pycom07g16940

Tryptophan/tyrosine permease family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
19443285 .. 19445576
2292 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g16940.5

Sequence Viewer

Length: 1548 bp
ATGGAATCAAAACTCTTGTTTTCATCGACATCAACTACCTCCTTCCATCTCAAAAGAAGAGTTCACCAAAACAGCCCAAGTATTTGCATAAAACTCAACACCACTGTTCCTCTCAGAAGTAGCAGCTCCAGCTACAATGCTTGTTCCTGCCACCAGCTGCTGCTCCAGCAGCAGCAGAAAAAGCACTCATCATTTACTCCGAAGGCTTCTGCAAAGAATGCACAGACAGGTCCTACACAGTTGGCACTAAACCCTACCAAGGAGCCCAAGAAGAAAGGAACCATCGCTGGCGCAGTTGCTTTGATCATCGGTACTAGTATAGGCTCGGGATCGATCCTTGCACTCCCGGAGAAAGCTTCTCCAGCAGGATTGCTTCCAAGTTCAATATCCATGGTGGTATGTTGGGGGTTTCTCCTGATCGAGGCGATTTTGCTTGTCGAGATCAATGTAAGTATGAGGAGGAAGAAGCGAATCGAAGACAATGCTGAAAATGAACTGGAGGTGATTTCTATTAGGACTATGGCCCAAGAGACTCTAGGAGACTTTGGTGGAACTCTAGTCACTCTGATTTATATTTTCTTAGGCTACACTTCAGTCATTGCTTATAGTTCCAAGTCTGGAGATATTCTCTTCCATTTGATCAATCTTCCGGCTCCAGTTTCCGGCTTCTTTTTTACCATGTTTTTTACCCTGCTCATCGCCATAGGTGGGACTCGAGCCACTGATCAAGTTAACCAACTCCTTACTGCTTCCATGATAGGTTTATTACTAGCAATAGAGGTGCTAGCAGTTGTGTTTGGAGGGTGGTCAGGAGTAGAGGGAAGTGGAGATTGGGGGAAGGTCCCCGCTACGGTACCTGTGATTATCTTTGCTCTGGTGTATCATGACCTAGCACCCGTTCTTTGTGCTTATTTGGGAAGTGATCTCGCACGCCTAAGGATTTCGGTATTTCTTGGTAGTCTTGTTCCATTGCTAGCATTGCTCGTTTGGGATGCAATTGCACTTGGCCTCTCTGCGCAGGCCGATCAAGTTGTTGACCCTGTTGAGTTGCTTATGAGGGTGAAATGGAGTGGGATTTCATATATGGTAGAAGCTTTCTCACTCCTTGCAATTGGAACATCATTAATTGGTACTCTTCTTGGCTTCTCTGAGTTTTTCAAAGAACAACTTAACAACCTCTCGTCGATATCTTCTCCCACGCAAACACTCGAGAAACCGGACATCACATTCGAGCTGAGAAAATGGTGGGGAAGAAATCAAATTAGCCTTGCAGCAGTGGCAATGGTTGTTGGTCCATCTCTTATTGTGTCGACTAGTATTCCAGATGCATTCTCTACGGCCACAGACATTGCTGGAGGGTATGGTATGACAATGCTATATGGAGTTCTACCGCCGGCAATGGCGTGGGCGATGCACAACAAAGAATGTGAAAATGAGGAGCAAAAAACTTTATCAAGAGCAAGGCCTGTACTAGTTGGGGCAGGACTCTTTGCTTGTGCAATAGTGGGAGAGCAAATCGTACAGGATATCCTCGCATTTCATTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

516

Amino Acids

55.3

Weight (kDa)

7.08

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013714)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1017
Acc65I GGTACC 1 cut(s) 853
AccB1I GGYRCC 1 cut(s) 853
AccI GTMKAC 1 cut(s) 1310
AciI CCGC 2 cut(s) 846, 1391
AclWI GGATC 2 cut(s) 328, 337
AcoI YGGCCR 1 cut(s) 1338
AcuI CTGAAG 1 cut(s) 576
AfaI GTAC 5 cut(s) 313, 855, 1132, 1470, 1521
AfiI CCNNNNNNNGG 5 cut(s) 259, 421, 662, 708, 850
AgsI TTSAA 2 cut(s) 384, 1159
AhlI ACTAGT 3 cut(s) 314, 1313, 1471
AjuI GAANNNNNNNTTGG 2 cut(s) 814, 846
AluBI AGCT 6 cut(s) 126, 132, 157, 356, 1094, 1234
AluI AGCT 6 cut(s) 126, 132, 157, 356, 1094, 1234
Alw26I GTCTC 2 cut(s) 524, 534
AlwI GGATC 2 cut(s) 328, 337
AlwNI CAGNNNCTG 1 cut(s) 160
Ama87I CYCGRG 3 cut(s) 325, 714, 1208
AoxI GGCC 5 cut(s) 522, 1006, 1020, 1338, 1463
ApeKI GCWGC 6 cut(s) 123, 157, 160, 169, 172, 1271
ArsI GACNNNNNNTTYG 2 cut(s) 1211, 1243
AseI ATTAAT 1 cut(s) 1124
Asp718I GGTACC 1 cut(s) 853
AspLEI GCGC 2 cut(s) 293, 1018
AspS9I GGNCC 4 cut(s) 230, 523, 841, 1292
AsuC2I CCSGG 1 cut(s) 347
AsuHPI GGTGA 3 cut(s) 56, 514, 1072
AsuNHI GCTAGC 2 cut(s) 784, 973
AvaI CYCGRG 3 cut(s) 325, 714, 1208
AvaII GGWCC 3 cut(s) 230, 841, 1292
AxyI CCTNAGG 1 cut(s) 935
BanI GGYRCC 1 cut(s) 853
BanII GRGCYC 1 cut(s) 267
BbsI GAAGAC 1 cut(s) 483
BbvI GCAGC 6 cut(s) 135, 144, 147, 181, 184, 1283
BccI CCATC 3 cut(s) 54, 290, 1303
BceAI ACGGC 1 cut(s) 1353
BcgI CGANNNNNNTGC 2 cut(s) 464, 498
BclI TGATCA 3 cut(s) 303, 639, 724
BcnI CCSGG 1 cut(s) 347
BcoDI GTCTC 2 cut(s) 524, 534
BcuI ACTAGT 3 cut(s) 314, 1313, 1471
BisI GCNGC 6 cut(s) 124, 158, 161, 170, 173, 1272
BlsI GCNGC 6 cut(s) 125, 159, 162, 171, 174, 1273
Bme1390I CCNGG 1 cut(s) 347
Bme18I GGWCC 3 cut(s) 230, 841, 1292
BmeT110I CYCGRG 3 cut(s) 325, 714, 1208
BmgT120I GGNCC 4 cut(s) 230, 523, 841, 1292
BmiI GGNNCC 5 cut(s) 264, 280, 654, 843, 855
BmrFI CCNGG 1 cut(s) 347
BmsI GCATC 3 cut(s) 982, 1315, 1401
BmtI GCTAGC 2 cut(s) 788, 977
BpiI GAAGAC 1 cut(s) 483
BplI GAGNNNNNCTC 2 cut(s) 612, 644
BpmI CTGGAG 7 cut(s) 112, 149, 345, 518, 639, 639, 1374
BpuMI CCSGG 1 cut(s) 347
Bsa29I ATCGAT 1 cut(s) 332
BsaJI CCNNGG 2 cut(s) 258, 390
BsaWI WCCGGW 1 cut(s) 1216
Bsc4I CCNNNNNNNGG 5 cut(s) 259, 421, 662, 708, 850
Bse118I RCCGGY 1 cut(s) 1393
Bse1I ACTGG 2 cut(s) 501, 656
Bse21I CCTNAGG 1 cut(s) 935
Bse3DI GCAATG 6 cut(s) 597, 968, 977, 1287, 1347, 1404
BseCI ATCGAT 1 cut(s) 332
BseDI CCNNGG 2 cut(s) 258, 390
BseGI GGATG 1 cut(s) 997
BseLI CCNNNNNNNGG 5 cut(s) 259, 421, 662, 708, 850
BseMI GCAATG 6 cut(s) 597, 968, 977, 1287, 1347, 1404
BseMII CTCAG 3 cut(s) 127, 1140, 1226
BseNI ACTGG 2 cut(s) 501, 656
BseRI GAGGAG 2 cut(s) 472, 1451
BseXI GCAGC 6 cut(s) 135, 144, 147, 181, 184, 1283
BshFI GGCC 5 cut(s) 524, 1008, 1022, 1340, 1465
BshNI GGYRCC 1 cut(s) 853
BshVI ATCGAT 1 cut(s) 332
BsiHKCI CYCGRG 3 cut(s) 325, 714, 1208
BsiSI CCGG 5 cut(s) 347, 650, 663, 1217, 1394
BslFI GGGAC 2 cut(s) 724, 827
BslI CCNNNNNNNGG 5 cut(s) 259, 421, 662, 708, 850
BsmAI GTCTC 2 cut(s) 524, 534
BsmFI GGGAC 2 cut(s) 724, 827
BsmI GAATGC 2 cut(s) 223, 1328
BsnI GGCC 5 cut(s) 524, 1008, 1022, 1340, 1465
BsoBI CYCGRG 3 cut(s) 325, 714, 1208
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 9 cut(s) 303, 329, 333, 417, 441, 639, 724, 922, 1024
Bsp19I CCATGG 1 cut(s) 390
BspACI CCGC 2 cut(s) 846, 1391
BspANI GGCC 5 cut(s) 524, 1008, 1022, 1340, 1465
BspCNI CTCAG 3 cut(s) 126, 1141, 1227
BspDI ATCGAT 1 cut(s) 332
BspHI TCATGA 1 cut(s) 883
BspLI GGNNCC 5 cut(s) 264, 280, 654, 843, 855
BspOI GCTAGC 2 cut(s) 788, 977
BspPI GGATC 2 cut(s) 328, 337
BspT107I GGYRCC 1 cut(s) 853
BsrDI GCAATG 6 cut(s) 597, 968, 977, 1287, 1347, 1404
BsrFI RCCGGY 1 cut(s) 1393
BsrI ACTGG 2 cut(s) 501, 656
BssAI RCCGGY 1 cut(s) 1393
BssECI CCNNGG 2 cut(s) 258, 390
BssMI GATC 9 cut(s) 303, 329, 333, 417, 441, 639, 724, 922, 1024
BssT1I CCWWGG 2 cut(s) 258, 390
Bst4CI ACNGT 3 cut(s) 106, 240, 853
Bst6I CTCTTC 3 cut(s) 52, 635, 1140
BstAPI GCANNNNNTGC 1 cut(s) 218
BstC8I GCNNGC 6 cut(s) 289, 786, 931, 975, 1020, 1395
BstDEI CTNAG 5 cut(s) 113, 580, 935, 1149, 1235
BstDSI CCRYGG 1 cut(s) 390
BstENI CCTNNNNNAGG 1 cut(s) 419
BstF5I GGATG 1 cut(s) 997
BstHHI GCGC 2 cut(s) 293, 1018
BstKTI GATC 9 cut(s) 306, 332, 336, 420, 444, 642, 727, 925, 1027
BstMAI GTCTC 2 cut(s) 524, 534
BstMBI GATC 9 cut(s) 303, 329, 333, 417, 441, 639, 724, 922, 1024
BstMWI GCNNNNNNNGC 8 cut(s) 129, 166, 169, 181, 218, 362, 979, 1277
BstSCI CCNGG 1 cut(s) 345
BstV1I GCAGC 6 cut(s) 135, 144, 147, 181, 184, 1283
BstV2I GAAGAC 1 cut(s) 483
Bsu15I ATCGAT 1 cut(s) 332
Bsu36I CCTNAGG 1 cut(s) 935
BsuRI GGCC 5 cut(s) 524, 1008, 1022, 1340, 1465
BsuTUI ATCGAT 1 cut(s) 332
BtgI CCRYGG 1 cut(s) 390
BtgZI GCGATG 3 cut(s) 268, 682, 1424
BtsCI GGATG 1 cut(s) 997
BtsI GCAGTG 1 cut(s) 1281
BtsIMutI CAGTG 3 cut(s) 102, 720, 1281
Cac8I GCNNGC 6 cut(s) 289, 786, 931, 975, 1020, 1395
CaiI CAGNNNCTG 1 cut(s) 160
CciI TCATGA 1 cut(s) 883
CfoI GCGC 2 cut(s) 293, 1018
Cfr10I RCCGGY 1 cut(s) 1393
Cfr13I GGNCC 4 cut(s) 230, 523, 841, 1292
ClaI ATCGAT 1 cut(s) 332
Csp6I GTAC 5 cut(s) 312, 854, 1131, 1469, 1520
CspCI CAANNNNNGTGG 2 cut(s) 1330, 1365
CviAII CATG 4 cut(s) 391, 679, 754, 884
CviQI GTAC 5 cut(s) 312, 854, 1131, 1469, 1520
DdeI CTNAG 5 cut(s) 113, 580, 935, 1149, 1235
DpnI GATC 9 cut(s) 305, 331, 335, 419, 443, 641, 726, 924, 1026
DpnII GATC 9 cut(s) 303, 329, 333, 417, 441, 639, 724, 922, 1024
EaeI YGGCCR 1 cut(s) 1338
Eam1104I CTCTTC 3 cut(s) 52, 635, 1140
EarI CTCTTC 3 cut(s) 52, 635, 1140
Eco130I CCWWGG 2 cut(s) 258, 390
Eco147I AGGCCT 1 cut(s) 1465
Eco24I GRGCYC 1 cut(s) 267
Eco32I GATATC 2 cut(s) 1188, 1528
Eco47I GGWCC 3 cut(s) 230, 841, 1292
Eco57I CTGAAG 1 cut(s) 576
Eco81I CCTNAGG 1 cut(s) 935
Eco88I CYCGRG 3 cut(s) 325, 714, 1208
EcoNI CCTNNNNNAGG 1 cut(s) 419
EcoO109I RGGNCCY 2 cut(s) 230, 841
EcoRV GATATC 2 cut(s) 1188, 1528
EcoT14I CCWWGG 2 cut(s) 258, 390
EcoT22I ATGCAT 1 cut(s) 1330
EcoT38I GRGCYC 1 cut(s) 267
ErhI CCWWGG 2 cut(s) 258, 390
FaeI CATG 4 cut(s) 394, 682, 757, 887
FalI AAGNNNNNCTT 2 cut(s) 1152, 1184
FaqI GGGAC 2 cut(s) 724, 827
FatI CATG 4 cut(s) 390, 678, 753, 883
FauI CCCGC 1 cut(s) 853
FbaI TGATCA 3 cut(s) 303, 639, 724
FblI GTMKAC 1 cut(s) 1310
Fnu4HI GCNGC 6 cut(s) 124, 158, 161, 170, 173, 1272
FokI GGATG 1 cut(s) 1004
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 6 cut(s) 124, 158, 161, 170, 173, 1272
FspI TGCGCA 1 cut(s) 1017
GlaI GCGC 2 cut(s) 292, 1017
GluI GCNGC 6 cut(s) 124, 158, 161, 170, 173, 1272
GsuI CTGGAG 7 cut(s) 112, 149, 345, 518, 639, 639, 1374
HaeIII GGCC 5 cut(s) 524, 1008, 1022, 1340, 1465
HapII CCGG 5 cut(s) 347, 650, 663, 1217, 1394
HhaI GCGC 2 cut(s) 293, 1018
Hin1II CATG 4 cut(s) 394, 682, 757, 887
Hin6I GCGC 2 cut(s) 291, 1016
HinP1I GCGC 2 cut(s) 291, 1016
HincII GTYRAC 3 cut(s) 733, 1036, 1311
HindII GTYRAC 3 cut(s) 733, 1036, 1311
HindIII AAGCTT 2 cut(s) 354, 1092
HinfI GANTC 5 cut(s) 5, 471, 532, 712, 1485
HpaI GTTAAC 1 cut(s) 733
HpaII CCGG 5 cut(s) 347, 650, 663, 1217, 1394
HphI GGTGA 3 cut(s) 56, 514, 1072
Hpy166II GTNNAC 4 cut(s) 64, 733, 1036, 1311
Hpy188I TCNGA 4 cut(s) 116, 201, 567, 1150
Hpy188III TCNNGA 9 cut(s) 327, 415, 439, 618, 810, 884, 1210, 1322, 1455
Hpy8I GTNNAC 4 cut(s) 64, 733, 1036, 1311
Hpy99I CGWCG 1 cut(s) 1186
HpyAV CCTTC 3 cut(s) 52, 196, 832
HpyCH4III ACNGT 3 cut(s) 106, 240, 853
HpyF10VI GCNNNNNNNGC 8 cut(s) 129, 166, 169, 181, 218, 362, 979, 1277
HpyF3I CTNAG 5 cut(s) 113, 580, 935, 1149, 1235
Hsp92II CATG 4 cut(s) 394, 682, 757, 887
HspAI GCGC 2 cut(s) 291, 1016
KpnI GGTACC 1 cut(s) 857
KroI GCCGGC 1 cut(s) 1393
KroNI GCCGGC 1 cut(s) 1395
Ksp22I TGATCA 3 cut(s) 303, 639, 724
KspAI GTTAAC 1 cut(s) 733
Kzo9I GATC 9 cut(s) 303, 329, 333, 417, 441, 639, 724, 922, 1024
LmnI GCTCC 5 cut(s) 131, 168, 262, 658, 1438
Lsp1109I GCAGC 6 cut(s) 135, 144, 147, 181, 184, 1283
LweI GCATC 3 cut(s) 982, 1315, 1401
MaeIII GTNAC 1 cut(s) 559
MalI GATC 9 cut(s) 305, 331, 335, 419, 443, 641, 726, 924, 1026
MboI GATC 9 cut(s) 303, 329, 333, 417, 441, 639, 724, 922, 1024
MboII GAAGA 9 cut(s) 69, 283, 475, 488, 622, 638, 1127, 1182, 1263
MfeI CAATTG 2 cut(s) 996, 1110
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 4 cut(s) 996, 1110, 1125, 1260
MlyI GAGTC 3 cut(s) 526, 706, 1479
Mph1103I ATGCAT 1 cut(s) 1330
MroNI GCCGGC 1 cut(s) 1393
MseI TTAA 3 cut(s) 732, 1124, 1170
MspA1I CMGCKG 1 cut(s) 157
MspI CCGG 5 cut(s) 347, 650, 663, 1217, 1394
MspR9I CCNGG 1 cut(s) 347
MunI CAATTG 2 cut(s) 996, 1110
Mva1269I GAATGC 2 cut(s) 223, 1328
MwoI GCNNNNNNNGC 8 cut(s) 129, 166, 169, 181, 218, 362, 979, 1277
NaeI GCCGGC 1 cut(s) 1395
NciI CCSGG 1 cut(s) 347
NcoI CCATGG 1 cut(s) 390
NdeII GATC 9 cut(s) 303, 329, 333, 417, 441, 639, 724, 922, 1024
NgoMIV GCCGGC 1 cut(s) 1393
NheI GCTAGC 2 cut(s) 784, 973
NlaIII CATG 4 cut(s) 394, 682, 757, 887
NlaIV GGNNCC 5 cut(s) 264, 280, 654, 843, 855
NmuCI GTSAC 1 cut(s) 559
NsbI TGCGCA 1 cut(s) 1017
NsiI ATGCAT 1 cut(s) 1330
PaeR7I CTCGAG 2 cut(s) 714, 1208
PagI TCATGA 1 cut(s) 883
PceI AGGCCT 1 cut(s) 1465
PctI GAATGC 2 cut(s) 223, 1328
PdiI GCCGGC 1 cut(s) 1395
PfeI GAWTC 2 cut(s) 5, 471
PfoI TCCNGGA 1 cut(s) 345
PkrI GCNGC 6 cut(s) 125, 159, 162, 171, 174, 1273
PleI GAGTC 3 cut(s) 526, 706, 1479
PpsI GAGTC 3 cut(s) 526, 706, 1479
PpuMI RGGWCCY 2 cut(s) 230, 841
PshBI ATTAAT 1 cut(s) 1124
Psp5II RGGWCCY 2 cut(s) 230, 841
PspN4I GGNNCC 5 cut(s) 264, 280, 654, 843, 855
PspPI GGNCC 4 cut(s) 230, 523, 841, 1292
PspPPI RGGWCCY 2 cut(s) 230, 841
PspXI VCTCGAGB 1 cut(s) 714
PstNI CAGNNNCTG 1 cut(s) 160
PvuII CAGCTG 1 cut(s) 157
RsaI GTAC 5 cut(s) 313, 855, 1132, 1470, 1521
RsaNI GTAC 5 cut(s) 312, 854, 1131, 1469, 1520
SalI GTCGAC 1 cut(s) 1309
SaqAI TTAA 3 cut(s) 732, 1124, 1170
SatI GCNGC 6 cut(s) 124, 158, 161, 170, 173, 1272
Sau3AI GATC 9 cut(s) 303, 329, 333, 417, 441, 639, 724, 922, 1024
Sau96I GGNCC 4 cut(s) 230, 523, 841, 1292
SchI GAGTC 3 cut(s) 526, 706, 1479
ScrFI CCNGG 1 cut(s) 347
SduI GDGCHC 1 cut(s) 267
SfaNI GCATC 3 cut(s) 982, 1315, 1401
Sfr274I CTCGAG 2 cut(s) 714, 1208
SinI GGWCC 3 cut(s) 230, 841, 1292
SlaI CTCGAG 2 cut(s) 714, 1208
SmlI CTYRAG 2 cut(s) 714, 1208
SmoI CTYRAG 2 cut(s) 714, 1208
SpeI ACTAGT 3 cut(s) 314, 1313, 1471
Sse9I AATT 4 cut(s) 996, 1110, 1125, 1260
SseBI AGGCCT 1 cut(s) 1465
SsiI CCGC 2 cut(s) 846, 1391
StuI AGGCCT 1 cut(s) 1465
StyD4I CCNGG 1 cut(s) 345
StyI CCWWGG 2 cut(s) 258, 390
TaaI ACNGT 3 cut(s) 106, 240, 853
TasI AATT 4 cut(s) 996, 1110, 1125, 1260
TatI WGTACW 1 cut(s) 1468
TfiI GAWTC 2 cut(s) 5, 471
Tru1I TTAA 3 cut(s) 732, 1124, 1170
Tru9I TTAA 3 cut(s) 732, 1124, 1170
TscAI CASTG 3 cut(s) 109, 727, 1281
TseFI GTSAC 1 cut(s) 559
TseI GCWGC 6 cut(s) 123, 157, 160, 169, 172, 1271
Tsp45I GTSAC 1 cut(s) 559
TspDTI ATGAA 4 cut(s) 12, 507, 1068, 1529
TspRI CASTG 3 cut(s) 109, 727, 1281
VpaK11BI GGWCC 3 cut(s) 230, 841, 1292
VspI ATTAAT 1 cut(s) 1124
XagI CCTNNNNNAGG 1 cut(s) 419
XhoI CTCGAG 2 cut(s) 714, 1208
XmiI GTMKAC 1 cut(s) 1310
Zsp2I ATGCAT 1 cut(s) 1330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.