FvH4_7g20080

IQ-DOMAIN 1-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
16398396 .. 16402301
3906 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g20080.t1

Sequence Viewer

Length: 1626 bp
ATGGGGAGGAAAGGGAGTTGGTTTTCTGCAGTGAAGAAAGCCCTCAACCCTGAGTCCAAGGAAAAGAAAGATCAGAAATCTAAGTCAAAGAAAAGATGGTTTGCGAAGAACAAGGAGTATGGGGAAAATGCAGATCATTTGCAAAATGCAGATCATGTGGTGAACGATCATGTGATTTCATACAAGGAAGAATCTGAATTTGTGATTCCCACTTCCATTGCGCCACCTCCTCCTCCACCAGCTCTTCCTACACTTCCTACAATAAAAGAGAAGTTAAATGAGGGTGAGGATTCACAGAGAACCTCTCTTGCTCTAAAGGAAGATGTCGAATTATTGGAGGCAGAGGATGCTCAGAGCGAGCGTGTTTACTCTGTCGCCCTTGCCACAGCAATGGCTGCAGAGGCCGCCGTTGCTGCTGCTCAGGCTGCTGCAGAGGTTGTTCGTCTCACTGGACTGACTCATTTCCCGGGGAAATCTTTGGAGGAGGTAGCAGCCATCAAGATTCAGACGGCATTCCGAGGGCACTTGGCAAGGAGGGCATTACGGGCTTTGAGAGGATTAGTGAGGTTGAAATCATTGGTAGAGGGTCAATCAGTTAAACGCCAAGCGACTACCACCTTAAAATGCATGCAGACTGTTGCTCGTGTACAATCTGAGATTCGTGCAAGGAGGATTAGAATGTCTGAGGAGAATCAGGCGCTTCAGCGACAGATTCAACAGAAGCAAGAGAAAGAGTTGAAAGAGATGGAGAAACAAAGAGTTGCTTCTATTGGAGACAACTGGAACCTTAGCCCCCAATCTAAGGAGGAGGTCGAGGCAAAGCTACAGAACAGACAAGAAGCTGCTAAGAGAAGAGAAAGGGCCTTGGCCTATTCATTCTCTCATCAGAGAATGTGGAAGAATTCTTCAAAATCTCAACATCCTACATTCATGGACCCCAGCAATCCCCACTGGGGTTGGAGTTGGTTAGAGAGATGGATGGCTGCAAGACCATGGGAGAGCCAAAGCACATCAGACTTCAACGACCGGGCCTCATTGAGGAGTGCAGCAAGCCGTGCATCAATGTCAGTTGCGGAAATCACCAAAGCTTATGCTCTTCGTGATGTCCACCGCGATAACAAGCCTCCTTCCCCAACTGGCCAAAGATCAAGCCGGCCTCCTAGTCGACAATCCCCTTCAGCTATTACCAATACACGATCTTCATCATGGAGAACCCCAAAGAAGAACAGCTGGGGCGGGGATGAGGACACCAAAAGTACTTGCAGTGTGCAGTCCGAAAGATTTAACAGGAGGCATAGCATTGCAGGCTCCTCAATAAGAGATGATGATAGCCTTGCAAGCACACCTTCAGTTCCTTCTTCAAAAAAATACGCAACACCTACAAGATCAACAAAGCCAAGGTCACGGCTGGCAAGCCCGAGCTCATCAGGGTTAGAAAATAATAAGACACCAACACCAGATAAGGGATCATCACCATCAGTGAGTTCTGTAAAGAAGAGGCTGTCATACCCTGCTTCCCCTGCTGGACAAAGGAGGCAGTCGGGTCCTCCTAAGGTTGGCAGTAGCTCCCCTAAGGCTGCAGCTCGCACAGATAAGAAAGTTAGCAATGGTTGGGGAAGCAGGTAG

Protein Analysis

542

Amino Acids

60.07

Weight (kDa)

10.2

Isoelectric Point (pI)

67.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1611
AccI GTMKAC 1 cut(s) 1165
AccII CGCG 1 cut(s) 1113
AciI CCGC 4 cut(s) 405, 1073, 1111, 1236
AclWI GGATC 1 cut(s) 1474
AcoI YGGCCR 1 cut(s) 1138
AcsI RAATTY 2 cut(s) 197, 901
AcuI CTGAAG 3 cut(s) 686, 1161, 1332
AfaI GTAC 2 cut(s) 648, 1258
AfiI CCNNNNNNNGG 5 cut(s) 802, 953, 1038, 1463, 1556
AgsI TTSAA 6 cut(s) 571, 716, 739, 909, 1021, 1362
AluBI AGCT 9 cut(s) 242, 823, 842, 1088, 1181, 1230, 1422, 1566, 1583
AluI AGCT 9 cut(s) 242, 823, 842, 1088, 1181, 1230, 1422, 1566, 1583
Alw21I GWGCWC 1 cut(s) 1424
Alw26I GTCTC 2 cut(s) 449, 768
AlwI GGATC 1 cut(s) 1474
Ama87I CYCGRG 2 cut(s) 466, 1417
AoxI GGCC 6 cut(s) 402, 861, 867, 1029, 1138, 1154
ApoI RAATTY 2 cut(s) 197, 901
ArsI GACNNNNNNTTYG 2 cut(s) 1385, 1417
AspLEI GCGC 2 cut(s) 223, 700
AspS9I GGNCC 4 cut(s) 861, 934, 1029, 1544
AsuC2I CCSGG 3 cut(s) 467, 468, 1028
AsuHPI GGTGA 4 cut(s) 172, 296, 1072, 1464
AvaI CYCGRG 2 cut(s) 466, 1417
AvaII GGWCC 2 cut(s) 934, 1544
AxyI CCTNAGG 2 cut(s) 1551, 1572
BaeGI GKGCMC 1 cut(s) 525
BalI TGGCCA 1 cut(s) 1140
BanII GRGCYC 1 cut(s) 1424
BauI CACGAG 1 cut(s) 642
Bbv12I GWGCWC 1 cut(s) 1424
BccI CCATC 6 cut(s) 90, 503, 739, 969, 973, 1483
BceAI ACGGC 4 cut(s) 392, 525, 1038, 1421
BcnI CCSGG 3 cut(s) 467, 468, 1028
BcoDI GTCTC 2 cut(s) 449, 768
BfaI CTAG 1 cut(s) 1161
BfmI CTRYAG 5 cut(s) 27, 396, 429, 824, 1578
BfoI RGCGCY 1 cut(s) 701
BfuAI ACCTGC 1 cut(s) 1611
BmcAI AGTACT 1 cut(s) 1258
Bme1390I CCNGG 3 cut(s) 467, 468, 1028
Bme18I GGWCC 2 cut(s) 934, 1544
BmeT110I CYCGRG 2 cut(s) 466, 1417
BmgT120I GGNCC 4 cut(s) 861, 934, 1029, 1544
BmiI GGNNCC 4 cut(s) 785, 936, 1309, 1545
BmrFI CCNGG 3 cut(s) 467, 468, 1028
BmrI ACTGGG 1 cut(s) 961
BmsI GCATC 2 cut(s) 337, 1067
BmuI ACTGGG 1 cut(s) 961
BplI GAGNNNNNCTC 2 cut(s) 289, 321
Bpu10I CCTNAGC 2 cut(s) 420, 788
BpuMI CCSGG 3 cut(s) 467, 468, 1028
BsaBI GATNNNNATC 1 cut(s) 1201
BsaJI CCNNGG 7 cut(s) 57, 466, 467, 517, 864, 992, 1397
Bsc4I CCNNNNNNNGG 5 cut(s) 802, 953, 1038, 1463, 1556
Bse118I RCCGGY 1 cut(s) 1152
Bse1I ACTGG 4 cut(s) 454, 785, 956, 1141
Bse21I CCTNAGG 2 cut(s) 1551, 1572
Bse3DI GCAATG 4 cut(s) 216, 396, 1299, 1612
Bse8I GATNNNNATC 1 cut(s) 1201
BseDI CCNNGG 7 cut(s) 57, 466, 467, 517, 864, 992, 1397
BseGI GGATG 4 cut(s) 352, 919, 984, 1246
BseJI GATNNNNATC 1 cut(s) 1201
BseLI CCNNNNNNNGG 5 cut(s) 802, 953, 1038, 1463, 1556
BseMI GCAATG 4 cut(s) 216, 396, 1299, 1612
BseMII CTCAG 5 cut(s) 42, 365, 434, 645, 675
BseNI ACTGG 4 cut(s) 454, 785, 956, 1141
BseRI GAGGAG 7 cut(s) 219, 222, 497, 701, 821, 1054, 1300
BseSI GKGCMC 1 cut(s) 525
BseYI CCCAGC 2 cut(s) 938, 1230
BsgI GTGCAG 2 cut(s) 1065, 1289
Bsh1236I CGCG 1 cut(s) 1113
Bsh1285I CGRYCG 1 cut(s) 1027
BshFI GGCC 6 cut(s) 404, 863, 869, 1031, 1140, 1156
BsiEI CGRYCG 1 cut(s) 1027
BsiHKAI GWGCWC 1 cut(s) 1424
BsiHKCI CYCGRG 2 cut(s) 466, 1417
BsiSI CCGG 3 cut(s) 467, 1027, 1153
BslI CCNNNNNNNGG 5 cut(s) 802, 953, 1038, 1463, 1556
BsmAI GTCTC 2 cut(s) 449, 768
BsmBI CGTCTC 1 cut(s) 449
BsmI GAATGC 1 cut(s) 512
BsnI GGCC 6 cut(s) 404, 863, 869, 1031, 1140, 1156
BsoBI CYCGRG 2 cut(s) 466, 1417
Bsp1286I GDGCHC 2 cut(s) 525, 1424
Bsp1407I TGTACA 1 cut(s) 646
Bsp143I GATC 8 cut(s) 70, 133, 151, 166, 1145, 1196, 1385, 1466
Bsp19I CCATGG 1 cut(s) 992
BspACI CCGC 4 cut(s) 405, 1073, 1111, 1236
BspANI GGCC 6 cut(s) 404, 863, 869, 1031, 1140, 1156
BspCNI CTCAG 5 cut(s) 43, 364, 433, 646, 676
BspFNI CGCG 1 cut(s) 1113
BspLI GGNNCC 4 cut(s) 785, 936, 1309, 1545
BspMAI CTGCAG 4 cut(s) 31, 400, 433, 1582
BspMI ACCTGC 1 cut(s) 1611
BspPI GGATC 1 cut(s) 1474
BspQI GCTCTTC 2 cut(s) 249, 1101
BsrDI GCAATG 4 cut(s) 216, 396, 1299, 1612
BsrFI RCCGGY 1 cut(s) 1152
BsrGI TGTACA 1 cut(s) 646
BsrI ACTGG 4 cut(s) 454, 785, 956, 1141
BssAI RCCGGY 1 cut(s) 1152
BssECI CCNNGG 7 cut(s) 57, 466, 467, 517, 864, 992, 1397
BssMI GATC 8 cut(s) 70, 133, 151, 166, 1145, 1196, 1385, 1466
BssSI CACGAG 1 cut(s) 642
BssT1I CCWWGG 4 cut(s) 57, 864, 992, 1397
Bst2BI CACGAG 1 cut(s) 642
Bst4CI ACNGT 1 cut(s) 637
Bst6I CTCTTC 4 cut(s) 249, 847, 1101, 1490
BstAPI GCANNNNNTGC 3 cut(s) 347, 395, 1055
BstAUI TGTACA 1 cut(s) 646
BstC8I GCNNGC 9 cut(s) 359, 629, 1051, 1154, 1306, 1339, 1410, 1414, 1585
BstDSI CCRYGG 1 cut(s) 992
BstENI CCTNNNNNAGG 1 cut(s) 1036
BstF5I GGATG 4 cut(s) 352, 919, 984, 1246
BstFNI CGCG 1 cut(s) 1113
BstH2I RGCGCY 1 cut(s) 701
BstHHI GCGC 2 cut(s) 223, 700
BstKTI GATC 8 cut(s) 73, 136, 154, 169, 1148, 1199, 1388, 1469
BstMAI GTCTC 2 cut(s) 449, 768
BstMBI GATC 8 cut(s) 70, 133, 151, 166, 1145, 1196, 1385, 1466
BstMCI CGRYCG 1 cut(s) 1027
BstNSI RCATGY 1 cut(s) 631
BstSCI CCNGG 3 cut(s) 465, 466, 1026
BstSFI CTRYAG 5 cut(s) 27, 396, 429, 824, 1578
BstSLI GKGCMC 1 cut(s) 525
BstUI CGCG 1 cut(s) 1113
BstXI CCANNNNNNTGG 1 cut(s) 391
Bsu36I CCTNAGG 2 cut(s) 1551, 1572
BsuRI GGCC 6 cut(s) 404, 863, 869, 1031, 1140, 1156
BtgI CCRYGG 1 cut(s) 992
BtsCI GGATG 4 cut(s) 352, 919, 984, 1246
BtsI GCAGTG 2 cut(s) 36, 1270
BtsIMutI CAGTG 5 cut(s) 36, 447, 949, 1270, 1485
BveI ACCTGC 1 cut(s) 1611
Cac8I GCNNGC 9 cut(s) 359, 629, 1051, 1154, 1306, 1339, 1410, 1414, 1585
CfoI GCGC 2 cut(s) 223, 700
Cfr10I RCCGGY 1 cut(s) 1152
Cfr13I GGNCC 4 cut(s) 861, 934, 1029, 1544
Cfr9I CCCGGG 1 cut(s) 466
Csp6I GTAC 2 cut(s) 647, 1257
CspCI CAANNNNNGTGG 4 cut(s) 199, 234, 938, 973
CviAII CATG 6 cut(s) 155, 170, 628, 931, 993, 1206
CviQI GTAC 2 cut(s) 647, 1257
DpnI GATC 8 cut(s) 72, 135, 153, 168, 1147, 1198, 1387, 1468
DpnII GATC 8 cut(s) 70, 133, 151, 166, 1145, 1196, 1385, 1466
EaeI YGGCCR 1 cut(s) 1138
Eam1104I CTCTTC 4 cut(s) 249, 847, 1101, 1490
EarI CTCTTC 4 cut(s) 249, 847, 1101, 1490
Ecl136II GAGCTC 1 cut(s) 1422
Eco130I CCWWGG 4 cut(s) 57, 864, 992, 1397
Eco24I GRGCYC 1 cut(s) 1424
Eco47I GGWCC 2 cut(s) 934, 1544
Eco53kI GAGCTC 1 cut(s) 1422
Eco57I CTGAAG 3 cut(s) 686, 1161, 1332
Eco81I CCTNAGG 2 cut(s) 1551, 1572
Eco88I CYCGRG 2 cut(s) 466, 1417
EcoICRI GAGCTC 1 cut(s) 1422
EcoNI CCTNNNNNAGG 1 cut(s) 1036
EcoO109I RGGNCCY 2 cut(s) 861, 1544
EcoRI GAATTC 1 cut(s) 901
EcoT14I CCWWGG 4 cut(s) 57, 864, 992, 1397
EcoT22I ATGCAT 1 cut(s) 629
EcoT38I GRGCYC 1 cut(s) 1424
ErhI CCWWGG 4 cut(s) 57, 864, 992, 1397
Esp3I CGTCTC 1 cut(s) 449
FaeI CATG 6 cut(s) 158, 173, 631, 934, 996, 1209
FalI AAGNNNNNCTT 4 cut(s) 748, 780, 1330, 1362
FatI CATG 6 cut(s) 154, 169, 627, 930, 992, 1205
FauI CCCGC 1 cut(s) 1229
FblI GTMKAC 1 cut(s) 1165
FokI GGATG 4 cut(s) 359, 906, 991, 1253
FriOI GRGCYC 1 cut(s) 1424
FspBI CTAG 1 cut(s) 1161
GlaI GCGC 2 cut(s) 222, 699
GsaI CCCAGC 2 cut(s) 942, 1234
HaeII RGCGCY 1 cut(s) 701
HaeIII GGCC 6 cut(s) 404, 863, 869, 1031, 1140, 1156
HapII CCGG 3 cut(s) 467, 1027, 1153
HhaI GCGC 2 cut(s) 223, 700
Hin1II CATG 6 cut(s) 158, 173, 631, 934, 996, 1209
Hin6I GCGC 2 cut(s) 221, 698
HinP1I GCGC 2 cut(s) 221, 698
HincII GTYRAC 1 cut(s) 1166
HindII GTYRAC 1 cut(s) 1166
HindIII AAGCTT 1 cut(s) 1086
HinfI GANTC 9 cut(s) 53, 191, 205, 290, 457, 502, 658, 691, 712
HpaII CCGG 3 cut(s) 467, 1027, 1153
HphI GGTGA 4 cut(s) 172, 296, 1072, 1464
Hpy166II GTNNAC 5 cut(s) 163, 367, 647, 1108, 1166
Hpy188III TCNNGA 2 cut(s) 499, 1100
Hpy8I GTNNAC 5 cut(s) 163, 367, 647, 1108, 1166
HpyAV CCTTC 4 cut(s) 1137, 1185, 1356, 1365
HpyCH4III ACNGT 1 cut(s) 637
Hsp92II CATG 6 cut(s) 158, 173, 631, 934, 996, 1209
HspAI GCGC 2 cut(s) 221, 698
KroI GCCGGC 1 cut(s) 1152
KroNI GCCGGC 1 cut(s) 1154
Kzo9I GATC 8 cut(s) 70, 133, 151, 166, 1145, 1196, 1385, 1466
LguI GCTCTTC 2 cut(s) 249, 1101
LmnI GCTCC 2 cut(s) 1313, 1571
LweI GCATC 2 cut(s) 337, 1067
MaeI CTAG 1 cut(s) 1161
MaeIII GTNAC 1 cut(s) 1401
MalI GATC 8 cut(s) 72, 135, 153, 168, 1147, 1198, 1387, 1468
MboI GATC 8 cut(s) 70, 133, 151, 166, 1145, 1196, 1385, 1466
MhlI GDGCHC 2 cut(s) 525, 1424
MlsI TGGCCA 1 cut(s) 1140
MluCI AATT 3 cut(s) 197, 329, 901
MluNI TGGCCA 1 cut(s) 1140
MlyI GAGTC 2 cut(s) 62, 451
MmeI TCCRAC 1 cut(s) 938
Mox20I TGGCCA 1 cut(s) 1140
Mph1103I ATGCAT 1 cut(s) 629
MroNI GCCGGC 1 cut(s) 1152
MscI TGGCCA 1 cut(s) 1140
MseI TTAA 4 cut(s) 275, 597, 620, 1284
MslI CAYNNNNRTG 1 cut(s) 389
Msp20I TGGCCA 1 cut(s) 1140
MspA1I CMGCKG 1 cut(s) 1230
MspI CCGG 3 cut(s) 467, 1027, 1153
MspR9I CCNGG 3 cut(s) 467, 468, 1028
Mva1269I GAATGC 1 cut(s) 512
MvnI CGCG 1 cut(s) 1113
NaeI GCCGGC 1 cut(s) 1154
NciI CCSGG 3 cut(s) 467, 468, 1028
NcoI CCATGG 1 cut(s) 992
NdeII GATC 8 cut(s) 70, 133, 151, 166, 1145, 1196, 1385, 1466
NgoMIV GCCGGC 1 cut(s) 1152
NlaIII CATG 6 cut(s) 158, 173, 631, 934, 996, 1209
NlaIV GGNNCC 4 cut(s) 785, 936, 1309, 1545
NmuCI GTSAC 1 cut(s) 1401
NsiI ATGCAT 1 cut(s) 629
NspI RCATGY 1 cut(s) 631
PaeI GCATGC 1 cut(s) 631
PciSI GCTCTTC 2 cut(s) 249, 1101
PctI GAATGC 1 cut(s) 512
PdiI GCCGGC 1 cut(s) 1154
PfeI GAWTC 7 cut(s) 191, 205, 290, 502, 658, 691, 712
PleI GAGTC 2 cut(s) 61, 451
PpsI GAGTC 2 cut(s) 61, 451
PpuMI RGGWCCY 1 cut(s) 1544
Psp124BI GAGCTC 1 cut(s) 1424
Psp5II RGGWCCY 1 cut(s) 1544
PspFI CCCAGC 2 cut(s) 938, 1230
PspN4I GGNNCC 4 cut(s) 785, 936, 1309, 1545
PspPI GGNCC 4 cut(s) 861, 934, 1029, 1544
PspPPI RGGWCCY 1 cut(s) 1544
PstI CTGCAG 4 cut(s) 31, 400, 433, 1582
PvuII CAGCTG 1 cut(s) 1230
RsaI GTAC 2 cut(s) 648, 1258
RsaNI GTAC 2 cut(s) 647, 1257
RseI CAYNNNNRTG 1 cut(s) 389
SacI GAGCTC 1 cut(s) 1424
SalI GTCGAC 1 cut(s) 1164
SapI GCTCTTC 2 cut(s) 249, 1101
SaqAI TTAA 4 cut(s) 275, 597, 620, 1284
Sau3AI GATC 8 cut(s) 70, 133, 151, 166, 1145, 1196, 1385, 1466
Sau96I GGNCC 4 cut(s) 861, 934, 1029, 1544
ScaI AGTACT 1 cut(s) 1258
SchI GAGTC 2 cut(s) 62, 451
ScrFI CCNGG 3 cut(s) 467, 468, 1028
SduI GDGCHC 2 cut(s) 525, 1424
SfaNI GCATC 2 cut(s) 337, 1067
SfcI CTRYAG 5 cut(s) 27, 396, 429, 824, 1578
SinI GGWCC 2 cut(s) 934, 1544
SmaI CCCGGG 1 cut(s) 468
SmiMI CAYNNNNRTG 1 cut(s) 389
SphI GCATGC 1 cut(s) 631
Sse9I AATT 3 cut(s) 197, 329, 901
SsiI CCGC 4 cut(s) 405, 1073, 1111, 1236
SspMI CTAG 1 cut(s) 1161
SstI GAGCTC 1 cut(s) 1424
StyD4I CCNGG 3 cut(s) 465, 466, 1026
StyI CCWWGG 4 cut(s) 57, 864, 992, 1397
TaaI ACNGT 1 cut(s) 637
TaqI TCGA 3 cut(s) 327, 813, 1165
TasI AATT 3 cut(s) 197, 329, 901
TatI WGTACW 2 cut(s) 646, 1256
TauI GCSGC 1 cut(s) 407
TfiI GAWTC 7 cut(s) 191, 205, 290, 502, 658, 691, 712
Tru1I TTAA 4 cut(s) 275, 597, 620, 1284
Tru9I TTAA 4 cut(s) 275, 597, 620, 1284
TscAI CASTG 5 cut(s) 36, 454, 956, 1270, 1485
TseFI GTSAC 1 cut(s) 1401
Tsp45I GTSAC 1 cut(s) 1401
TspDTI ATGAA 4 cut(s) 168, 864, 919, 1191
TspMI CCCGGG 1 cut(s) 466
TspRI CASTG 5 cut(s) 36, 454, 956, 1270, 1485
VpaK11BI GGWCC 2 cut(s) 934, 1544
XagI CCTNNNNNAGG 1 cut(s) 1036
XapI RAATTY 2 cut(s) 197, 901
XceI RCATGY 1 cut(s) 631
XmaI CCCGGG 1 cut(s) 466
XmiI GTMKAC 1 cut(s) 1165
XspI CTAG 1 cut(s) 1161
ZrmI AGTACT 1 cut(s) 1258
Zsp2I ATGCAT 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.