcoRI GAATTC 1 cut(s) 730
EcoT22I ATGCAT 2 cut(s) 871, 957
FaeI CATG 4 cut(s) 142, 301, 431, 766
FaqI GGGAC 2 cut(s) 268, 371
FatI CATG 4 cut(s) 138, 297, 427, 762
FbaI TGATCA 2 cut(s) 183, 982
FblI GTMKAC 1 cut(s) 851
FokI GGATG 3 cut(s) 548, 878, 1058
FspBI CTAG 7 cut(s) 80, 101, 311, 329, 434, 518, 1090
GsaI CCCAGC 1 cut(s) 197
GsuI CTGGAG 2 cut(s) 183, 915
HaeIII GGCC 3 cut(s) 68, 552, 1009
HapII CCGG 1 cut(s) 863
Hin1II CATG 4 cut(s) 142, 301, 431, 766
HincII GTYRAC 3 cut(s) 277, 580, 852
HindII GTYRAC 3 cut(s) 277, 580, 852
HinfI GANTC 3 cut(s) 76, 256, 1029
HpaI GTTAAC 1 cut(s) 277
HpaII CCGG 1 cut(s) 863
HphI GGTGA 1 cut(s) 616
Hpy166II GTNNAC 5 cut(s) 115, 277, 308, 580, 852
Hpy188I TCNGA 3 cut(s) 694, 777, 982
Hpy188III TCNNGA 5 cut(s) 354, 428, 863, 999, 1067
Hpy8I GTNNAC 5 cut(s) 115, 277, 308, 580, 852
HpyAV CCTTC 2 cut(s) 7, 1073
HpyCH4III ACNGT 2 cut(s) 152, 859
HpyCH4IV ACGT 2 cut(s) 662, 888
HpyCH4V TGCA 6 cut(s) 395, 452, 539, 653, 869, 955
HpyF3I CTNAG 3 cut(s) 124, 693, 776
HpySE526I ACGT 2 cut(s) 662, 888
Hsp92II CATG 4 cut(s) 142, 301, 431, 766
Kpn2I TCCGGA 1 cut(s) 862
Ksp22I TGATCA 2 cut(s) 183, 982
KspAI GTTAAC 1 cut(s) 277
Kzo9I GATC 7 cut(s) 45, 168, 183, 268, 430, 466, 982
LmnI GCTCC 1 cut(s) 202
LweI GCATC 3 cut(s) 219, 526, 856
MaeI CTAG 7 cut(s) 80, 101, 311, 329, 434, 518, 1090
MaeII ACGT 2 cut(s) 662, 888
MalI GATC 7 cut(s) 47, 170, 185, 270, 432, 468, 984
MboI GATC 7 cut(s) 45, 168, 183, 268, 430, 466, 982
MboII GAAGA 5 cut(s) 35, 41, 227, 671, 920
MfeI CAATTG 1 cut(s) 540
MflI RGATCY 1 cut(s) 168
MluCI AATT 6 cut(s) 540, 590, 669, 730, 1044, 1085
MlyI GAGTC 3 cut(s) 70, 250, 1023
MmeI TCCRAC 2 cut(s) 21, 637
Mph1103I ATGCAT 2 cut(s) 871, 957
MroI TCCGGA 1 cut(s) 862
MseI TTAA 3 cut(s) 276, 479, 668
MslI CAYNNNNRTG 1 cut(s) 815
MspCI CTTAAG 1 cut(s) 478
MspI CCGG 1 cut(s) 863
MunI CAATTG 1 cut(s) 540
Mva1269I GAATGC 1 cut(s) 869
NdeII GATC 7 cut(s) 45, 168, 183, 268, 430, 466, 982
NheI GCTAGC 1 cut(s) 328
NlaIII CATG 4 cut(s) 142, 301, 431, 766
NsiI ATGCAT 2 cut(s) 871, 957
NspI RCATGY 1 cut(s) 766
OliI CACNNNNGTG 1 cut(s) 815
PagI TCATGA 1 cut(s) 427
PctI GAATGC 1 cut(s) 869
PflMI CCANNNNNTGG 1 cut(s) 206
PleI GAGTC 3 cut(s) 70, 250, 1023
PpsI GAGTC 3 cut(s) 70, 250, 1023
PshBI ATTAAT 1 cut(s) 668
PspFI CCCAGC 1 cut(s) 193
PspPI GGNCC 1 cut(s) 67
PstNI CAGNNNCTG 1 cut(s) 206
PsuI RGATCY 1 cut(s) 168
RsaI GTAC 1 cut(s) 1014
RsaNI GTAC 1 cut(s) 1013
RseI CAYNNNNRTG 1 cut(s) 815
SalI GTCGAC 1 cut(s) 850
SaqAI TTAA 3 cut(s) 276, 479, 668
Sau3AI GATC 7 cut(s) 45, 168, 183, 268, 430, 466, 982
Sau96I GGNCC 1 cut(s) 67
ScaI AGTACT 1 cut(s) 1014
SchI GAGTC 3 cut(s) 70, 250, 1023
SfaNI GCATC 3 cut(s) 219, 526, 856
SmiMI CAYNNNNRTG 1 cut(s) 815
SmlI CTYRAG 2 cut(s) 258, 478
SmoI CTYRAG 2 cut(s) 258, 478
SpeI ACTAGT 1 cut(s) 310
Sse9I AATT 6 cut(s) 540, 590, 669, 730, 1044, 1085
SsiI CCGC 2 cut(s) 1022, 1041
SspI AATATT 1 cut(s) 411
SspMI CTAG 7 cut(s) 80, 101, 311, 329, 434, 518, 1090
TaaI ACNGT 2 cut(s) 152, 859
TaiI ACGT 2 cut(s) 665, 891
TaqI TCGA 3 cut(s) 728, 851, 998
TasI AATT 6 cut(s) 540, 590, 669, 730, 1044, 1085
TatI WGTACW 1 cut(s) 1012
Tru1I TTAA 3 cut(s) 276, 479, 668
Tru9I TTAA 3 cut(s) 276, 479, 668
TscAI CASTG 4 cut(s) 295, 469, 822, 889
TspDTI ATGAA 1 cut(s) 612
TspGWI ACGGA 1 cut(s) 281
TspRI CASTG 4 cut(s) 295, 469, 822, 889
Van91I CCANNNNNTGG 1 cut(s) 206
Vha464I CTTAAG 1 cut(s) 478
VspI ATTAAT 1 cut(s) 668
XapI RAATTY 1 cut(s) 730
XceI RCATGY 1 cut(s) 766
XcmI CCANNNNNNNNNTGG 2 cut(s) 61, 942
XmiI GTMKAC 1 cut(s) 851
XspI CTAG 7 cut(s) 80, 101, 311, 329, 434, 518, 1090
ZrmI AGTACT 1 cut(s) 1014
Zsp2I ATGCAT 2 cut(s) 871, 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.